© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04192 |
| Gene name | |
| Location | scaffold_04:1113166..1115847 |
| Strand | - |
| Gene length (bp) | 2681 |
| Transcript length (bp) | 2460 |
| Coding sequence length (bp) | 2460 |
| Protein length (aa) | 820 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00654 | Voltage_CLC | Voltage gated chloride channel | 2.6E-86 | 175 | 556 |
| PF00571 | CBS | CBS domain | 2.7E-04 | 689 | 735 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005247 | voltage-gated chloride channel activity | Yes |
| GO:0006821 | chloride transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015267 | channel activity | No |
| GO:0003674 | molecular_function | No |
| GO:0015698 | inorganic anion transport | No |
| GO:0005215 | transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005244 | voltage-gated ion channel activity | No |
| GO:0006810 | transport | No |
| GO:0022836 | gated channel activity | No |
| GO:0009987 | cellular process | No |
| GO:0022832 | voltage-gated channel activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008308 | voltage-gated anion channel activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006820 | anion transport | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| GO:0005254 | chloride channel activity | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| GO:0005253 | anion channel activity | No |
| GO:0051179 | localization | No |
| GO:0005216 | ion channel activity | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1269 | 0.1494 | 0.0228 | 0.386 | 0.1377 | 0.0114 | 0.3224 | 0.6615 | 0.5315 | 0.0178 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 99 | 121 | 22 |
| 2 | 167 | 189 | 22 |
| 3 | 210 | 232 | 22 |
| 4 | 267 | 289 | 22 |
| 5 | 302 | 324 | 22 |
| 6 | 344 | 366 | 22 |
| 7 | 379 | 401 | 22 |
| 8 | 432 | 454 | 22 |
| 9 | 461 | 483 | 22 |
| 10 | 508 | 530 | 22 |
| 11 | 537 | 559 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 190 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04192 MNPPSASFGRHRRPSISSRLYSADGGEAAVATGTGRAPIDEAIAEIKRYEDFSTIDWVQDAAREQARRKFRRRRA AGLYVRGGSGWRYRLWAWYDAAQGWIVVTIIGVAIGLNAAFLNIITEWLSDIKMGYCSTAFYLNQNFCCWGERNG CEHWHRWAGFEPLNYLLYIVFATLFAFVSATLVKSFAPYAAGSGISEIKCIIAGFVMKGFLGLRTLLIKSVCLPL AIASGLSVGKEGPSVHYAVCTGNVVSRLFTKYRGNAGKTREILSACAAAGVAVAFGSPIGGVLFSLEEMSNYFPL KTMWRSYFCALVATAVLAAMNPFRTGQLVMFQVSYDRDWHFFEVLFYVVIGLFGGLYGALVIKWNLRAQAFRKKY LTRYAVLEATLLAAATAVVAYPNAILRIDMTESMEQLFLECEAGADHHGLCESDRRVANVTSLVLATVLRIFLVI ISYGCKVPAGIFVPSMAIGASFGRTVGILVQALHEANPTGLFFSACKVDEPCITPGTYAFLGAAAALSGIMHITV SVVVIMFELTGALTYILPTMIVVGVTKAVSDWFGKGGIADRMIWFSGFPFLDNKEDHNFGVPVSHVMGNSVVSLP VDGLSLGQVEQLLAEDNYQGFPIVEDSRCKILAGYIGRPELQYGIDRIRRERTVVDPSARCVFGRPAEPTAASTD AAATLDLSGYVDTTPVRVHPKLPLETVMELFRKIGPRVILIEYHGRLTGLVTVKDCLKYQFQVEASENPKDDPRI LEGQAQLWAALRRIGRWVSDRLWSISGGRIRLGGRSEQGSDRSRGGSILDGDEESVDEGLEMESRRREW* |
| Coding | >Ophcf2|04192 ATGAATCCACCATCCGCGTCCTTCGGCCGTCACCGCCGCCCGTCCATCAGCTCGCGCCTATACAGCGCAGACGGC GGCGAGGCTGCTGTGGCGACGGGCACGGGCAGGGCGCCCATCGACGAGGCCATAGCCGAGATCAAGCGCTACGAG GATTTTTCTACCATCGACTGGGTGCAGGATGCGGCTCGCGAACAGGCGAGACGCAAGTTTCGTCGCAGACGGGCG GCTGGACTCTACGTCCGCGGCGGCTCTGGGTGGCGGTATCGGCTTTGGGCATGGTATGATGCGGCTCAGGGATGG ATCGTCGTCACCATCATTGGTGTTGCCATTGGGCTTAACGCCGCTTTTCTCAACATCATTACCGAGTGGTTGTCG GATATCAAGATGGGCTACTGCTCGACTGCCTTTTATCTCAATCAGAACTTCTGCTGCTGGGGCGAGCGGAACGGC TGTGAGCACTGGCATCGATGGGCCGGCTTCGAACCTCTCAACTACTTGCTTTACATTGTCTTTGCTACGCTCTTC GCCTTCGTTTCGGCCACGCTGGTCAAGTCATTTGCGCCCTACGCGGCCGGCTCAGGCATCTCGGAGATCAAGTGC ATCATCGCCGGCTTCGTCATGAAAGGCTTCCTCGGCCTCCGCACGCTGCTGATAAAGTCTGTCTGCCTGCCACTG GCCATCGCCTCAGGACTATCTGTCGGTAAGGAGGGCCCCAGCGTGCATTACGCCGTCTGCACCGGCAACGTCGTC TCGCGCCTCTTCACCAAGTATCGCGGGAACGCGGGCAAGACGCGGGAGATCCTCAGCGCCTGCGCGGCTGCCGGT GTCGCTGTCGCCTTCGGGAGTCCCATCGGCGGCGTCCTCTTCTCGCTCGAGGAGATGTCCAATTACTTTCCCCTC AAGACGATGTGGCGCAGCTACTTTTGCGCTCTCGTCGCTACGGCTGTCCTGGCGGCCATGAACCCCTTTCGCACC GGCCAGCTCGTCATGTTCCAGGTCAGCTACGACCGTGACTGGCACTTCTTTGAGGTGCTTTTCTACGTCGTCATC GGTCTGTTCGGCGGCCTCTATGGCGCTCTCGTCATCAAGTGGAATCTGCGAGCTCAGGCTTTTCGCAAGAAGTAT CTCACCCGTTATGCCGTCCTCGAGGCCACCCTGCTGGCGGCTGCCACCGCCGTCGTCGCGTATCCCAACGCCATC CTCCGCATCGACATGACGGAGAGCATGGAGCAGCTCTTCCTCGAGTGTGAGGCTGGCGCGGACCATCACGGCCTC TGCGAGTCCGATCGCCGCGTGGCCAACGTGACCTCACTCGTTCTGGCCACCGTCCTCAGGATCTTCCTCGTCATC ATCTCGTATGGCTGCAAGGTGCCGGCCGGCATCTTCGTCCCGTCTATGGCTATCGGCGCCTCCTTCGGCCGCACC GTCGGCATACTCGTTCAGGCGCTGCACGAGGCCAATCCGACCGGACTCTTCTTCTCCGCCTGCAAGGTCGACGAG CCCTGCATCACACCGGGCACGTACGCCTTCCTGGGCGCTGCCGCCGCTCTGAGCGGCATCATGCACATTACCGTG TCCGTCGTCGTCATCATGTTTGAGCTGACAGGCGCCCTGACTTACATACTGCCCACCATGATCGTCGTCGGCGTC ACAAAGGCCGTGAGCGACTGGTTCGGTAAGGGGGGCATTGCTGACCGTATGATCTGGTTCAGCGGCTTCCCCTTC CTCGACAATAAGGAGGATCACAACTTTGGCGTGCCCGTTTCGCACGTCATGGGGAACTCAGTCGTGTCCCTGCCC GTCGACGGTTTGAGCCTCGGCCAGGTCGAGCAGCTGCTAGCGGAAGACAATTATCAGGGTTTCCCCATTGTCGAG GACAGCCGTTGCAAGATTCTGGCCGGTTACATCGGCCGGCCGGAGCTGCAGTACGGCATCGACCGCATCCGCCGG GAGCGGACAGTCGTCGACCCGAGCGCCCGATGCGTGTTTGGGCGGCCGGCCGAGCCGACGGCGGCCAGCACCGAC GCGGCAGCGACGCTCGACCTGAGCGGCTACGTCGACACGACGCCGGTCCGGGTTCATCCCAAGCTTCCGCTCGAA ACGGTCATGGAGCTATTCCGCAAGATCGGGCCGCGGGTGATCCTCATCGAGTATCACGGCCGGCTGACGGGTCTG GTGACGGTCAAGGACTGCCTCAAGTATCAGTTCCAGGTGGAGGCGTCGGAGAATCCCAAGGACGACCCGCGGATA CTGGAGGGCCAAGCGCAGCTGTGGGCGGCGCTGCGTCGGATTGGCCGCTGGGTGTCGGACCGGTTGTGGAGCATA TCCGGGGGCAGGATACGGCTCGGGGGCCGGAGCGAGCAGGGTTCGGACCGGAGTAGGGGCGGTTCCATACTCGAT GGCGACGAGGAATCGGTTGACGAGGGCTTGGAGATGGAGAGTCGGCGTAGGGAGTGGTAG |
| Transcript | >Ophcf2|04192 ATGAATCCACCATCCGCGTCCTTCGGCCGTCACCGCCGCCCGTCCATCAGCTCGCGCCTATACAGCGCAGACGGC GGCGAGGCTGCTGTGGCGACGGGCACGGGCAGGGCGCCCATCGACGAGGCCATAGCCGAGATCAAGCGCTACGAG GATTTTTCTACCATCGACTGGGTGCAGGATGCGGCTCGCGAACAGGCGAGACGCAAGTTTCGTCGCAGACGGGCG GCTGGACTCTACGTCCGCGGCGGCTCTGGGTGGCGGTATCGGCTTTGGGCATGGTATGATGCGGCTCAGGGATGG ATCGTCGTCACCATCATTGGTGTTGCCATTGGGCTTAACGCCGCTTTTCTCAACATCATTACCGAGTGGTTGTCG GATATCAAGATGGGCTACTGCTCGACTGCCTTTTATCTCAATCAGAACTTCTGCTGCTGGGGCGAGCGGAACGGC TGTGAGCACTGGCATCGATGGGCCGGCTTCGAACCTCTCAACTACTTGCTTTACATTGTCTTTGCTACGCTCTTC GCCTTCGTTTCGGCCACGCTGGTCAAGTCATTTGCGCCCTACGCGGCCGGCTCAGGCATCTCGGAGATCAAGTGC ATCATCGCCGGCTTCGTCATGAAAGGCTTCCTCGGCCTCCGCACGCTGCTGATAAAGTCTGTCTGCCTGCCACTG GCCATCGCCTCAGGACTATCTGTCGGTAAGGAGGGCCCCAGCGTGCATTACGCCGTCTGCACCGGCAACGTCGTC TCGCGCCTCTTCACCAAGTATCGCGGGAACGCGGGCAAGACGCGGGAGATCCTCAGCGCCTGCGCGGCTGCCGGT GTCGCTGTCGCCTTCGGGAGTCCCATCGGCGGCGTCCTCTTCTCGCTCGAGGAGATGTCCAATTACTTTCCCCTC AAGACGATGTGGCGCAGCTACTTTTGCGCTCTCGTCGCTACGGCTGTCCTGGCGGCCATGAACCCCTTTCGCACC GGCCAGCTCGTCATGTTCCAGGTCAGCTACGACCGTGACTGGCACTTCTTTGAGGTGCTTTTCTACGTCGTCATC GGTCTGTTCGGCGGCCTCTATGGCGCTCTCGTCATCAAGTGGAATCTGCGAGCTCAGGCTTTTCGCAAGAAGTAT CTCACCCGTTATGCCGTCCTCGAGGCCACCCTGCTGGCGGCTGCCACCGCCGTCGTCGCGTATCCCAACGCCATC CTCCGCATCGACATGACGGAGAGCATGGAGCAGCTCTTCCTCGAGTGTGAGGCTGGCGCGGACCATCACGGCCTC TGCGAGTCCGATCGCCGCGTGGCCAACGTGACCTCACTCGTTCTGGCCACCGTCCTCAGGATCTTCCTCGTCATC ATCTCGTATGGCTGCAAGGTGCCGGCCGGCATCTTCGTCCCGTCTATGGCTATCGGCGCCTCCTTCGGCCGCACC GTCGGCATACTCGTTCAGGCGCTGCACGAGGCCAATCCGACCGGACTCTTCTTCTCCGCCTGCAAGGTCGACGAG CCCTGCATCACACCGGGCACGTACGCCTTCCTGGGCGCTGCCGCCGCTCTGAGCGGCATCATGCACATTACCGTG TCCGTCGTCGTCATCATGTTTGAGCTGACAGGCGCCCTGACTTACATACTGCCCACCATGATCGTCGTCGGCGTC ACAAAGGCCGTGAGCGACTGGTTCGGTAAGGGGGGCATTGCTGACCGTATGATCTGGTTCAGCGGCTTCCCCTTC CTCGACAATAAGGAGGATCACAACTTTGGCGTGCCCGTTTCGCACGTCATGGGGAACTCAGTCGTGTCCCTGCCC GTCGACGGTTTGAGCCTCGGCCAGGTCGAGCAGCTGCTAGCGGAAGACAATTATCAGGGTTTCCCCATTGTCGAG GACAGCCGTTGCAAGATTCTGGCCGGTTACATCGGCCGGCCGGAGCTGCAGTACGGCATCGACCGCATCCGCCGG GAGCGGACAGTCGTCGACCCGAGCGCCCGATGCGTGTTTGGGCGGCCGGCCGAGCCGACGGCGGCCAGCACCGAC GCGGCAGCGACGCTCGACCTGAGCGGCTACGTCGACACGACGCCGGTCCGGGTTCATCCCAAGCTTCCGCTCGAA ACGGTCATGGAGCTATTCCGCAAGATCGGGCCGCGGGTGATCCTCATCGAGTATCACGGCCGGCTGACGGGTCTG GTGACGGTCAAGGACTGCCTCAAGTATCAGTTCCAGGTGGAGGCGTCGGAGAATCCCAAGGACGACCCGCGGATA CTGGAGGGCCAAGCGCAGCTGTGGGCGGCGCTGCGTCGGATTGGCCGCTGGGTGTCGGACCGGTTGTGGAGCATA TCCGGGGGCAGGATACGGCTCGGGGGCCGGAGCGAGCAGGGTTCGGACCGGAGTAGGGGCGGTTCCATACTCGAT GGCGACGAGGAATCGGTTGACGAGGGCTTGGAGATGGAGAGTCGGCGTAGGGAGTGGTAG |
| Gene | >Ophcf2|04192 ATGAATCCACCATCCGCGTCCTTCGGCCGTCACCGCCGCCCGTCCATCAGCTCGCGCCTATACAGCGCAGACGGC GGCGAGGCTGCTGTGGCGACGGGCACGGGCAGGGCGCCCATCGACGAGGCCATAGCCGAGATCAAGCGCTACGAG GTGAGACGGCTTCCTTCGATTAGCATTGGGATTGGTCTTTGCTGATCCGAGACGACTAGGATTTTTCTACCATCG GTGCGGACGGACCTGGATCCAGGCTGGCGTTGGGCTGACGAGCTTCCTTCCTTTCAGACTGGGTGCAGGATGCGG CTCGCGAACAGGCGAGACGCAAGTTTCGTCGCAGACGGGCGGCTGGACTCTACGTCCGCGGCGGCTCTGGGTGGC GGTATCGGCTTTGGGCATGGTATGATGCGGCTCAGGGATGGATCGTCGTCACCATCATTGGTGTTGCCATTGGGC TTAACGCCGCTTTTCTCAACATCATTACCGAGTGGTTGTCGGATATCAAGATGGGCTACTGCTCGACTGCCTTTT ATCTCAATCAGAACTTCTGCTGCTGGGGCGAGCGGAACGGTATGTTTGTCGCTTGTCTCTGGTTCTGGCCCTGAC GAACGGTTAGGCTGTGAGCACTGGCATCGATGGGCCGGCTTCGAACCTCTCAACTACTTGCTTTACATTGTCTTT GCTGTATGTTTTTTCGAACCCCAATGTCCGCATGTTATGGATGCCCACTCATGACATGGCAGACGCTCTTCGCCT TCGTTTCGGCCACGCTGGTCAAGTCATTTGCGCCCTACGCGGCCGGCTCAGGCATCTCGGAGATCAAGTGCATCA TCGCCGGCTTCGTCATGAAAGGCTTCCTCGGCCTCCGCACGCTGCTGATAAAGTCTGTCTGCCTGCCACTGGCCA TCGCCTCAGGACTATCTGTCGGTAAGGAGGGCCCCAGCGTGCATTACGCCGTCTGCACCGGCAACGTCGTCTCGC GCCTCTTCACCAAGTATCGCGGGAACGCGGGCAAGACGCGGGAGATCCTCAGCGCCTGCGCGGCTGCCGGTGTCG CTGTCGCCTTCGGGAGTCCCATCGGCGGCGTCCTCTTCTCGCTCGAGGAGATGTCCAATTACTTTCCCCTCAAGA CGATGTGGCGCAGCTACTTTTGCGCTCTCGTCGCTACGGCTGTCCTGGCGGCCATGAACCCCTTTCGCACCGGCC AGCTCGTCATGTTCCAGGTCAGCTACGACCGTGACTGGCACTTCTTTGAGGTGCTTTTCTACGTCGTCATCGGTC TGTTCGGCGGCCTCTATGGCGCTCTCGTCATCAAGTGGAATCTGCGAGCTCAGGCTTTTCGCAAGAAGTATCTCA CCCGTTATGCCGTCCTCGAGGCCACCCTGCTGGCGGCTGCCACCGCCGTCGTCGCGTATCCCAACGCCATCCTCC GCATCGACATGACGGAGAGCATGGAGCAGCTCTTCCTCGAGTGTGAGGCTGGCGCGGACCATCACGGCCTCTGCG AGTCCGATCGCCGCGTGGCCAACGTGACCTCACTCGTTCTGGCCACCGTCCTCAGGATCTTCCTCGTCATCATCT CGTATGGCTGCAAGGTGCCGGCCGGCATCTTCGTCCCGTCTATGGCTATCGGCGCCTCCTTCGGCCGCACCGTCG GCATACTCGTTCAGGCGCTGCACGAGGCCAATCCGACCGGACTCTTCTTCTCCGCCTGCAAGGTCGACGAGCCCT GCATCACACCGGGCACGTACGCCTTCCTGGGCGCTGCCGCCGCTCTGAGCGGCATCATGCACATTACCGTGTCCG TCGTCGTCATCATGTTTGAGCTGACAGGCGCCCTGACTTACATACTGCCCACCATGATCGTCGTCGGCGTCACAA AGGCCGTGAGCGACTGGTTCGGTAAGGGGGGCATTGCTGACCGTATGATCTGGTTCAGCGGCTTCCCCTTCCTCG ACAATAAGGAGGATCACAACTTTGGCGTGCCCGTTTCGCACGTCATGGGGAACTCAGTCGTGTCCCTGCCCGTCG ACGGTTTGAGCCTCGGCCAGGTCGAGCAGCTGCTAGCGGAAGACAATTATCAGGGTTTCCCCATTGTCGAGGACA GCCGTTGCAAGATTCTGGCCGGTTACATCGGCCGGCCGGAGCTGCAGTACGGCATCGACCGCATCCGCCGGGAGC GGACAGTCGTCGACCCGAGCGCCCGATGCGTGTTTGGGCGGCCGGCCGAGCCGACGGCGGCCAGCACCGACGCGG CAGCGACGCTCGACCTGAGCGGCTACGTCGACACGACGCCGGTCCGGGTTCATCCCAAGCTTCCGCTCGAAACGG TCATGGAGCTATTCCGCAAGATCGGGCCGCGGGTGATCCTCATCGAGTATCACGGCCGGCTGACGGGTCTGGTGA CGGTCAAGGACTGCCTCAAGTATCAGTTCCAGGTGGAGGCGTCGGAGAATCCCAAGGACGACCCGCGGATACTGG AGGGCCAAGCGCAGCTGTGGGCGGCGCTGCGTCGGATTGGCCGCTGGGTGTCGGACCGGTTGTGGAGCATATCCG GGGGCAGGATACGGCTCGGGGGCCGGAGCGAGCAGGGTTCGGACCGGAGTAGGGGCGGTTCCATACTCGATGGCG ACGAGGAATCGGTTGACGAGGGCTTGGAGATGGAGAGTCGGCGTAGGGAGTGGTAG |