© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04203 |
| Gene name | |
| Location | scaffold_04:1135613..1136264 |
| Strand | + |
| Gene length (bp) | 651 |
| Transcript length (bp) | 462 |
| Coding sequence length (bp) | 462 |
| Protein length (aa) | 154 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14853 | Fis1_TPR_C | Fis1 C-terminal tetratricopeptide repeat | 1.4E-25 | 74 | 126 |
| PF14852 | Fis1_TPR_N | Fis1 N-terminal tetratricopeptide repeat | 1.1E-16 | 37 | 67 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 125 | 147 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 261.26 | 147.60 | 374.93 |
| Alive | In ants, during behavior modification | 310.90 | 177.68 | 444.11 |
| Dead | In ants, recently dead | 316.29 | 181.04 | 451.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.389363 | no |
| Alive | Dead | 0.934082 | no |
| Dead | Fungus | 0.335874 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04203 MVAELPYALDAETPLNPSELNVLRAQYEKEGEMVGVQTKFNYAWGLVKSNARSDQQLGVRLLSDIFRLSPERRRE CLYYLALGNYKLGNYSEARRYNDLLLDKEPANLQASDLRQLIDNRVAKEGLMGVAIVSGISIAAGVLGAFVFRNA RRR* |
| Coding | >Ophcf2|04203 ATGGTCGCAGAACTACCTTACGCCCTCGACGCAGAGACGCCTCTGAACCCATCCGAACTCAACGTCCTGCGTGCG CAATACGAAAAGGAGGGCGAAATGGTCGGCGTACAGACAAAATTCAATTACGCCTGGGGCCTAGTAAAATCAAAC GCCCGTTCCGACCAACAGCTCGGCGTCCGTCTCCTCTCCGACATCTTCCGCCTTTCTCCCGAGCGCCGCCGTGAA TGTCTCTACTACCTCGCACTAGGGAACTACAAGCTCGGAAACTACAGCGAAGCACGCCGCTACAACGATCTCCTC CTCGACAAGGAGCCCGCCAATCTACAGGCCTCGGACCTTCGCCAGCTGATTGACAACAGAGTCGCCAAGGAAGGC CTCATGGGCGTCGCCATTGTCAGTGGTATCAGCATTGCTGCCGGAGTTCTCGGAGCCTTTGTCTTCAGAAACGCC CGTCGGAGATGA |
| Transcript | >Ophcf2|04203 ATGGTCGCAGAACTACCTTACGCCCTCGACGCAGAGACGCCTCTGAACCCATCCGAACTCAACGTCCTGCGTGCG CAATACGAAAAGGAGGGCGAAATGGTCGGCGTACAGACAAAATTCAATTACGCCTGGGGCCTAGTAAAATCAAAC GCCCGTTCCGACCAACAGCTCGGCGTCCGTCTCCTCTCCGACATCTTCCGCCTTTCTCCCGAGCGCCGCCGTGAA TGTCTCTACTACCTCGCACTAGGGAACTACAAGCTCGGAAACTACAGCGAAGCACGCCGCTACAACGATCTCCTC CTCGACAAGGAGCCCGCCAATCTACAGGCCTCGGACCTTCGCCAGCTGATTGACAACAGAGTCGCCAAGGAAGGC CTCATGGGCGTCGCCATTGTCAGTGGTATCAGCATTGCTGCCGGAGTTCTCGGAGCCTTTGTCTTCAGAAACGCC CGTCGGAGATGA |
| Gene | >Ophcf2|04203 ATGGTCGCAGAACTACCTTGTGAGCCGATCCTCACTCTCCCTCCGGCCATATTCGCTAACCAAGTCCACCGCTTA CAGACGCCCTCGACGCAGAGACGTTCGTGTTCCTCCCCGTCTCTCCGCGATGCGTACGCTTTTGACTAACATGCC AGACAACAGGCCTCTGAACCCATCCGAACTCAACGTCCTGCGTGCGCAATACGAAAAGGAGGGCGAAATGGTCGG CGTACAGACAAAATTCAATTACGCCTGGGTACGTCTCTTCCCCATCCTTTCCCTCGTCAGCCATAATCATACTTA CCCTCTCACCTTCTCGTACAGGGCCTAGTAAAATCAAACGCCCGTTCCGACCAACAGCTCGGCGTCCGTCTCCTC TCCGACATCTTCCGCCTTTCTCCCGAGCGCCGCCGTGAATGTCTCTACTACCTCGCACTAGGGAACTACAAGCTC GGAAACTACAGCGAAGCACGCCGCTACAACGATCTCCTCCTCGACAAGGAGCCCGCCAATCTACAGGCCTCGGAC CTTCGCCAGCTGATTGACAACAGAGTCGCCAAGGAAGGCCTCATGGGCGTCGCCATTGTCAGTGGTATCAGCATT GCTGCCGGAGTTCTCGGAGCCTTTGTCTTCAGAAACGCCCGTCGGAGATGA |