Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|04203
Gene name
Location	scaffold_04:1135613..1136264
Strand	+
Gene length (bp)	651
Transcript length (bp)	462
Coding sequence length (bp)	462
Protein length (aa)	154

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14853	Fis1_TPR_C	Fis1 C-terminal tetratricopeptide repeat	1.4E-25	74	126
PF14852	Fis1_TPR_N	Fis1 N-terminal tetratricopeptide repeat	1.1E-16	37	67

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 41	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	125	147	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|04203 MVAELPYALDAETPLNPSELNVLRAQYEKEGEMVGVQTKFNYAWGLVKSNARSDQQLGVRLLSDIFRLSPERRRE CLYYLALGNYKLGNYSEARRYNDLLLDKEPANLQASDLRQLIDNRVAKEGLMGVAIVSGISIAAGVLGAFVFRNA RRR*
Coding	>Ophcf2\|04203 ATGGTCGCAGAACTACCTTACGCCCTCGACGCAGAGACGCCTCTGAACCCATCCGAACTCAACGTCCTGCGTGCG CAATACGAAAAGGAGGGCGAAATGGTCGGCGTACAGACAAAATTCAATTACGCCTGGGGCCTAGTAAAATCAAAC GCCCGTTCCGACCAACAGCTCGGCGTCCGTCTCCTCTCCGACATCTTCCGCCTTTCTCCCGAGCGCCGCCGTGAA TGTCTCTACTACCTCGCACTAGGGAACTACAAGCTCGGAAACTACAGCGAAGCACGCCGCTACAACGATCTCCTC CTCGACAAGGAGCCCGCCAATCTACAGGCCTCGGACCTTCGCCAGCTGATTGACAACAGAGTCGCCAAGGAAGGC CTCATGGGCGTCGCCATTGTCAGTGGTATCAGCATTGCTGCCGGAGTTCTCGGAGCCTTTGTCTTCAGAAACGCC CGTCGGAGATGA
Transcript	>Ophcf2\|04203 ATGGTCGCAGAACTACCTTACGCCCTCGACGCAGAGACGCCTCTGAACCCATCCGAACTCAACGTCCTGCGTGCG CAATACGAAAAGGAGGGCGAAATGGTCGGCGTACAGACAAAATTCAATTACGCCTGGGGCCTAGTAAAATCAAAC GCCCGTTCCGACCAACAGCTCGGCGTCCGTCTCCTCTCCGACATCTTCCGCCTTTCTCCCGAGCGCCGCCGTGAA TGTCTCTACTACCTCGCACTAGGGAACTACAAGCTCGGAAACTACAGCGAAGCACGCCGCTACAACGATCTCCTC CTCGACAAGGAGCCCGCCAATCTACAGGCCTCGGACCTTCGCCAGCTGATTGACAACAGAGTCGCCAAGGAAGGC CTCATGGGCGTCGCCATTGTCAGTGGTATCAGCATTGCTGCCGGAGTTCTCGGAGCCTTTGTCTTCAGAAACGCC CGTCGGAGATGA
Gene	>Ophcf2\|04203 ATGGTCGCAGAACTACCTTGTGAGCCGATCCTCACTCTCCCTCCGGCCATATTCGCTAACCAAGTCCACCGCTTA CAGACGCCCTCGACGCAGAGACGTTCGTGTTCCTCCCCGTCTCTCCGCGATGCGTACGCTTTTGACTAACATGCC AGACAACAGGCCTCTGAACCCATCCGAACTCAACGTCCTGCGTGCGCAATACGAAAAGGAGGGCGAAATGGTCGG CGTACAGACAAAATTCAATTACGCCTGGGTACGTCTCTTCCCCATCCTTTCCCTCGTCAGCCATAATCATACTTA CCCTCTCACCTTCTCGTACAGGGCCTAGTAAAATCAAACGCCCGTTCCGACCAACAGCTCGGCGTCCGTCTCCTC TCCGACATCTTCCGCCTTTCTCCCGAGCGCCGCCGTGAATGTCTCTACTACCTCGCACTAGGGAACTACAAGCTC GGAAACTACAGCGAAGCACGCCGCTACAACGATCTCCTCCTCGACAAGGAGCCCGCCAATCTACAGGCCTCGGAC CTTCGCCAGCTGATTGACAACAGAGTCGCCAAGGAAGGCCTCATGGGCGTCGCCATTGTCAGTGGTATCAGCATT GCTGCCGGAGTTCTCGGAGCCTTTGTCTTCAGAAACGCCCGTCGGAGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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