© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|04182 |
| Gene name | |
| Location | scaffold_04:1089324..1091288 |
| Strand | - |
| Gene length (bp) | 1964 |
| Transcript length (bp) | 1632 |
| Coding sequence length (bp) | 1632 |
| Protein length (aa) | 544 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 5.5E-40 | 25 | 477 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 9.0E-08 | 34 | 170 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 22 | 44 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 93 | 112 | 19 |
| 4 | 122 | 144 | 22 |
| 5 | 151 | 173 | 22 |
| 6 | 195 | 217 | 22 |
| 7 | 307 | 329 | 22 |
| 8 | 365 | 387 | 22 |
| 9 | 394 | 416 | 22 |
| 10 | 426 | 448 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04182 MRGGSGAGKGSGQAVAFPTQQMFVLACCRICEPIAFMSIFPYIYYMIEDFHIARDASQISVYAGMVTSAFTLAEF ATGVMWGRLSDKIGRKPVLLTGLLGTALSVLAFGFAPNLPVALGARALGGLLNGNIGVLQTTVAELVTVREQQPR AYTIMPMVWCIGSIIGPIIGGALARPCISYPDLFPRGTIWDRFPYLLPNLFSAAAVLVGVVIGILFLDETHADKK LQRDHGRELGRRLVALFRRATVCKCREKQGLFMVPDSKRGAYGACGSVRDEPLPAYRSRESSPKLSPQSIRAPTK NGPSKTVVFTRPVIMNIVSYGILAFHTMTFDQLFPVFLSTSPLQHPIRELPFKFADGFGLDTKTIGVVMSCQGVY SLLSNFVIVPPVTRRLGSLRLFRMLAFSYFALYLVTPYLVLLPEDVQMPAVYALVIWKCTYATMAYPNNAILLAN SAPSKQVLGTINGVAASTASLCRALGPTLSGVLYAVGLKTGYSGLAWWFSGLVTIVGAYLSSRITEAQPAPAEEE VEEALLDDALLYSEDEAV* |
| Coding | >Ophcf2|04182 ATGAGAGGAGGAAGCGGTGCTGGAAAGGGGTCAGGCCAGGCGGTGGCCTTTCCTACCCAGCAGATGTTCGTTCTA GCCTGCTGCCGGATTTGCGAGCCCATCGCCTTCATGTCCATCTTCCCTTACATCTACTACATGATCGAGGACTTT CACATCGCCCGCGACGCCAGCCAAATCTCCGTCTACGCCGGCATGGTGACGTCGGCTTTCACCCTGGCCGAGTTC GCGACGGGCGTCATGTGGGGGCGCTTAAGTGACAAGATCGGCCGGAAACCCGTGCTGTTGACCGGTCTGCTGGGC ACTGCTCTGAGCGTGCTGGCCTTTGGATTCGCCCCGAACCTGCCCGTTGCTCTGGGAGCTCGCGCGCTCGGCGGC CTCCTGAACGGGAATATCGGCGTCCTGCAGACGACCGTGGCCGAGTTGGTGACGGTGAGGGAGCAGCAGCCTCGG GCCTATACCATCATGCCCATGGTGTGGTGCATTGGTTCCATCATCGGCCCCATCATCGGAGGCGCTCTGGCCCGG CCATGCATCAGCTATCCGGATCTGTTTCCGCGAGGCACCATCTGGGATCGCTTTCCTTACCTGCTGCCCAACTTG TTCAGCGCCGCCGCCGTCCTGGTCGGTGTCGTTATCGGCATCCTGTTCCTGGACGAGACGCACGCCGACAAGAAG CTGCAGAGGGATCACGGCCGCGAGCTCGGACGCCGCCTGGTTGCCCTGTTCCGTCGCGCTACCGTCTGCAAGTGC CGTGAGAAGCAGGGTCTTTTCATGGTGCCCGACTCGAAAAGGGGCGCATATGGTGCATGTGGGAGCGTCCGGGAC GAGCCGCTGCCTGCATATCGGAGCCGTGAGAGTTCGCCCAAGCTATCGCCCCAATCCATTCGCGCGCCCACGAAG AACGGTCCCTCCAAGACGGTTGTCTTTACCCGGCCCGTCATCATGAACATTGTGTCCTACGGCATCCTGGCTTTC CACACCATGACGTTTGATCAGCTCTTCCCCGTCTTTCTCAGCACCTCGCCACTTCAGCATCCCATACGGGAGCTC CCCTTCAAGTTCGCTGACGGCTTCGGGCTCGACACCAAGACCATTGGCGTCGTCATGTCGTGTCAGGGCGTCTAC TCGCTGCTCTCCAACTTCGTCATCGTTCCTCCGGTCACGCGACGGCTCGGCTCACTCCGGCTCTTCCGCATGCTC GCCTTTTCCTACTTTGCCCTCTACCTCGTCACGCCGTATCTGGTGCTCCTGCCCGAGGATGTGCAGATGCCGGCC GTTTACGCCCTCGTAATCTGGAAGTGCACCTACGCCACCATGGCCTACCCGAACAACGCCATCCTGCTGGCCAAC TCGGCTCCCAGCAAGCAAGTTTTGGGCACCATCAACGGTGTGGCGGCGTCGACGGCCAGCCTGTGTCGCGCTCTT GGGCCCACGCTGTCGGGAGTCCTGTACGCCGTCGGGCTGAAGACTGGATACTCGGGCCTCGCCTGGTGGTTCAGC GGGCTGGTGACGATTGTGGGCGCGTACCTGAGCTCGCGAATTACCGAGGCACAGCCTGCCCCGGCGGAAGAGGAG GTGGAAGAGGCGCTGCTGGACGATGCGCTTCTATACAGCGAGGACGAGGCCGTATGA |
| Transcript | >Ophcf2|04182 ATGAGAGGAGGAAGCGGTGCTGGAAAGGGGTCAGGCCAGGCGGTGGCCTTTCCTACCCAGCAGATGTTCGTTCTA GCCTGCTGCCGGATTTGCGAGCCCATCGCCTTCATGTCCATCTTCCCTTACATCTACTACATGATCGAGGACTTT CACATCGCCCGCGACGCCAGCCAAATCTCCGTCTACGCCGGCATGGTGACGTCGGCTTTCACCCTGGCCGAGTTC GCGACGGGCGTCATGTGGGGGCGCTTAAGTGACAAGATCGGCCGGAAACCCGTGCTGTTGACCGGTCTGCTGGGC ACTGCTCTGAGCGTGCTGGCCTTTGGATTCGCCCCGAACCTGCCCGTTGCTCTGGGAGCTCGCGCGCTCGGCGGC CTCCTGAACGGGAATATCGGCGTCCTGCAGACGACCGTGGCCGAGTTGGTGACGGTGAGGGAGCAGCAGCCTCGG GCCTATACCATCATGCCCATGGTGTGGTGCATTGGTTCCATCATCGGCCCCATCATCGGAGGCGCTCTGGCCCGG CCATGCATCAGCTATCCGGATCTGTTTCCGCGAGGCACCATCTGGGATCGCTTTCCTTACCTGCTGCCCAACTTG TTCAGCGCCGCCGCCGTCCTGGTCGGTGTCGTTATCGGCATCCTGTTCCTGGACGAGACGCACGCCGACAAGAAG CTGCAGAGGGATCACGGCCGCGAGCTCGGACGCCGCCTGGTTGCCCTGTTCCGTCGCGCTACCGTCTGCAAGTGC CGTGAGAAGCAGGGTCTTTTCATGGTGCCCGACTCGAAAAGGGGCGCATATGGTGCATGTGGGAGCGTCCGGGAC GAGCCGCTGCCTGCATATCGGAGCCGTGAGAGTTCGCCCAAGCTATCGCCCCAATCCATTCGCGCGCCCACGAAG AACGGTCCCTCCAAGACGGTTGTCTTTACCCGGCCCGTCATCATGAACATTGTGTCCTACGGCATCCTGGCTTTC CACACCATGACGTTTGATCAGCTCTTCCCCGTCTTTCTCAGCACCTCGCCACTTCAGCATCCCATACGGGAGCTC CCCTTCAAGTTCGCTGACGGCTTCGGGCTCGACACCAAGACCATTGGCGTCGTCATGTCGTGTCAGGGCGTCTAC TCGCTGCTCTCCAACTTCGTCATCGTTCCTCCGGTCACGCGACGGCTCGGCTCACTCCGGCTCTTCCGCATGCTC GCCTTTTCCTACTTTGCCCTCTACCTCGTCACGCCGTATCTGGTGCTCCTGCCCGAGGATGTGCAGATGCCGGCC GTTTACGCCCTCGTAATCTGGAAGTGCACCTACGCCACCATGGCCTACCCGAACAACGCCATCCTGCTGGCCAAC TCGGCTCCCAGCAAGCAAGTTTTGGGCACCATCAACGGTGTGGCGGCGTCGACGGCCAGCCTGTGTCGCGCTCTT GGGCCCACGCTGTCGGGAGTCCTGTACGCCGTCGGGCTGAAGACTGGATACTCGGGCCTCGCCTGGTGGTTCAGC GGGCTGGTGACGATTGTGGGCGCGTACCTGAGCTCGCGAATTACCGAGGCACAGCCTGCCCCGGCGGAAGAGGAG GTGGAAGAGGCGCTGCTGGACGATGCGCTTCTATACAGCGAGGACGAGGCCGTATGA |
| Gene | >Ophcf2|04182 ATGAGAGGAGGAAGCGGTGCTGGAAAGGGGTCAGGCCAGGCGGTGGCCTTTCCTACCCAGCAGATGTTCGTTCTA GGTAGGTAACGGGAAGTTTGTTGAGATTGTGGATCATGGTGAGAGTTGGAAGGCTGATTGTCTAGCCTGCTGCCG GATTTGCGAGCCCATCGCCTTCATGTCCATCTTCCCTTACATCTACTACATGATCGAGGACTTTCACATCGCCCG CGACGCCAGCCAAATCTCCGTCTACGCCGGCATGGTGACGTCGGCTTTCACCCTGGCCGAGTTCGCGACGGGCGT CATGTGGGGGCGCTTAAGTGACAAGATCGGCCGGAAACCCGTGCTGTTGACCGGTCTGCTGGGCACTGCTCTGAG CGTGCTGGCCTTTGGATTCGCCCCGAACCTGCCCGTTGCTCTGGGAGCTCGCGCGCTCGGCGGCCTCCTGAACGG GTATGCCGCCTTTTTTTTTTGGAGGGAGGGGGGGGGGTTTCTTGTTTTGCTTCTTCGCTGACCTTGGGCTCGTGA CAGGAATATCGGCGTCCTGCAGACGACCGTGGCCGAGTTGGTGACGGTGAGGGAGCAGCAGCGTGAGTGCCCAAT TTGTCCCGGCGGCCAATCCCCTGCTGACGTCTGCCACGCAGCTCGGGCCTATACCATCATGCCCATGGTGTGGTG CATTGGGTGCGTCCCCCCCCCCCCTTGCGTGTGAATGTGTGTGTGTGTGTATGTGTGTGTTGGACCCCTTCTCAT GACCTGACGCAGTTCCATCATCGGCCCCATCATCGGAGGCGCTCTGGCCCGGCCATGCATCAGCTATCCGGATCT GTTTCCGCGAGGCACCATCTGGGATCGCTTTCCTTACCTGCTGCCCAACTTGTTCAGCGCCGCCGCCGTCCTGGT CGGTGTCGTTATCGGCATCCTGTTCCTGGACGAGACGCACGCCGACAAGAAGCTGCAGAGGGATCACGGCCGCGA GCTCGGACGCCGCCTGGTTGCCCTGTTCCGTCGCGCTACCGTCTGCAAGTGCCGTGAGAAGCAGGGTCTTTTCAT GGTGCCCGACTCGAAAAGGGGCGCATATGGTGCATGTGGGAGCGTCCGGGACGAGCCGCTGCCTGCATATCGGAG CCGTGAGAGTTCGCCCAAGCTATCGCCCCAATCCATTCGCGCGCCCACGAAGAACGGTCCCTCCAAGACGGTTGT CTTTACCCGGCCCGTCATCATGAACATTGTGTCCTACGGCATCCTGGCTTTGTGCGTAACTACGACTTTACTCCG TCTGCCACCACTGAGCTAACACCATCACCAGCCACACCATGACGTTTGATCAGCTCTTCCCCGTCTTTCTCAGCA CCTCGCCACTTCAGCATCCCATACGGGAGCTCCCCTTCAAGTTCGCTGACGGCTTCGGGCTCGACACCAAGACCA TTGGCGTCGTCATGTCGTGTCAGGGCGTCTACTCGCTGCTCTCCAACTTCGTCATCGTTCCTCCGGTCACGCGAC GGCTCGGCTCACTCCGGCTCTTCCGCATGCTCGCCTTTTCCTACTTTGCCCTCTACCTCGTCACGCCGTATCTGG TGCTCCTGCCCGAGGATGTGCAGATGCCGGCCGTTTACGCCCTCGTAATCTGGAAGTGCACCTACGCCACCATGG CCTACCCGAACAACGCCATCCTGCTGGCCAACTCGGCTCCCAGCAAGCAAGTTTTGGGCACCATCAACGGTGTGG CGGCGTCGACGGCCAGCCTGTGTCGCGCTCTTGGGCCCACGCTGTCGGGAGTCCTGTACGCCGTCGGGCTGAAGA CTGGATACTCGGGCCTCGCCTGGTGGTTCAGCGGGCTGGTGACGATTGTGGGCGCGTACCTGAGCTCGCGAATTA CCGAGGCACAGCCTGCCCCGGCGGAAGAGGAGGTGGAAGAGGCGCTGCTGGACGATGCGCTTCTATACAGCGAGG ACGAGGCCGTATGA |