Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04209
Gene name
Locationscaffold_04:1153153..1153705
Strand+
Gene length (bp)552
Transcript length (bp)375
Coding sequence length (bp)375
Protein length (aa) 125

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 1.9E-14 6 69

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04209
MLPLGFLNAAQGQPILIELKNGDTLTGHLVACDTWMNLTLKDAVLGNFESDKYLKLKESYVKGNNIKFLRVPDEI
MEQVSESQKNHQSGFRGGRGGQSRGEHSGRGGDRSRGRGGGRGRSRGRG*
Coding >Ophcf2|04209
ATGCTTCCTCTCGGCTTCCTCAACGCGGCTCAAGGCCAACCAATACTGATTGAGCTGAAGAACGGAGACACGCTC
ACCGGCCACCTCGTCGCCTGCGATACCTGGATGAACTTGACGCTCAAAGATGCGGTGCTGGGCAATTTCGAGAGC
GACAAATACCTCAAGTTGAAGGAATCCTACGTGAAGGGAAACAACATAAAATTCTTACGGGTCCCAGACGAGATC
ATGGAGCAAGTCAGCGAATCGCAGAAGAACCACCAGTCGGGCTTCCGAGGCGGCAGGGGAGGCCAGTCTAGAGGT
GAACACAGCGGTCGTGGTGGCGATAGGTCAAGAGGCCGCGGCGGGGGTCGGGGCCGAAGTCGTGGAAGGGGATAA
Transcript >Ophcf2|04209
ATGCTTCCTCTCGGCTTCCTCAACGCGGCTCAAGGCCAACCAATACTGATTGAGCTGAAGAACGGAGACACGCTC
ACCGGCCACCTCGTCGCCTGCGATACCTGGATGAACTTGACGCTCAAAGATGCGGTGCTGGGCAATTTCGAGAGC
GACAAATACCTCAAGTTGAAGGAATCCTACGTGAAGGGAAACAACATAAAATTCTTACGGGTCCCAGACGAGATC
ATGGAGCAAGTCAGCGAATCGCAGAAGAACCACCAGTCGGGCTTCCGAGGCGGCAGGGGAGGCCAGTCTAGAGGT
GAACACAGCGGTCGTGGTGGCGATAGGTCAAGAGGCCGCGGCGGGGGTCGGGGCCGAAGTCGTGGAAGGGGATAA
Gene >Ophcf2|04209
ATGGTAAAGTCAACCTCGTTTACATCCCCGACGACTTGTCTCGCACGCTGACAGTGCTTTCACCCCGCAGCTTCC
TCTCGGCTTCCTCAACGCGGCTCAAGGCCAACCAATACTGATTGAGCTGAAGAACGGAGACACGCTCACCGGCCA
CCTCGTCGCCTGCGATACCTGGATGAACTTGACGCTCAAAGATGCGGTGCTGGGCAATTTCGTACGTTGCACCGC
CGCCCCCTTCATACAGTCGTTGAAACTCTTTCCTCAGGAGAGCGACAAATACCTCAAGTTGAAGGAATCCTACGT
GAAGGGAAACAACGTATGTGCTGCCTCACCTCTATCCCATCATGCGTCCCCTATAATGTTGACTCGCCACAGATA
AAATTCTTACGGGTCCCAGACGAGATCATGGAGCAAGTCAGCGAATCGCAGAAGAACCACCAGTCGGGCTTCCGA
GGCGGCAGGGGAGGCCAGTCTAGAGGTGAACACAGCGGTCGTGGTGGCGATAGGTCAAGAGGCCGCGGCGGGGGT
CGGGGCCGAAGTCGTGGAAGGGGATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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