© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|04068 |
| Gene name | |
| Location | scaffold_04:771752..772628 |
| Strand | + |
| Gene length (bp) | 876 |
| Transcript length (bp) | 690 |
| Coding sequence length (bp) | 690 |
| Protein length (aa) | 230 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08294 | TIM21 | TIM21 | 4.1E-42 | 65 | 208 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030150 | protein import into mitochondrial matrix | Yes |
| GO:0005744 | TIM23 mitochondrial import inner membrane translocase complex | Yes |
| GO:0033036 | macromolecule localization | No |
| GO:0072594 | establishment of protein localization to organelle | No |
| GO:0033365 | protein localization to organelle | No |
| GO:0065002 | intracellular protein transmembrane transport | No |
| GO:0006886 | intracellular protein transport | No |
| GO:0008104 | protein localization | No |
| GO:0071702 | organic substance transport | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0051234 | establishment of localization | No |
| GO:1990542 | mitochondrial transmembrane transport | No |
| GO:0071806 | protein transmembrane transport | No |
| GO:0015031 | protein transport | No |
| GO:0070585 | protein localization to mitochondrion | No |
| GO:0005575 | cellular_component | No |
| GO:0006839 | mitochondrial transport | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0044743 | protein transmembrane import into intracellular organelle | No |
| GO:0072655 | establishment of protein localization to mitochondrion | No |
| GO:0098796 | membrane protein complex | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0055085 | transmembrane transport | No |
| GO:0008150 | biological_process | No |
| GO:0046907 | intracellular transport | No |
| GO:0051179 | localization | No |
| GO:0051641 | cellular localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 98.98 | 54.32 | 143.64 |
| Alive | In ants, during behavior modification | 53.50 | 25.80 | 81.19 |
| Dead | In ants, recently dead | 46.67 | 22.09 | 71.25 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.004221 | yes |
| Alive | Dead | 0.533258 | no |
| Dead | Fungus | 0.000454 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|04068 MRPNLLLRTTRLGACSTSFSGLASRTYSSQTGLGAAAAPKQRRQSITPFNDNGSVPWRELSVTEKMARTTQQGFN GGLVAIGLVLTGTVVYFLWTDVFSPDSKISQFNRAVDRIKKDPRCIQLLGEAHRITAHGEETMNKWRRARPLSYS EKVDARGDSHLMMHFYVDGPLQNGVAQLHMVKRQGESDYEYRYFFVDVKGHERVYLEKATSESGPGKKQLSLFGV KWGR* |
| Coding | >Ophcf2|04068 ATGAGGCCGAATCTCCTATTGCGGACCACTCGTTTGGGCGCATGCTCCACCTCCTTTTCAGGGCTCGCCTCCAGG ACGTATAGCTCACAGACTGGCCTCGGAGCTGCGGCCGCGCCGAAGCAGAGACGACAGAGCATCACGCCGTTCAAC GACAATGGATCGGTGCCGTGGAGAGAGCTCTCGGTGACGGAGAAGATGGCTCGGACGACGCAGCAGGGCTTCAAC GGCGGCTTGGTCGCCATCGGCCTCGTGCTAACGGGGACCGTCGTCTATTTCCTCTGGACAGACGTCTTTTCTCCC GACAGCAAGATATCTCAATTCAACCGCGCCGTCGACAGAATCAAGAAAGACCCCAGGTGCATCCAGCTGCTAGGA GAGGCCCATAGGATCACAGCCCACGGAGAAGAAACGATGAACAAGTGGCGGCGAGCTCGCCCTCTCTCGTACTCT GAAAAAGTGGACGCTCGGGGAGACTCGCATCTGATGATGCACTTTTACGTCGATGGACCTCTGCAGAACGGCGTC GCGCAGCTTCACATGGTCAAGCGACAGGGCGAGAGCGACTATGAGTACAGGTATTTCTTCGTGGACGTCAAGGGG CATGAGCGCGTCTACCTGGAAAAGGCCACGTCCGAGTCGGGCCCGGGGAAGAAGCAGCTGAGTCTCTTCGGCGTC AAATGGGGCCGATGA |
| Transcript | >Ophcf2|04068 ATGAGGCCGAATCTCCTATTGCGGACCACTCGTTTGGGCGCATGCTCCACCTCCTTTTCAGGGCTCGCCTCCAGG ACGTATAGCTCACAGACTGGCCTCGGAGCTGCGGCCGCGCCGAAGCAGAGACGACAGAGCATCACGCCGTTCAAC GACAATGGATCGGTGCCGTGGAGAGAGCTCTCGGTGACGGAGAAGATGGCTCGGACGACGCAGCAGGGCTTCAAC GGCGGCTTGGTCGCCATCGGCCTCGTGCTAACGGGGACCGTCGTCTATTTCCTCTGGACAGACGTCTTTTCTCCC GACAGCAAGATATCTCAATTCAACCGCGCCGTCGACAGAATCAAGAAAGACCCCAGGTGCATCCAGCTGCTAGGA GAGGCCCATAGGATCACAGCCCACGGAGAAGAAACGATGAACAAGTGGCGGCGAGCTCGCCCTCTCTCGTACTCT GAAAAAGTGGACGCTCGGGGAGACTCGCATCTGATGATGCACTTTTACGTCGATGGACCTCTGCAGAACGGCGTC GCGCAGCTTCACATGGTCAAGCGACAGGGCGAGAGCGACTATGAGTACAGGTATTTCTTCGTGGACGTCAAGGGG CATGAGCGCGTCTACCTGGAAAAGGCCACGTCCGAGTCGGGCCCGGGGAAGAAGCAGCTGAGTCTCTTCGGCGTC AAATGGGGCCGATGA |
| Gene | >Ophcf2|04068 ATGAGGCCGAATCTCCTATTGCGGACCACTCGTTTGGGCGCATGCTCCACCTCCTTTTCAGGGCTCGCCTCCAGG ACGTATAGCTCACAGACTGGCCTCGGAGCTGCGGCCGCGCCGAAGCAGAGACGACAGAGCATCACGCCGTTCAAC GACAATGGATCGGTGCCGTGGAGAGAGCTCTCGGTGACGGAGAAGATGGCTCGGACGACGCAGCAGGGCTTCAAC GGCGGCTTGGTCGCCATCGGCCTCGTGCTAACGGTACGGCCTCCCCAGTCTACCCTCGCCGGCCGACCGCTGACA CCAGCCAGGGGACCGTCGTCTATTTCCTCTGGACAGACGTCTTTTCTCCCGACAGCAAGATATCTCAATTCAACC GCGCCGTCGACAGAATCAAGAAAGACCCCAGGTGCATCCAGCTGCTAGGAGAGGCCCATAGGATCACAGCCCACG GAGAAGAAACGATGAACAAGTGGCGGCGAGCTCGCCCTCTCTCGTGAGTCGCCCCTTTTTTATCTTCTGTACATG CATACATCCTTTACTCGGGGAGTCGCTAACATCCATGCAAGGTACTCTGAAAAAGTGGACGCTCGGGGAGACTCG CATCTGATGATGCACTTTTACGTGAGTGCGGCCGCACCGCAGACGGGCACAGACGAGGCGCTGACGAACGACGAC GACGGTCAGGTCGATGGACCTCTGCAGAACGGCGTCGCGCAGCTTCACATGGTCAAGCGACAGGGCGAGAGCGAC TATGAGTACAGGTATTTCTTCGTGGACGTCAAGGGGCATGAGCGCGTCTACCTGGAAAAGGCCACGTCCGAGTCG GGCCCGGGGAAGAAGCAGCTGAGTCTCTTCGGCGTCAAATGGGGCCGATGA |