© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04104 |
| Gene name | |
| Location | scaffold_04:869330..869966 |
| Strand | - |
| Gene length (bp) | 636 |
| Transcript length (bp) | 396 |
| Coding sequence length (bp) | 396 |
| Protein length (aa) | 132 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08507 | COPI_assoc | COPI associated protein | 6.7E-32 | 6 | 122 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 33 | 52 | 19 |
| 3 | 64 | 86 | 22 |
| 4 | 90 | 112 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 184.67 | 96.74 | 272.61 |
| Alive | In ants, during behavior modification | 235.96 | 128.24 | 343.68 |
| Dead | In ants, recently dead | 203.25 | 107.89 | 298.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.245321 | no |
| Alive | Dead | 0.445531 | no |
| Dead | Fungus | 0.702968 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04104 MELSDTFRMVNLGVGAITVLGGIAQIFGFKLQTIVVGAYMIVFGLAIALLEFQIPPQIARYASFLFSFIGRGAFY IFIGCLLLGGMILQNIAGGVVGIVGLGYVILEFIPSIEPPANMREADVGGWTAEQV* |
| Coding | >Ophcf2|04104 ATGGAGCTGTCGGATACATTTCGCATGGTCAACCTCGGGGTCGGAGCCATTACCGTCCTGGGAGGGATTGCGCAA ATCTTCGGCTTCAAGCTCCAGACCATCGTCGTCGGCGCTTACATGATCGTCTTCGGCCTCGCCATTGCCCTCCTA GAATTCCAGATCCCTCCTCAAATCGCACGATATGCCTCCTTCCTCTTCTCCTTCATCGGTCGCGGCGCCTTCTAC ATCTTCATCGGCTGTCTCCTCCTCGGCGGCATGATCCTACAAAACATCGCCGGTGGCGTCGTCGGCATCGTCGGC CTCGGATACGTCATCCTCGAGTTTATCCCTTCCATCGAGCCCCCTGCGAATATGCGCGAAGCCGATGTCGGTGGC TGGACGGCAGAGCAGGTGTAG |
| Transcript | >Ophcf2|04104 ATGGAGCTGTCGGATACATTTCGCATGGTCAACCTCGGGGTCGGAGCCATTACCGTCCTGGGAGGGATTGCGCAA ATCTTCGGCTTCAAGCTCCAGACCATCGTCGTCGGCGCTTACATGATCGTCTTCGGCCTCGCCATTGCCCTCCTA GAATTCCAGATCCCTCCTCAAATCGCACGATATGCCTCCTTCCTCTTCTCCTTCATCGGTCGCGGCGCCTTCTAC ATCTTCATCGGCTGTCTCCTCCTCGGCGGCATGATCCTACAAAACATCGCCGGTGGCGTCGTCGGCATCGTCGGC CTCGGATACGTCATCCTCGAGTTTATCCCTTCCATCGAGCCCCCTGCGAATATGCGCGAAGCCGATGTCGGTGGC TGGACGGCAGAGCAGGTGTAG |
| Gene | >Ophcf2|04104 ATGGAGCTGTCGGATACATTGTGCGTGTGTCTCGTCTGCAGGGCTTTTCGCGGTGGATGCTGACGCGCGGCATTG CCAGTCGCATGGTCAACCTCGGGGTCGGAGCCATTACCGTCCTGGGAGGGATTGCGCAAATCTTCGGCTTCAAGC TGTGGGTTGCATATGCTTTTCTTGTCGTCTTCTCCTTTTGCGGCTGTGCTGATTATCTTGGTTAGCCAGACCATC GTCGTCGGCGCTTACATGATCGTCTTCGGCCTCGCCATTGCCCTCCTAGGTTCGTCGCCTTACCATCCTCTCCAT CGACTCCTCAACTAACGCCCTCTAGAATTCCAGATCCCTCCTCAAATCGCACGATATGCCTCCTTCCTCTTCTCC TTCATCGGTCGCGGCGCCTGTTCGTCCCTGCATCCCCCCCCCCCCCAAAAAAAAAAACATCCTAGCTAACCCCCC TCGCCAACAGTCTACATCTTCATCGGCTGTCTCCTCCTCGGCGGCATGATCCTACAAAACATCGCCGGTGGCGTC GTCGGCATCGTCGGCCTCGGATACGTCATCCTCGAGTTTATCCCTTCCATCGAGCCCCCTGCGAATATGCGCGAA GCCGATGTCGGTGGCTGGACGGCAGAGCAGGTGTAG |