© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04209 |
| Gene name | |
| Location | scaffold_04:1153153..1153705 |
| Strand | + |
| Gene length (bp) | 552 |
| Transcript length (bp) | 375 |
| Coding sequence length (bp) | 375 |
| Protein length (aa) | 125 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01423 | LSM | LSM domain | 1.9E-14 | 6 | 69 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 341.15 | 189.00 | 493.29 |
| Alive | In ants, during behavior modification | 383.12 | 216.53 | 549.71 |
| Dead | In ants, recently dead | 308.28 | 171.04 | 445.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.602606 | no |
| Alive | Dead | 0.212269 | no |
| Dead | Fungus | 0.657657 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04209 MLPLGFLNAAQGQPILIELKNGDTLTGHLVACDTWMNLTLKDAVLGNFESDKYLKLKESYVKGNNIKFLRVPDEI MEQVSESQKNHQSGFRGGRGGQSRGEHSGRGGDRSRGRGGGRGRSRGRG* |
| Coding | >Ophcf2|04209 ATGCTTCCTCTCGGCTTCCTCAACGCGGCTCAAGGCCAACCAATACTGATTGAGCTGAAGAACGGAGACACGCTC ACCGGCCACCTCGTCGCCTGCGATACCTGGATGAACTTGACGCTCAAAGATGCGGTGCTGGGCAATTTCGAGAGC GACAAATACCTCAAGTTGAAGGAATCCTACGTGAAGGGAAACAACATAAAATTCTTACGGGTCCCAGACGAGATC ATGGAGCAAGTCAGCGAATCGCAGAAGAACCACCAGTCGGGCTTCCGAGGCGGCAGGGGAGGCCAGTCTAGAGGT GAACACAGCGGTCGTGGTGGCGATAGGTCAAGAGGCCGCGGCGGGGGTCGGGGCCGAAGTCGTGGAAGGGGATAA |
| Transcript | >Ophcf2|04209 ATGCTTCCTCTCGGCTTCCTCAACGCGGCTCAAGGCCAACCAATACTGATTGAGCTGAAGAACGGAGACACGCTC ACCGGCCACCTCGTCGCCTGCGATACCTGGATGAACTTGACGCTCAAAGATGCGGTGCTGGGCAATTTCGAGAGC GACAAATACCTCAAGTTGAAGGAATCCTACGTGAAGGGAAACAACATAAAATTCTTACGGGTCCCAGACGAGATC ATGGAGCAAGTCAGCGAATCGCAGAAGAACCACCAGTCGGGCTTCCGAGGCGGCAGGGGAGGCCAGTCTAGAGGT GAACACAGCGGTCGTGGTGGCGATAGGTCAAGAGGCCGCGGCGGGGGTCGGGGCCGAAGTCGTGGAAGGGGATAA |
| Gene | >Ophcf2|04209 ATGGTAAAGTCAACCTCGTTTACATCCCCGACGACTTGTCTCGCACGCTGACAGTGCTTTCACCCCGCAGCTTCC TCTCGGCTTCCTCAACGCGGCTCAAGGCCAACCAATACTGATTGAGCTGAAGAACGGAGACACGCTCACCGGCCA CCTCGTCGCCTGCGATACCTGGATGAACTTGACGCTCAAAGATGCGGTGCTGGGCAATTTCGTACGTTGCACCGC CGCCCCCTTCATACAGTCGTTGAAACTCTTTCCTCAGGAGAGCGACAAATACCTCAAGTTGAAGGAATCCTACGT GAAGGGAAACAACGTATGTGCTGCCTCACCTCTATCCCATCATGCGTCCCCTATAATGTTGACTCGCCACAGATA AAATTCTTACGGGTCCCAGACGAGATCATGGAGCAAGTCAGCGAATCGCAGAAGAACCACCAGTCGGGCTTCCGA GGCGGCAGGGGAGGCCAGTCTAGAGGTGAACACAGCGGTCGTGGTGGCGATAGGTCAAGAGGCCGCGGCGGGGGT CGGGGCCGAAGTCGTGGAAGGGGATAA |