Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04258
Gene name
Location	scaffold_04:1792942..1795177
Strand	-
Gene length (bp)	2235
Transcript length (bp)	1002
Coding sequence length (bp)	1002
Protein length (aa)	334

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00153	Mito_carr	Mitochondrial carrier protein	6.6E-09	9	78
PF00153	Mito_carr	Mitochondrial carrier protein	7.1E-14	99	186
PF00153	Mito_carr	Mitochondrial carrier protein	1.6E-15	191	279

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 17	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	15	32	17
2	65	87	22
3	102	124	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	143.23	81.08	205.38
Alive	In ants, during behavior modification	180.65	100.84	260.46
Dead	In ants, recently dead	137.73	78.01	197.44

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.242769	no
Alive	Dead	0.101735	no
Dead	Fungus	0.872738	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04258 MSVQSKPEPSPWSRATAGAAGAVLANLLAYPLDIVKTRLQVQVGQGDANSVADNEVHYTSTWNAISRIVASTNFA YFYWYTVVRSLYLNSCPARRSSPPMSVELALGAVAGALAQLFTIPVAVVTTRQQTASRHERKSLLDTAHEVVEGP DGILGLWRGLKASLILVVNPAITYGAYERLRTVFFHGKPNLSPWEAFLLGAFSKAIATVVTQPLIVAKVSLQSKP PPARKGRPFRNFVEVLTFVAEREGLLALFKGIGPQIAKGLLVQGILMMTKERVEIYVLQLLSKFYATQKVCGRSL AVEGKNSRLPNLIILFADGAKLRQHRLVEVVEE*
Coding	>Ophcf2\|04258 ATGAGCGTACAGTCTAAGCCAGAGCCATCTCCTTGGAGTCGCGCTACTGCCGGCGCTGCCGGTGCTGTGTTAGCA AATCTGCTGGCGTATCCCCTGGACATTGTGAAAACGCGCCTTCAAGTCCAGGTTGGTCAAGGTGATGCCAACTCG GTCGCGGATAATGAGGTCCATTACACTTCAACTTGGAACGCCATCTCGCGCATAGTTGCGTCCACAAATTTCGCC TACTTTTACTGGTATACGGTGGTAAGGAGTCTGTACCTCAACTCATGCCCTGCGCGGCGTTCCTCGCCCCCAATG AGCGTGGAACTTGCGCTCGGCGCCGTCGCAGGCGCTTTAGCACAACTTTTTACCATACCGGTGGCTGTTGTCACG ACTCGGCAACAAACTGCAAGCCGACACGAGCGCAAAAGCCTCTTAGACACTGCTCATGAAGTAGTCGAGGGACCC GACGGTATCTTGGGCCTCTGGAGAGGTCTCAAAGCAAGTCTCATTCTGGTTGTGAATCCTGCCATTACCTATGGC GCATACGAGCGTCTGCGGACTGTCTTCTTCCATGGCAAACCTAATCTAAGTCCATGGGAAGCGTTCTTGCTTGGC GCCTTTTCAAAGGCTATTGCTACGGTGGTCACACAGCCACTCATTGTAGCTAAAGTCTCGTTACAATCTAAGCCA CCACCAGCCAGGAAAGGGAGGCCATTCCGAAATTTCGTCGAAGTATTGACCTTCGTTGCCGAGCGCGAAGGCCTT TTGGCCCTATTCAAGGGGATCGGTCCCCAAATCGCTAAGGGCTTGTTGGTTCAGGGCATCCTTATGATGACGAAA GAAAGAGTCGAAATTTATGTCCTGCAACTTTTGAGCAAGTTCTACGCAACTCAAAAAGTATGCGGTCGAAGCTTG GCTGTCGAGGGCAAGAACAGTCGACTGCCAAATCTGATCATACTGTTCGCGGATGGTGCGAAGCTCAGACAGCAC CGTCTGGTTGAGGTCGTCGAGGAATGA
Transcript	>Ophcf2\|04258 ATGAGCGTACAGTCTAAGCCAGAGCCATCTCCTTGGAGTCGCGCTACTGCCGGCGCTGCCGGTGCTGTGTTAGCA AATCTGCTGGCGTATCCCCTGGACATTGTGAAAACGCGCCTTCAAGTCCAGGTTGGTCAAGGTGATGCCAACTCG GTCGCGGATAATGAGGTCCATTACACTTCAACTTGGAACGCCATCTCGCGCATAGTTGCGTCCACAAATTTCGCC TACTTTTACTGGTATACGGTGGTAAGGAGTCTGTACCTCAACTCATGCCCTGCGCGGCGTTCCTCGCCCCCAATG AGCGTGGAACTTGCGCTCGGCGCCGTCGCAGGCGCTTTAGCACAACTTTTTACCATACCGGTGGCTGTTGTCACG ACTCGGCAACAAACTGCAAGCCGACACGAGCGCAAAAGCCTCTTAGACACTGCTCATGAAGTAGTCGAGGGACCC GACGGTATCTTGGGCCTCTGGAGAGGTCTCAAAGCAAGTCTCATTCTGGTTGTGAATCCTGCCATTACCTATGGC GCATACGAGCGTCTGCGGACTGTCTTCTTCCATGGCAAACCTAATCTAAGTCCATGGGAAGCGTTCTTGCTTGGC GCCTTTTCAAAGGCTATTGCTACGGTGGTCACACAGCCACTCATTGTAGCTAAAGTCTCGTTACAATCTAAGCCA CCACCAGCCAGGAAAGGGAGGCCATTCCGAAATTTCGTCGAAGTATTGACCTTCGTTGCCGAGCGCGAAGGCCTT TTGGCCCTATTCAAGGGGATCGGTCCCCAAATCGCTAAGGGCTTGTTGGTTCAGGGCATCCTTATGATGACGAAA GAAAGAGTCGAAATTTATGTCCTGCAACTTTTGAGCAAGTTCTACGCAACTCAAAAAGTATGCGGTCGAAGCTTG GCTGTCGAGGGCAAGAACAGTCGACTGCCAAATCTGATCATACTGTTCGCGGATGGTGCGAAGCTCAGACAGCAC CGTCTGGTTGAGGTCGTCGAGGAATGA
Gene	>Ophcf2\|04258 ATGAGCGTACAGTCTAAGCCAGAGCCATCTCCTTGGAGTCGCGCTACTGCCGGCGCTGCCGGTGCTGTGTTAGCA AATCTGCTGGCGTATCCCCTGGACATGTGTGTAAGGCCTCGTCCTCCGATTTTCCCCTCTTACTGCTAAATCAGA TCACGACCTGTAAGTGTGAAAACGCGCCTTCAAGTCCAGGTTGGTCAAGGTGATGCCAACTCGGTCGCGGATAAT GAGGTCCATTACACTTCAACTTGGAACGCCATCTCGCGCATAGTTGGTGAGGACGGCATTAGGGGCTTATATGCC GGTATGAATGGGTCTCTGGTTGGGGTAGCGTCCACAAATTTCGCCTACTTTTACTGGTATACGGTGGTAAGGAGT CTGTACCTCAACTCATGCCCTGCGCGGCGTTCCTCGCCCCCAATGAGCGTGGAACTTGCGCTCGGCGCCGTCGCA GGCGCTTTAGCACAACTTTTTACCATACCGGTGGCTGTTGTCACGACTCGGCAACAAACTGCAAGCCGACACGAG CGCAAAAGCCTCTTAGACACTGCTCATGAAGTAGTCGAGGGACCCGACGGTATCTTGGGCCTCTGGAGAGGTCTC AAAGCAAGTCTCATTCTGGTTGTGAATCCTGCCATTACCTATGGCGCATACGAGCGTCTGCGGACTGTCTTCTTC CATGGCAAACCTAATCTAAGTCCATGGGAAGCGTTCTGTAAGTCGACCCTTGCACCATCACAGACATATGTCTTT TAGCTGTCCATGCGCCAAGCTGTGTCTGATGATGAGCTCCAGTGCTTGGCGCCTTTTCAAAGGCTATTGCTACGG TGGTCACACAGCCACTCATTGTAGCTAAAGTCTCGTTACAATCTAAGCCACCACCAGCCAGGAAAGGGAGGCCAT TCCGAAATTTCGTCGAAGTATTGACCTTCGTTGCCGAGCGCGAAGGCCTTTTGGCCCTATTCAAGGGGATCGGTC CCCAAATCGCTAAGGGCTTGTTGGTTCAGGGCATCCTTATGATGACGAAAGAAAGGTTAGTGCAGCACGGTTTTT TGTGACTCTGATCTACCTGCGATTTTAACGCAGCGCTTGTTGACAAACGACAGAGTCGAAATTTATGTCCTGCAA CTTTTGAGCAAGTTCTACGCAACTCAAAAAGTATGCGGTCGAAGGTTGAGCAATATTGCCTCGTTGGTAATTATA TATTGTCGTCTTTACTTCCGCGATCGTAAGACTTATTCTCTCTGACGCCACCGATATACTGCACACATTTATGTT TCATGGAGCTCATATTAGAGATACTCTATTGATATGGACTACTTCTCAACCGTCTGGGATTTCGGTGAACAGAAA ATGTTTCTTCATTGCAGCATCAACATTGCCTGCCAACAGGCTGCAGCGAGAATTATTCAGGGAGAGTTTCCTGCT CCTCCAGCCGCTCTGGCCTGCCGAGAACCCGCCAGGAGTTTGCCACCTAGGTTAAATTTGACTAAGTCAGTATAA TCTGTCTGGGTTAGGAAAACTCGGCCTAGTAGCGGCTCATGGAGGAAGGGCACGATGAAGCCGGTCTGGTTCGTA CTATTGAGACAAGGCAGGGTGTTCCGGTAGAGAAGGAAGTGGCTTGCGAGAATTTGTAGCCTGTGACAAGCACAG CGAGGAATGCAGAAGCCTCTTATCATCCTCGTGCTGCGGGTCGTAACTGTGATTGCACTCAGTAGTGGTTCCGGA TGCAACTGGTAACCCCTCTTTGAACGGTAGAGACAGATGACGATAGTCGGAGTTGAGAGGATCATTGGACATAGA GCCACTCGGAATCAGGCCGGTGATATTCTCCGGGGGTTGCATAGGAGTATGCCGGAGTGTAGGACGGTTTGGATG TCGGTTGCGCGGGGGCCCATCATGACACTGCTGCTCAGAGTTGCCAAATCTGTCATTCAGGGCACTCGAGGTGCT CTGACCCGAGAGTGATATGAGCGGCGATATAGACACCCCTCTGGAGAAGATGACGAGAAAAAGGCATGAGAGCAG GATGACAGCTTGAAGAATGGCCATTCTCTTCTGGAAGACAACTTCTTCGGCCAATAAGTTGAGTCTGGTGCTAAG GGCCATGATGTCCCGCTCTGAACGATCAGCTTGGCTGTCGAGGGCAAGAACAGTCGACTGCCAAATCTGATCATA CTGTTCGCGGATGGTGCGAAGCTCAGACAGCACCGTCTGGTTGAGGTCGTCGAGGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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