Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04208
Gene name
Locationscaffold_04:1151132..1152869
Strand-
Gene length (bp)1737
Transcript length (bp)1737
Coding sequence length (bp)1737
Protein length (aa) 579

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 93.08 52.38 133.78
Alive In ants, during behavior modification 70.69 40.04 101.34
Dead In ants, recently dead 64.61 37.09 92.14

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.155674 no
Alive Dead 0.635985 no
Dead Fungus 0.046934 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04208
MRSGRIWHRCLLQASRCPSWQLPVRISNAASCRSRRQTRLYSAVSSDSLAEEPIERIISWEERLFGPTPPTETAL
KQSSIEELSTALMAMRPPQEWKPAFGQNFDRHSRIIQIVRHMVGVRNQAPNLFIYECMMDAMADPLGSADGVQKL
LEDMQSQGIKPSLAICYSALAALAVHPDYKLRQDVLTLMRDLWFPVDTAAQQNVVVGLLRDEQYELAYARLMRMI
EQDARIEAWVLDLFIMVFGKLGYLDEMLVLMHHRRTIEGASEEVMTTLFYYLLDVCSEAFHLDGTVFAWEATVKN
SKVQPPDGIVENVLATAARHGKPQLATEALDMLSKRAWNLLPHHYEAVVEAFAASGDMAGALRILCIMRRKRDIL
IKRDHTRSLKQAMEQSPTLVARAEAAARALAAEQKLPTALVGAIVEARAEISDSEAAMPLYNDMSSLCDTAADPL
TMQTLMEHTTSNDTLRTIACQYAASVPPGSDPRRHPRDYIKLIPACAAAGEMDLAFRFAIHAVGSGRSREPLTWF
KPLMDYAAAREDSRIWLIVEELRKRSDGEALVTVRLAMEQMKMAKKVSDRRRD*
Coding >Ophcf2|04208
ATGCGCAGCGGAAGAATCTGGCATCGCTGTCTCTTACAGGCTTCGAGATGTCCATCGTGGCAGCTCCCCGTTCGA
ATAAGCAACGCAGCCTCTTGTCGGAGTCGTCGCCAGACTCGCCTTTACAGCGCTGTCTCCTCCGATTCTCTCGCT
GAAGAGCCGATCGAGAGAATCATCAGCTGGGAGGAGCGCCTTTTTGGGCCGACGCCCCCTACTGAGACGGCGCTG
AAGCAGTCCAGCATTGAAGAGCTTTCGACGGCGCTGATGGCCATGAGGCCTCCGCAAGAATGGAAGCCTGCTTTC
GGGCAGAATTTCGATCGTCACAGCCGAATTATTCAGATTGTGCGGCACATGGTCGGCGTACGGAACCAGGCGCCG
AATCTATTCATCTACGAATGCATGATGGACGCCATGGCTGACCCCCTGGGATCGGCCGACGGCGTTCAGAAGCTG
CTCGAAGACATGCAGTCTCAGGGCATCAAGCCATCCCTGGCTATATGCTACAGCGCGCTGGCCGCGCTGGCCGTC
CATCCCGACTACAAGCTACGACAGGACGTGCTGACCCTCATGCGCGATCTGTGGTTCCCCGTCGACACGGCGGCA
CAGCAGAACGTAGTCGTCGGCCTGCTTCGCGACGAGCAATACGAGCTGGCGTATGCGAGACTGATGCGCATGATA
GAGCAGGATGCCCGGATCGAAGCATGGGTTCTCGATCTCTTCATCATGGTGTTTGGAAAGCTCGGCTACCTGGAC
GAGATGCTGGTGCTGATGCATCATCGGAGGACCATCGAAGGGGCATCGGAAGAGGTCATGACGACCTTGTTCTAC
TATCTCCTAGACGTCTGTAGCGAGGCTTTTCACCTTGACGGCACCGTCTTCGCCTGGGAGGCGACGGTCAAGAAC
TCCAAGGTGCAGCCGCCGGATGGCATCGTGGAGAATGTGCTGGCAACGGCGGCTCGACACGGCAAGCCGCAGCTG
GCGACGGAAGCACTAGATATGCTCTCGAAACGGGCATGGAACCTGCTACCTCACCACTATGAGGCCGTCGTCGAG
GCCTTTGCGGCCAGCGGCGACATGGCGGGCGCGCTGCGAATCCTCTGCATCATGCGCCGCAAGCGAGACATCCTC
ATCAAGCGCGATCACACGCGCTCCCTCAAGCAGGCCATGGAGCAAAGCCCTACACTCGTGGCCCGAGCCGAAGCA
GCAGCCCGCGCCCTCGCAGCAGAGCAGAAGCTTCCAACCGCCCTAGTAGGTGCCATCGTCGAGGCGCGCGCCGAA
ATATCCGATAGCGAGGCAGCCATGCCCCTATACAACGACATGTCCAGCCTCTGCGACACAGCCGCCGACCCGCTA
ACGATGCAGACGCTCATGGAGCACACAACCAGCAACGACACGCTCCGGACCATAGCCTGCCAATACGCCGCTTCC
GTTCCTCCCGGCTCCGATCCGCGCCGCCACCCTCGCGACTACATCAAGCTGATACCCGCCTGCGCGGCCGCCGGT
GAGATGGACTTGGCCTTTCGCTTCGCCATCCATGCTGTCGGCTCGGGCCGATCCAGAGAGCCGCTGACTTGGTTC
AAGCCATTGATGGACTACGCTGCTGCGCGCGAGGACAGTCGTATTTGGCTTATTGTTGAGGAGTTGAGGAAGCGG
TCTGATGGGGAGGCGCTCGTTACTGTCAGGTTGGCTATGGAGCAGATGAAGATGGCTAAGAAGGTTTCTGATCGA
CGACGTGATTGA
Transcript >Ophcf2|04208
ATGCGCAGCGGAAGAATCTGGCATCGCTGTCTCTTACAGGCTTCGAGATGTCCATCGTGGCAGCTCCCCGTTCGA
ATAAGCAACGCAGCCTCTTGTCGGAGTCGTCGCCAGACTCGCCTTTACAGCGCTGTCTCCTCCGATTCTCTCGCT
GAAGAGCCGATCGAGAGAATCATCAGCTGGGAGGAGCGCCTTTTTGGGCCGACGCCCCCTACTGAGACGGCGCTG
AAGCAGTCCAGCATTGAAGAGCTTTCGACGGCGCTGATGGCCATGAGGCCTCCGCAAGAATGGAAGCCTGCTTTC
GGGCAGAATTTCGATCGTCACAGCCGAATTATTCAGATTGTGCGGCACATGGTCGGCGTACGGAACCAGGCGCCG
AATCTATTCATCTACGAATGCATGATGGACGCCATGGCTGACCCCCTGGGATCGGCCGACGGCGTTCAGAAGCTG
CTCGAAGACATGCAGTCTCAGGGCATCAAGCCATCCCTGGCTATATGCTACAGCGCGCTGGCCGCGCTGGCCGTC
CATCCCGACTACAAGCTACGACAGGACGTGCTGACCCTCATGCGCGATCTGTGGTTCCCCGTCGACACGGCGGCA
CAGCAGAACGTAGTCGTCGGCCTGCTTCGCGACGAGCAATACGAGCTGGCGTATGCGAGACTGATGCGCATGATA
GAGCAGGATGCCCGGATCGAAGCATGGGTTCTCGATCTCTTCATCATGGTGTTTGGAAAGCTCGGCTACCTGGAC
GAGATGCTGGTGCTGATGCATCATCGGAGGACCATCGAAGGGGCATCGGAAGAGGTCATGACGACCTTGTTCTAC
TATCTCCTAGACGTCTGTAGCGAGGCTTTTCACCTTGACGGCACCGTCTTCGCCTGGGAGGCGACGGTCAAGAAC
TCCAAGGTGCAGCCGCCGGATGGCATCGTGGAGAATGTGCTGGCAACGGCGGCTCGACACGGCAAGCCGCAGCTG
GCGACGGAAGCACTAGATATGCTCTCGAAACGGGCATGGAACCTGCTACCTCACCACTATGAGGCCGTCGTCGAG
GCCTTTGCGGCCAGCGGCGACATGGCGGGCGCGCTGCGAATCCTCTGCATCATGCGCCGCAAGCGAGACATCCTC
ATCAAGCGCGATCACACGCGCTCCCTCAAGCAGGCCATGGAGCAAAGCCCTACACTCGTGGCCCGAGCCGAAGCA
GCAGCCCGCGCCCTCGCAGCAGAGCAGAAGCTTCCAACCGCCCTAGTAGGTGCCATCGTCGAGGCGCGCGCCGAA
ATATCCGATAGCGAGGCAGCCATGCCCCTATACAACGACATGTCCAGCCTCTGCGACACAGCCGCCGACCCGCTA
ACGATGCAGACGCTCATGGAGCACACAACCAGCAACGACACGCTCCGGACCATAGCCTGCCAATACGCCGCTTCC
GTTCCTCCCGGCTCCGATCCGCGCCGCCACCCTCGCGACTACATCAAGCTGATACCCGCCTGCGCGGCCGCCGGT
GAGATGGACTTGGCCTTTCGCTTCGCCATCCATGCTGTCGGCTCGGGCCGATCCAGAGAGCCGCTGACTTGGTTC
AAGCCATTGATGGACTACGCTGCTGCGCGCGAGGACAGTCGTATTTGGCTTATTGTTGAGGAGTTGAGGAAGCGG
TCTGATGGGGAGGCGCTCGTTACTGTCAGGTTGGCTATGGAGCAGATGAAGATGGCTAAGAAGGTTTCTGATCGA
CGACGTGATTGA
Gene >Ophcf2|04208
ATGCGCAGCGGAAGAATCTGGCATCGCTGTCTCTTACAGGCTTCGAGATGTCCATCGTGGCAGCTCCCCGTTCGA
ATAAGCAACGCAGCCTCTTGTCGGAGTCGTCGCCAGACTCGCCTTTACAGCGCTGTCTCCTCCGATTCTCTCGCT
GAAGAGCCGATCGAGAGAATCATCAGCTGGGAGGAGCGCCTTTTTGGGCCGACGCCCCCTACTGAGACGGCGCTG
AAGCAGTCCAGCATTGAAGAGCTTTCGACGGCGCTGATGGCCATGAGGCCTCCGCAAGAATGGAAGCCTGCTTTC
GGGCAGAATTTCGATCGTCACAGCCGAATTATTCAGATTGTGCGGCACATGGTCGGCGTACGGAACCAGGCGCCG
AATCTATTCATCTACGAATGCATGATGGACGCCATGGCTGACCCCCTGGGATCGGCCGACGGCGTTCAGAAGCTG
CTCGAAGACATGCAGTCTCAGGGCATCAAGCCATCCCTGGCTATATGCTACAGCGCGCTGGCCGCGCTGGCCGTC
CATCCCGACTACAAGCTACGACAGGACGTGCTGACCCTCATGCGCGATCTGTGGTTCCCCGTCGACACGGCGGCA
CAGCAGAACGTAGTCGTCGGCCTGCTTCGCGACGAGCAATACGAGCTGGCGTATGCGAGACTGATGCGCATGATA
GAGCAGGATGCCCGGATCGAAGCATGGGTTCTCGATCTCTTCATCATGGTGTTTGGAAAGCTCGGCTACCTGGAC
GAGATGCTGGTGCTGATGCATCATCGGAGGACCATCGAAGGGGCATCGGAAGAGGTCATGACGACCTTGTTCTAC
TATCTCCTAGACGTCTGTAGCGAGGCTTTTCACCTTGACGGCACCGTCTTCGCCTGGGAGGCGACGGTCAAGAAC
TCCAAGGTGCAGCCGCCGGATGGCATCGTGGAGAATGTGCTGGCAACGGCGGCTCGACACGGCAAGCCGCAGCTG
GCGACGGAAGCACTAGATATGCTCTCGAAACGGGCATGGAACCTGCTACCTCACCACTATGAGGCCGTCGTCGAG
GCCTTTGCGGCCAGCGGCGACATGGCGGGCGCGCTGCGAATCCTCTGCATCATGCGCCGCAAGCGAGACATCCTC
ATCAAGCGCGATCACACGCGCTCCCTCAAGCAGGCCATGGAGCAAAGCCCTACACTCGTGGCCCGAGCCGAAGCA
GCAGCCCGCGCCCTCGCAGCAGAGCAGAAGCTTCCAACCGCCCTAGTAGGTGCCATCGTCGAGGCGCGCGCCGAA
ATATCCGATAGCGAGGCAGCCATGCCCCTATACAACGACATGTCCAGCCTCTGCGACACAGCCGCCGACCCGCTA
ACGATGCAGACGCTCATGGAGCACACAACCAGCAACGACACGCTCCGGACCATAGCCTGCCAATACGCCGCTTCC
GTTCCTCCCGGCTCCGATCCGCGCCGCCACCCTCGCGACTACATCAAGCTGATACCCGCCTGCGCGGCCGCCGGT
GAGATGGACTTGGCCTTTCGCTTCGCCATCCATGCTGTCGGCTCGGGCCGATCCAGAGAGCCGCTGACTTGGTTC
AAGCCATTGATGGACTACGCTGCTGCGCGCGAGGACAGTCGTATTTGGCTTATTGTTGAGGAGTTGAGGAAGCGG
TCTGATGGGGAGGCGCTCGTTACTGTCAGGTTGGCTATGGAGCAGATGAAGATGGCTAAGAAGGTTTCTGATCGA
CGACGTGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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