© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04271 |
| Gene name | |
| Location | scaffold_04:2417456..2418078 |
| Strand | + |
| Gene length (bp) | 622 |
| Transcript length (bp) | 420 |
| Coding sequence length (bp) | 420 |
| Protein length (aa) | 140 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03311 | Cornichon | Cornichon protein | 7.3E-50 | 6 | 127 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 112 | 134 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 421.86 | 243.48 | 600.25 |
| Alive | In ants, during behavior modification | 396.75 | 220.39 | 573.11 |
| Dead | In ants, recently dead | 268.51 | 148.60 | 388.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.796208 | no |
| Alive | Dead | 0.014273 | yes |
| Dead | Fungus | 0.013747 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04271 MMSGEAWLYLLAVLINAVNLFLQVFFTIMYSDLECDYINPIELCNRLNAYVVPEAAVHAVLTFLFLVNGYWLALL LNVPLLLWNAKKIIDNTHLLDATEIFRKLNVHKKESFAKLAFHLVMFFFYLYSMIVALIRDESS* |
| Coding | >Ophcf2|04271 ATGATGTCGGGAGAGGCGTGGCTTTACCTTCTGGCCGTTTTAATCAACGCTGTGAATCTCTTTCTGCAGGTCTTT TTCACCATCATGTACAGCGACCTAGAATGCGACTACATCAATCCTATCGAACTTTGCAACCGGTTAAATGCTTAC GTCGTGCCCGAAGCAGCAGTACACGCTGTCCTAACATTCCTTTTCCTCGTAAATGGATACTGGCTGGCCCTCCTT TTGAATGTGCCTCTTCTTCTTTGGAACGCGAAAAAGATTATAGACAACACCCACTTGCTAGATGCCACCGAAATC TTTCGCAAGCTCAACGTACACAAAAAGGAATCTTTTGCCAAACTCGCTTTTCATTTAGTTATGTTCTTTTTCTAC TTATATAGCATGATTGTAGCACTTATTAGAGATGAGTCTTCTTAA |
| Transcript | >Ophcf2|04271 ATGATGTCGGGAGAGGCGTGGCTTTACCTTCTGGCCGTTTTAATCAACGCTGTGAATCTCTTTCTGCAGGTCTTT TTCACCATCATGTACAGCGACCTAGAATGCGACTACATCAATCCTATCGAACTTTGCAACCGGTTAAATGCTTAC GTCGTGCCCGAAGCAGCAGTACACGCTGTCCTAACATTCCTTTTCCTCGTAAATGGATACTGGCTGGCCCTCCTT TTGAATGTGCCTCTTCTTCTTTGGAACGCGAAAAAGATTATAGACAACACCCACTTGCTAGATGCCACCGAAATC TTTCGCAAGCTCAACGTACACAAAAAGGAATCTTTTGCCAAACTCGCTTTTCATTTAGTTATGTTCTTTTTCTAC TTATATAGCATGATTGTAGCACTTATTAGAGATGAGTCTTCTTAA |
| Gene | >Ophcf2|04271 ATGATGTCGGGAGAGGCGTGGCTTTACCTTCTGGCCGTTTTAATCAACGCTGTGAATCTCTTTCTGCAGGTCTTT TTCACCATCATGTACAGCGACCTAGAATGGTATGTCAAATCAGGTCTTCATTTCAAGTTCTCTCTTGTGTCCTCC GAGCTGCCATTTTTTGCAACGAAGACCATTCGATCCAGTCTAACGGCTAGTCACAGCGACTACATCAATCCTATC GAACTTTGCAACCGGTTAAATGCTTACGTCGTGCCCGAAGCAGCAGTACACGCTGTCCTAACATTCCTTTTCCTC GTAAATGGATACTGGCTGGCCCTCCTTTTGAATGTGCCTCTTCTTCTTTGGAACGCGAAAAAGTGAGAACATTGT CGACCCCTTCTGAAGCAATGTTGCTAATAAATGATAAGGATTATAGACAACACCCACTTGCTAGATGCCACCGAA ATCTTTCGCAAGCTCAACGTACACAAAAAGGTAACTGCTTCACCTATGCTGCATATGTCTCGCCTAGTAACAGTG ACAGGAATCTTTTGCCAAACTCGCTTTTCATTTAGTTATGTTCTTTTTCTACTTATATAGCATGATTGTAGCACT TATTAGAGATGAGTCTTCTTAA |