Protein ID | Ophcf2|04245 |
Gene name | |
Location | scaffold_04:1494059..1495082 |
Strand | + |
Gene length (bp) | 1023 |
Transcript length (bp) | 879 |
Coding sequence length (bp) | 879 |
Protein length (aa) | 293 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04893 | Yip1 | Yip1 domain | 9.5E-14 | 94 | 250 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016020 | membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole|Golgi apparatus | Signal peptide|Transmembrane domain | 0.082 | 0.1062 | 0.035 | 0.1171 | 0.0912 | 0.0376 | 0.6198 | 0.7292 | 0.9068 | 0.0202 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 111 | 133 | 22 |
2 | 148 | 170 | 22 |
3 | 183 | 202 | 19 |
4 | 207 | 229 | 22 |
5 | 242 | 264 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 5022 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|04245 MSGSGYDAVVDVDDEGDLGHTDLQEDLEFHTSNFNESTSGGSRKSRPTTSLPPPVTASTSSPSSKRFLWTLSFYA QFFDVDTSAVLSRCWAALFPRANFLDVLEGNPDLYGPFWIATTVVLILFLGGTISQYLSTTKNTPFAYDFRLLSG AAGLVYGYTLFLPVLLFLALRYFGSESANLLECWALYGYSNLIWIPVAIISWSPISILNWVFVAVGFSMSVAFLV RNLYPVLSATDKQISKVLLVLVVMLHAGLSLTIKILFFAHGSPVARSPGQGGPGKSGGDGKTPAGRF* |
Coding | >Ophcf2|04245 ATGTCCGGTTCCGGATACGACGCAGTGGTGGACGTGGACGACGAGGGCGACCTCGGACACACGGACCTTCAGGAG GATCTCGAGTTTCATACGTCCAACTTCAACGAGTCGACATCCGGCGGCAGCCGCAAGAGTCGACCGACGACAAGC CTGCCCCCGCCAGTCACGGCGTCGACGTCATCCCCGTCGTCGAAGCGCTTCTTGTGGACCCTGTCCTTCTATGCG CAATTCTTTGATGTCGACACGTCGGCGGTGTTGTCCCGGTGCTGGGCCGCGCTGTTCCCGCGGGCCAACTTTCTT GACGTGCTCGAGGGCAATCCCGACTTGTACGGGCCGTTTTGGATCGCCACGACGGTTGTTCTCATCTTATTCTTG GGCGGTACCATAAGCCAGTACCTCTCGACCACGAAGAATACGCCGTTTGCATACGATTTCAGGCTTTTGAGCGGC GCTGCTGGACTCGTGTATGGATATACGCTTTTCCTTCCCGTCCTTCTGTTCCTCGCACTCCGATACTTTGGCAGC GAGTCAGCGAATCTTCTCGAATGCTGGGCGCTATACGGCTATTCCAACCTCATCTGGATCCCGGTAGCCATCATC AGCTGGTCGCCGATATCGATTCTCAATTGGGTCTTCGTTGCCGTCGGCTTCAGTATGTCTGTCGCTTTCCTCGTC CGCAACCTGTACCCTGTCTTGAGCGCGACCGATAAGCAGATCAGCAAGGTGCTGCTAGTACTCGTCGTAATGCTT CACGCCGGCCTGTCGCTTACCATCAAGATCCTATTTTTCGCTCACGGAAGCCCAGTAGCGAGGTCTCCGGGCCAG GGTGGTCCGGGGAAATCAGGAGGGGATGGTAAGACACCTGCTGGCAGGTTTTAG |
Transcript | >Ophcf2|04245 ATGTCCGGTTCCGGATACGACGCAGTGGTGGACGTGGACGACGAGGGCGACCTCGGACACACGGACCTTCAGGAG GATCTCGAGTTTCATACGTCCAACTTCAACGAGTCGACATCCGGCGGCAGCCGCAAGAGTCGACCGACGACAAGC CTGCCCCCGCCAGTCACGGCGTCGACGTCATCCCCGTCGTCGAAGCGCTTCTTGTGGACCCTGTCCTTCTATGCG CAATTCTTTGATGTCGACACGTCGGCGGTGTTGTCCCGGTGCTGGGCCGCGCTGTTCCCGCGGGCCAACTTTCTT GACGTGCTCGAGGGCAATCCCGACTTGTACGGGCCGTTTTGGATCGCCACGACGGTTGTTCTCATCTTATTCTTG GGCGGTACCATAAGCCAGTACCTCTCGACCACGAAGAATACGCCGTTTGCATACGATTTCAGGCTTTTGAGCGGC GCTGCTGGACTCGTGTATGGATATACGCTTTTCCTTCCCGTCCTTCTGTTCCTCGCACTCCGATACTTTGGCAGC GAGTCAGCGAATCTTCTCGAATGCTGGGCGCTATACGGCTATTCCAACCTCATCTGGATCCCGGTAGCCATCATC AGCTGGTCGCCGATATCGATTCTCAATTGGGTCTTCGTTGCCGTCGGCTTCAGTATGTCTGTCGCTTTCCTCGTC CGCAACCTGTACCCTGTCTTGAGCGCGACCGATAAGCAGATCAGCAAGGTGCTGCTAGTACTCGTCGTAATGCTT CACGCCGGCCTGTCGCTTACCATCAAGATCCTATTTTTCGCTCACGGAAGCCCAGTAGCGAGGTCTCCGGGCCAG GGTGGTCCGGGGAAATCAGGAGGGGATGGTAAGACACCTGCTGGCAGGTTTTAG |
Gene | >Ophcf2|04245 ATGTCCGGTTCCGGATACGACGCAGTGGTGGACGTGGACGACGAGGTAGTTGAAGAAGGCCTTTTCTTGTGCGGC GAGGAAACCACCTTGTTGACCATATTTATGCCCCTTCCCACACGCGCAGGGCGACCTCGGACACACGGACCTTCA GGAGGATCTCGAGTTTCATACGTCCAACTTCAACGAGTCGACATCCGGCGGCAGCCGCAAGAGTCGACCGACGAC AAGCCTGCCCCCGCCAGTCACGGCGTCGACGTCATCCCCGTCGTCGAAGCGCTTCTTGTGGACCCTGTCCTTCTA TGCGCAATTCTTTGATGTCGACACGTCGGCGGTGTTGTCCCGGTGCTGGGCCGCGCTGTTCCCGCGGGCCAACTT TCTTGACGTGCTCGAGGGCAATCCCGACTTGTACGGGCCGTTTTGGATCGCCACGACGGTTGTTCTCATCTTATT CTTGGGCGGTACCATAAGCCAGTACCTCTCGACCACGAAGAATACGCCGTTTGCATACGATTTCAGGCTTTTGAG CGGTAAAACGCCCCTTTTGCAGTGCTTTCTACCGGCCGAGCTGACGCCCTGGTTTCCATTCTGCCAGGCGCTGCT GGACTCGTGTATGGATATACGCTTTTCCTTCCCGTCCTTCTGTTCCTCGCACTCCGATACTTTGGCAGCGAGTCA GCGAATCTTCTCGAATGCTGGGCGCTATACGGCTATTCCAACCTCATCTGGATCCCGGTAGCCATCATCAGCTGG TCGCCGATATCGATTCTCAATTGGGTCTTCGTTGCCGTCGGCTTCAGTATGTCTGTCGCTTTCCTCGTCCGCAAC CTGTACCCTGTCTTGAGCGCGACCGATAAGCAGATCAGCAAGGTGCTGCTAGTACTCGTCGTAATGCTTCACGCC GGCCTGTCGCTTACCATCAAGATCCTATTTTTCGCTCACGGAAGCCCAGTAGCGAGGTCTCCGGGCCAGGGTGGT CCGGGGAAATCAGGAGGGGATGGTAAGACACCTGCTGGCAGGTTTTAG |