Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04245
Gene name
Locationscaffold_04:1494059..1495082
Strand+
Gene length (bp)1023
Transcript length (bp)879
Coding sequence length (bp)879
Protein length (aa) 293

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04893 Yip1 Yip1 domain 9.5E-14 94 250

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 56 0.45

Transmembrane Domains

Domain # Start End Length
1 111 133 22
2 148 170 22
3 183 202 19
4 207 229 22
5 242 264 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04245
MSGSGYDAVVDVDDEGDLGHTDLQEDLEFHTSNFNESTSGGSRKSRPTTSLPPPVTASTSSPSSKRFLWTLSFYA
QFFDVDTSAVLSRCWAALFPRANFLDVLEGNPDLYGPFWIATTVVLILFLGGTISQYLSTTKNTPFAYDFRLLSG
AAGLVYGYTLFLPVLLFLALRYFGSESANLLECWALYGYSNLIWIPVAIISWSPISILNWVFVAVGFSMSVAFLV
RNLYPVLSATDKQISKVLLVLVVMLHAGLSLTIKILFFAHGSPVARSPGQGGPGKSGGDGKTPAGRF*
Coding >Ophcf2|04245
ATGTCCGGTTCCGGATACGACGCAGTGGTGGACGTGGACGACGAGGGCGACCTCGGACACACGGACCTTCAGGAG
GATCTCGAGTTTCATACGTCCAACTTCAACGAGTCGACATCCGGCGGCAGCCGCAAGAGTCGACCGACGACAAGC
CTGCCCCCGCCAGTCACGGCGTCGACGTCATCCCCGTCGTCGAAGCGCTTCTTGTGGACCCTGTCCTTCTATGCG
CAATTCTTTGATGTCGACACGTCGGCGGTGTTGTCCCGGTGCTGGGCCGCGCTGTTCCCGCGGGCCAACTTTCTT
GACGTGCTCGAGGGCAATCCCGACTTGTACGGGCCGTTTTGGATCGCCACGACGGTTGTTCTCATCTTATTCTTG
GGCGGTACCATAAGCCAGTACCTCTCGACCACGAAGAATACGCCGTTTGCATACGATTTCAGGCTTTTGAGCGGC
GCTGCTGGACTCGTGTATGGATATACGCTTTTCCTTCCCGTCCTTCTGTTCCTCGCACTCCGATACTTTGGCAGC
GAGTCAGCGAATCTTCTCGAATGCTGGGCGCTATACGGCTATTCCAACCTCATCTGGATCCCGGTAGCCATCATC
AGCTGGTCGCCGATATCGATTCTCAATTGGGTCTTCGTTGCCGTCGGCTTCAGTATGTCTGTCGCTTTCCTCGTC
CGCAACCTGTACCCTGTCTTGAGCGCGACCGATAAGCAGATCAGCAAGGTGCTGCTAGTACTCGTCGTAATGCTT
CACGCCGGCCTGTCGCTTACCATCAAGATCCTATTTTTCGCTCACGGAAGCCCAGTAGCGAGGTCTCCGGGCCAG
GGTGGTCCGGGGAAATCAGGAGGGGATGGTAAGACACCTGCTGGCAGGTTTTAG
Transcript >Ophcf2|04245
ATGTCCGGTTCCGGATACGACGCAGTGGTGGACGTGGACGACGAGGGCGACCTCGGACACACGGACCTTCAGGAG
GATCTCGAGTTTCATACGTCCAACTTCAACGAGTCGACATCCGGCGGCAGCCGCAAGAGTCGACCGACGACAAGC
CTGCCCCCGCCAGTCACGGCGTCGACGTCATCCCCGTCGTCGAAGCGCTTCTTGTGGACCCTGTCCTTCTATGCG
CAATTCTTTGATGTCGACACGTCGGCGGTGTTGTCCCGGTGCTGGGCCGCGCTGTTCCCGCGGGCCAACTTTCTT
GACGTGCTCGAGGGCAATCCCGACTTGTACGGGCCGTTTTGGATCGCCACGACGGTTGTTCTCATCTTATTCTTG
GGCGGTACCATAAGCCAGTACCTCTCGACCACGAAGAATACGCCGTTTGCATACGATTTCAGGCTTTTGAGCGGC
GCTGCTGGACTCGTGTATGGATATACGCTTTTCCTTCCCGTCCTTCTGTTCCTCGCACTCCGATACTTTGGCAGC
GAGTCAGCGAATCTTCTCGAATGCTGGGCGCTATACGGCTATTCCAACCTCATCTGGATCCCGGTAGCCATCATC
AGCTGGTCGCCGATATCGATTCTCAATTGGGTCTTCGTTGCCGTCGGCTTCAGTATGTCTGTCGCTTTCCTCGTC
CGCAACCTGTACCCTGTCTTGAGCGCGACCGATAAGCAGATCAGCAAGGTGCTGCTAGTACTCGTCGTAATGCTT
CACGCCGGCCTGTCGCTTACCATCAAGATCCTATTTTTCGCTCACGGAAGCCCAGTAGCGAGGTCTCCGGGCCAG
GGTGGTCCGGGGAAATCAGGAGGGGATGGTAAGACACCTGCTGGCAGGTTTTAG
Gene >Ophcf2|04245
ATGTCCGGTTCCGGATACGACGCAGTGGTGGACGTGGACGACGAGGTAGTTGAAGAAGGCCTTTTCTTGTGCGGC
GAGGAAACCACCTTGTTGACCATATTTATGCCCCTTCCCACACGCGCAGGGCGACCTCGGACACACGGACCTTCA
GGAGGATCTCGAGTTTCATACGTCCAACTTCAACGAGTCGACATCCGGCGGCAGCCGCAAGAGTCGACCGACGAC
AAGCCTGCCCCCGCCAGTCACGGCGTCGACGTCATCCCCGTCGTCGAAGCGCTTCTTGTGGACCCTGTCCTTCTA
TGCGCAATTCTTTGATGTCGACACGTCGGCGGTGTTGTCCCGGTGCTGGGCCGCGCTGTTCCCGCGGGCCAACTT
TCTTGACGTGCTCGAGGGCAATCCCGACTTGTACGGGCCGTTTTGGATCGCCACGACGGTTGTTCTCATCTTATT
CTTGGGCGGTACCATAAGCCAGTACCTCTCGACCACGAAGAATACGCCGTTTGCATACGATTTCAGGCTTTTGAG
CGGTAAAACGCCCCTTTTGCAGTGCTTTCTACCGGCCGAGCTGACGCCCTGGTTTCCATTCTGCCAGGCGCTGCT
GGACTCGTGTATGGATATACGCTTTTCCTTCCCGTCCTTCTGTTCCTCGCACTCCGATACTTTGGCAGCGAGTCA
GCGAATCTTCTCGAATGCTGGGCGCTATACGGCTATTCCAACCTCATCTGGATCCCGGTAGCCATCATCAGCTGG
TCGCCGATATCGATTCTCAATTGGGTCTTCGTTGCCGTCGGCTTCAGTATGTCTGTCGCTTTCCTCGTCCGCAAC
CTGTACCCTGTCTTGAGCGCGACCGATAAGCAGATCAGCAAGGTGCTGCTAGTACTCGTCGTAATGCTTCACGCC
GGCCTGTCGCTTACCATCAAGATCCTATTTTTCGCTCACGGAAGCCCAGTAGCGAGGTCTCCGGGCCAGGGTGGT
CCGGGGAAATCAGGAGGGGATGGTAAGACACCTGCTGGCAGGTTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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