Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04147
Gene name
Locationscaffold_04:982206..983598
Strand+
Gene length (bp)1392
Transcript length (bp)1074
Coding sequence length (bp)1074
Protein length (aa) 358

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02453 Reticulon Reticulon 1.2E-34 79 237

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 92 114 22
2 118 140 22
3 177 199 22
4 203 225 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04147
MSDLHDAPAAANGGGTLEAARAQSAAAYEAITNGPVAQSVKDHSAKASSELSSLAASRKTPANPTATGQPLTHYH
SFFSELLSWKNPRASAIAYAAIVSSIFAARYLDVIRWAFKLSWMALAVTVSAEVAGKVALNHGLATQMRPRKYYT
VSRAAIDNMIGDVHELVNFFVIEGQRVLFAENPIASAAACVAAFIAYHLSKLVPYWGLAVIATTIAFVAPLIYIN
NQELIDHHLKNASDMIGAQTAQVRDVAQKQAGQLASMSKQYAGDYTGKVQEMLRGRGTSPVSSKKPEPVSKPEFV
SNPEPVSKPTPVTMPSPVNKPVDLPSPPSEEPLKVSEPVGNVPEAPVVPEPEPLIAS*
Coding >Ophcf2|04147
ATGTCTGACCTTCACGATGCGCCCGCCGCGGCCAACGGCGGTGGAACGCTCGAGGCGGCCAGAGCTCAGTCGGCT
GCTGCGTACGAAGCGATAACCAACGGACCTGTTGCACAGAGCGTCAAGGACCACTCTGCAAAGGCCTCGTCCGAG
CTGTCCAGCCTGGCAGCCTCCCGCAAGACACCCGCCAACCCGACTGCCACCGGTCAGCCCCTCACACACTATCAC
TCCTTCTTCTCGGAGCTTCTGTCGTGGAAAAACCCTCGTGCCAGCGCCATTGCCTATGCGGCCATCGTCTCTTCC
ATATTCGCTGCTAGATACCTCGATGTTATTCGTTGGGCCTTCAAGCTGTCGTGGATGGCCCTGGCCGTCACTGTC
AGCGCCGAGGTCGCCGGTAAAGTGGCCCTGAACCATGGCCTCGCCACCCAGATGAGGCCTCGCAAGTATTACACC
GTATCGCGAGCGGCCATCGATAACATGATTGGCGATGTCCACGAGCTGGTTAACTTCTTCGTCATCGAGGGTCAG
CGCGTCCTCTTTGCGGAGAATCCCATTGCCTCGGCTGCGGCTTGCGTCGCCGCCTTCATCGCCTACCATCTCTCC
AAGCTCGTCCCGTACTGGGGACTTGCCGTGATCGCGACGACGATTGCTTTCGTTGCTCCTCTCATCTACATCAAC
AACCAGGAGCTTATCGATCACCACCTCAAGAACGCGTCGGACATGATTGGTGCCCAGACGGCTCAGGTCCGAGAC
GTGGCCCAGAAGCAGGCTGGCCAGCTGGCCTCTATGAGCAAGCAGTATGCCGGCGACTACACCGGCAAGGTTCAG
GAGATGCTCCGTGGCCGTGGGACTTCACCCGTCTCGTCCAAGAAGCCGGAGCCCGTTTCGAAGCCCGAGTTCGTG
TCCAACCCGGAGCCCGTTTCTAAGCCGACACCCGTCACCATGCCGTCACCCGTCAACAAGCCTGTCGATCTCCCC
TCCCCGCCTAGCGAGGAGCCTCTCAAGGTGTCTGAGCCGGTGGGCAATGTTCCCGAGGCGCCCGTGGTGCCGGAG
CCGGAGCCCTTGATCGCCTCCTAG
Transcript >Ophcf2|04147
ATGTCTGACCTTCACGATGCGCCCGCCGCGGCCAACGGCGGTGGAACGCTCGAGGCGGCCAGAGCTCAGTCGGCT
GCTGCGTACGAAGCGATAACCAACGGACCTGTTGCACAGAGCGTCAAGGACCACTCTGCAAAGGCCTCGTCCGAG
CTGTCCAGCCTGGCAGCCTCCCGCAAGACACCCGCCAACCCGACTGCCACCGGTCAGCCCCTCACACACTATCAC
TCCTTCTTCTCGGAGCTTCTGTCGTGGAAAAACCCTCGTGCCAGCGCCATTGCCTATGCGGCCATCGTCTCTTCC
ATATTCGCTGCTAGATACCTCGATGTTATTCGTTGGGCCTTCAAGCTGTCGTGGATGGCCCTGGCCGTCACTGTC
AGCGCCGAGGTCGCCGGTAAAGTGGCCCTGAACCATGGCCTCGCCACCCAGATGAGGCCTCGCAAGTATTACACC
GTATCGCGAGCGGCCATCGATAACATGATTGGCGATGTCCACGAGCTGGTTAACTTCTTCGTCATCGAGGGTCAG
CGCGTCCTCTTTGCGGAGAATCCCATTGCCTCGGCTGCGGCTTGCGTCGCCGCCTTCATCGCCTACCATCTCTCC
AAGCTCGTCCCGTACTGGGGACTTGCCGTGATCGCGACGACGATTGCTTTCGTTGCTCCTCTCATCTACATCAAC
AACCAGGAGCTTATCGATCACCACCTCAAGAACGCGTCGGACATGATTGGTGCCCAGACGGCTCAGGTCCGAGAC
GTGGCCCAGAAGCAGGCTGGCCAGCTGGCCTCTATGAGCAAGCAGTATGCCGGCGACTACACCGGCAAGGTTCAG
GAGATGCTCCGTGGCCGTGGGACTTCACCCGTCTCGTCCAAGAAGCCGGAGCCCGTTTCGAAGCCCGAGTTCGTG
TCCAACCCGGAGCCCGTTTCTAAGCCGACACCCGTCACCATGCCGTCACCCGTCAACAAGCCTGTCGATCTCCCC
TCCCCGCCTAGCGAGGAGCCTCTCAAGGTGTCTGAGCCGGTGGGCAATGTTCCCGAGGCGCCCGTGGTGCCGGAG
CCGGAGCCCTTGATCGCCTCCTAG
Gene >Ophcf2|04147
ATGTCTGACCTTCACGATGCGCCCGCCGCGGCCAACGGCGGTGGAACGCTCGAGGCGGCCAGAGCTCGTAAGGTA
TGTGGTTTCGGTCGTCTTTTTTATCCTTTTGCCAGCTCGTGATACCTCGGAAATTGGGACCGCGGCAAACGCTGA
CAGGGATATTTAGTTCTCACTCTCTTCTTCCCGTGATGAAGGCTCACCTTGTTTCCTTCCCGCAGAGTCGGCTGC
TGCGTACGAAGCGATAACCAACGGTGAGCTTACCTCGGCTTTCTCTGCCCGCTCGACACGACTGACGTCACCCCC
TTCAGGACCTGTTGCACAGAGCGTCAAGGACCACTCTGCAAAGGCCTCGTCCGAGCTGTCCAGCCTGGCAGCCTC
CCGCAAGACACCCGCCAACCCGACTGCCACCGGTCAGCCCCTCACACACTATCACTCCTTCTTCTCGGAGCTTCT
GTCGTGGAAAAACCCTCGTATCTACCCCCCCAGCCCTTCTCGACGTGGTATTGATGGAGGCTGACATGCTACAGG
TGCCAGCGCCATTGCCTATGCGGCCATCGTCTCTTCCATATTCGCTGCTAGATACCTCGATGTTATTCGTTGGGC
CTTCAAGCTGTCGTGGATGGCCCTGGCCGTCACTGTCAGCGCCGAGGTCGCCGGTAAAGTGGCCCTGAACCATGG
CCTCGCCACCCAGATGAGGCCTCGCAAGTATTACACCGTATCGCGAGCGGCCATCGATAACATGATTGGCGATGT
CCACGAGCTGGTTAACTTCTTCGTCATCGAGGGTCAGCGCGTCCTCTTTGCGGAGAATCCCATTGCCTCGGCTGC
GGTGAGTGGCCCGTTGTTCCCGGACATATGGGAAAGACCTTGGCTAACCATGGACAGGCTTGCGTCGCCGCCTTC
ATCGCCTACCATCTCTCCAAGCTCGTCCCGTACTGGGGACTTGCCGTGATCGCGACGACGATTGCTTTCGTTGCT
CCTCTCATCTACATCAACAACCAGGAGCTTATCGATCACCACCTCAAGAACGCGTCGGACATGATTGGTGCCCAG
ACGGCTCAGGTCCGAGACGTGGCCCAGAAGCAGGCTGGCCAGCTGGCCTCTATGAGCAAGCAGTATGCCGGCGAC
TACACCGGCAAGGTTCAGGAGATGCTCCGTGGCCGTGGGACTTCACCCGTCTCGTCCAAGAAGCCGGAGCCCGTT
TCGAAGCCCGAGTTCGTGTCCAACCCGGAGCCCGTTTCTAAGCCGACACCCGTCACCATGCCGTCACCCGTCAAC
AAGCCTGTCGATCTCCCCTCCCCGCCTAGCGAGGAGCCTCTCAAGGTGTCTGAGCCGGTGGGCAATGTTCCCGAG
GCGCCCGTGGTGCCGGAGCCGGAGCCCTTGATCGCCTCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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