Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|04024
Gene name
Locationscaffold_04:658938..661292
Strand+
Gene length (bp)2354
Transcript length (bp)1398
Coding sequence length (bp)1398
Protein length (aa) 466

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04153 NOT2_3_5 NOT2 / NOT3 / NOT5 family 1.7E-29 341 452

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0050789 regulation of biological process No
GO:0050794 regulation of cellular process No
GO:0065007 biological regulation No
GO:0080090 regulation of primary metabolic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0060255 regulation of macromolecule metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:2001141 regulation of RNA biosynthetic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0008150 biological_process No
GO:0051252 regulation of RNA metabolic process No
GO:0009889 regulation of biosynthetic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0031323 regulation of cellular metabolic process No
GO:0019222 regulation of metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.6549 0.6927 0.0881 0.0215 0.0511 0.0045 0.1051 0.0392 0.032 0.0603

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 76.60 44.04 109.15
Alive In ants, during behavior modification 73.79 42.27 105.31
Dead In ants, recently dead 66.48 38.03 94.92

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.874899 no
Alive Dead 0.571725 no
Dead Fungus 0.490731 no

Orthologs

Orthofinder run ID4
Orthogroup2479
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6056
Ophiocordyceps australis map64 (Brazil) OphauB2|2744
Ophiocordyceps camponoti-floridani Ophcf2|04024 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|1970
Ophiocordyceps kimflemingae Ophio5|5847
Ophiocordyceps subramaniannii Hirsu2|3579

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|04024
MNRPVPQTLRGMPGNFGGQPQPQQQGRPVSNRLPNGKMANNASSWGFGGGLPMGASGFPNQAHQLGGNLSFAQSL
TGSQPATPLDLSEFPSLANNSQLNTTGQPSLWSASGSRNPNGPVQRSQSIPVTTQPSGQDDLFNPSSSRVPPNQA
ANGYLRSERTANMMSSLGFAPQSSSSAHVQANKGNGLLNALSANSRANEARSPPGGGASASSRAPDAKRPDDMRQ
KAPMFRDDGFGKTPAGDGAMQATGARSQLGAIGNEGSQGKLKDDKASQHPEAVDPLAGMAAVDKWGIKGLRTLMN
NYPDFHAMVVGMDPSTLGLDLSTQELISPQIYSLFDEQPPRPTVTSSKFRLPDCYSVTNVQPIESKIQSFNEETL
FWLFYSCPADMKQQMAAVELHSRNWRWHKKLQIWLTKDEHMNPQILSPNHERGYYIVWDANNWRKDRREFTLHYG
DLDTTLNAAPTLNMS*
Coding >Ophcf2|04024
ATGAATCGGCCAGTGCCGCAAACGCTACGGGGCATGCCTGGCAACTTCGGAGGCCAACCACAACCTCAGCAACAA
GGACGACCGGTATCGAATCGGCTGCCAAACGGGAAGATGGCCAATAATGCCTCGAGCTGGGGTTTTGGCGGCGGC
CTTCCCATGGGAGCTTCAGGTTTTCCCAACCAAGCGCATCAGCTGGGCGGAAACCTTAGCTTCGCTCAGAGCTTG
ACGGGGTCACAACCTGCTACGCCGTTGGATCTATCAGAATTTCCCTCTTTAGCGAATAACTCGCAACTGAACACT
ACCGGGCAGCCCTCACTGTGGTCGGCTTCCGGCTCGCGAAACCCCAACGGCCCCGTTCAGCGCAGCCAGTCCATC
CCGGTCACCACCCAGCCTTCAGGACAAGACGACCTGTTCAACCCTTCATCTTCTCGGGTGCCGCCCAATCAAGCT
GCCAACGGTTATCTTCGATCGGAACGGACCGCCAACATGATGTCCTCGCTAGGTTTCGCGCCTCAAAGCTCCAGC
TCGGCACATGTGCAGGCGAACAAAGGCAACGGGCTGCTGAATGCCTTGTCTGCAAACAGCCGGGCCAATGAGGCG
CGGTCGCCGCCTGGAGGAGGTGCATCAGCTTCATCACGAGCACCGGATGCGAAGCGACCCGATGATATGAGGCAG
AAGGCGCCCATGTTCCGCGATGATGGCTTCGGCAAGACACCTGCAGGCGACGGGGCGATGCAGGCGACTGGCGCA
AGGAGCCAGCTTGGCGCCATCGGAAACGAGGGTTCGCAGGGAAAGTTGAAGGACGACAAGGCGAGCCAACATCCG
GAAGCTGTCGACCCTCTGGCAGGTATGGCGGCCGTTGACAAGTGGGGCATCAAGGGTCTGCGAACTCTGATGAAC
AACTATCCCGACTTTCATGCCATGGTGGTGGGCATGGATCCGAGCACGTTGGGGCTGGACTTGAGCACTCAAGAG
CTCATTTCTCCGCAAATCTACTCCCTGTTCGACGAGCAACCGCCGAGACCGACGGTAACGTCGAGCAAATTCCGG
CTTCCCGATTGCTATAGCGTCACCAACGTGCAGCCCATCGAGAGCAAGATCCAGAGCTTCAACGAGGAGACGTTA
TTTTGGCTCTTCTACAGCTGTCCGGCAGACATGAAGCAGCAAATGGCGGCAGTGGAGCTGCATTCTCGAAACTGG
CGGTGGCACAAGAAGCTGCAGATCTGGCTCACCAAGGATGAGCACATGAACCCGCAAATTCTGAGCCCCAACCAC
GAGCGAGGCTACTACATCGTATGGGACGCAAATAACTGGCGGAAAGATCGAAGAGAGTTTACGCTGCACTACGGG
GATCTGGACACGACGCTGAACGCGGCACCGACATTAAATATGTCGTAG
Transcript >Ophcf2|04024
ATGAATCGGCCAGTGCCGCAAACGCTACGGGGCATGCCTGGCAACTTCGGAGGCCAACCACAACCTCAGCAACAA
GGACGACCGGTATCGAATCGGCTGCCAAACGGGAAGATGGCCAATAATGCCTCGAGCTGGGGTTTTGGCGGCGGC
CTTCCCATGGGAGCTTCAGGTTTTCCCAACCAAGCGCATCAGCTGGGCGGAAACCTTAGCTTCGCTCAGAGCTTG
ACGGGGTCACAACCTGCTACGCCGTTGGATCTATCAGAATTTCCCTCTTTAGCGAATAACTCGCAACTGAACACT
ACCGGGCAGCCCTCACTGTGGTCGGCTTCCGGCTCGCGAAACCCCAACGGCCCCGTTCAGCGCAGCCAGTCCATC
CCGGTCACCACCCAGCCTTCAGGACAAGACGACCTGTTCAACCCTTCATCTTCTCGGGTGCCGCCCAATCAAGCT
GCCAACGGTTATCTTCGATCGGAACGGACCGCCAACATGATGTCCTCGCTAGGTTTCGCGCCTCAAAGCTCCAGC
TCGGCACATGTGCAGGCGAACAAAGGCAACGGGCTGCTGAATGCCTTGTCTGCAAACAGCCGGGCCAATGAGGCG
CGGTCGCCGCCTGGAGGAGGTGCATCAGCTTCATCACGAGCACCGGATGCGAAGCGACCCGATGATATGAGGCAG
AAGGCGCCCATGTTCCGCGATGATGGCTTCGGCAAGACACCTGCAGGCGACGGGGCGATGCAGGCGACTGGCGCA
AGGAGCCAGCTTGGCGCCATCGGAAACGAGGGTTCGCAGGGAAAGTTGAAGGACGACAAGGCGAGCCAACATCCG
GAAGCTGTCGACCCTCTGGCAGGTATGGCGGCCGTTGACAAGTGGGGCATCAAGGGTCTGCGAACTCTGATGAAC
AACTATCCCGACTTTCATGCCATGGTGGTGGGCATGGATCCGAGCACGTTGGGGCTGGACTTGAGCACTCAAGAG
CTCATTTCTCCGCAAATCTACTCCCTGTTCGACGAGCAACCGCCGAGACCGACGGTAACGTCGAGCAAATTCCGG
CTTCCCGATTGCTATAGCGTCACCAACGTGCAGCCCATCGAGAGCAAGATCCAGAGCTTCAACGAGGAGACGTTA
TTTTGGCTCTTCTACAGCTGTCCGGCAGACATGAAGCAGCAAATGGCGGCAGTGGAGCTGCATTCTCGAAACTGG
CGGTGGCACAAGAAGCTGCAGATCTGGCTCACCAAGGATGAGCACATGAACCCGCAAATTCTGAGCCCCAACCAC
GAGCGAGGCTACTACATCGTATGGGACGCAAATAACTGGCGGAAAGATCGAAGAGAGTTTACGCTGCACTACGGG
GATCTGGACACGACGCTGAACGCGGCACCGACATTAAATATGTCGTAG
Gene >Ophcf2|04024
ATGAATCGGCCAGGTAGGACAAGTCCAGAATAACCCCCCCTCCCTCCCCCTTGATTCCCTTTGCCAGACTCAGCC
TCGAGCACCCCGCGCCCACGACGATGATTCGATCGAGCCGACGACCGTCCTGACCATCGGCGAGCTGCATGGCTG
TTTCCGTACCTCGCAGACGCAGGCAAGAAGCTGTGCAATTCTCGATTGGCGACAGGCTTGACGCGAGCTCCACGA
CCTCGAGATGTCGAAATTCCGAACGACGGGTGAAACTGGTCCAGCATGGCTCTGTTTCAGGCAGCTTCTGGCTAC
AAAGTTGGCTATCTGTACCATGATGGCCCGCGTCGATTCTTATTCGGTTTCTGACGAGATCTCTTGAATAGTGCC
GCAAACGCTACGGGGCATGCCTGGCAACTTCGGAGGCCAACCACAACCTCAGCAACAAGGACGACCGGTATCGAA
TCGGCTGCCAAACGGGAAGATGGGTTCGCATTTCCCGACTCATCTTGGAGGTACGCTGCTTGTGGCTGACGAGAG
ACGTTTGCCAGCCAATAATGCCTCGAGCTGGGGTTTTGGCGGCGGCCTTCCCATGGGAGCTTCAGGTTTTCCCAA
CCAAGCGCATCAGCTGGGCGGAAACCTTAGCTTCGCTCAGAGCTTGACGGGGTCACAACCTGCTACGCCGTTGGA
TCTATCGTACGTATCTAAGCCTTCTCTCCCCTTATCTATCAGCCTGCCTATCTGCTTTTTGTCGATTTCTCTCTG
CCCGCTTGTATGAATCATGCTGTGGCAGCAAGTCTTGGCAGTAATGCCAGGTGCTAGCGAAGTTGATCGCTACTC
CCACCTCTTCCCGGGCACACGGTTTCTGCTTCCTCATCCAAGTTCCACCTACCTCGCGAACCTTCTTTGGCCGCA
TCACAACTTTGACAAGCAAGCGTACTAACTATCTCTAGAGAATTTCCCTCTTTAGCGAATAACTCGCAACTGAAC
ACTACCGGGCAGCCCTCACTGTGGTCGGCTTCCGGCTCGCGAAACCCCAACGGCCCCGTTCAGCGCAGCCAGTCC
ATCCCGGTCACCACCCAGCCTTCAGGACAAGACGACCTGTTCAACCCTTCATCTTCTCGGGTGCCGCCCAATCAA
GGTTCGTTACAAAGCTTCTCCGTCCTCTCTCGGGTTCTGTCGGGCAGCGTTGACGTTCCAACCGCAGCTGCCAAC
GGTTATCTTCGATCGGAACGGACCGCCAACATGATGTCCTCGCTAGGTTTCGCGCCTCAAAGCTCCAGCTCGGCA
CATGTGCAGGCGAACAAAGGCAACGGGCTGCTGAATGCCTTGTCTGCAAACAGCCGGGCCAATGAGGCGCGGTCG
CCGCCTGGAGGAGGTGCATCAGGTAGGTCTACCCCTCTTTGATGGTGTGTCTCACCGTGTGTTGACCTCGGCCAG
CTTCATCACGAGCACCGGATGCGAAGCGACCCGATGATATGAGGCAGAAGGCGCCCATGTTCCGCGATGATGGCT
TCGGCAAGACACCTGCAGGCGACGGGGCGATGCAGGCGACTGGCGCAAGGAGCCAGCTTGGCGCCATCGGAAACG
AGGGTTCGCAGGGAAAGTTGAAGGACGACAAGGCGAGCCAACATCCGGAAGCTGTCGACCCTCTGGCAGGTATGG
CGGCCGTTGACAAGTGGGGCATCAAGGGTCTGCGAACTCTGATGAACAACTATCCCGACTTTCATGCCATGGTGG
TGGGCATGGATCCGAGCACGTTGGGGCTGGACTTGAGCACTCAAGAGTAAGTGTCTCTGAGGCGCATATGGCGCG
TTTATTGACACTGGCTAACGACGCAAAAGGCTCATTTCTCCGCAAATCTACTCCCTGTTCGACGAGCAACCGCCG
AGACCGACGGTAACGTCGAGCAAATTCCGGCTTCCCGATTGCTATAGCGTCACCAACGTGCAGCCCATCGAGAGC
AAGATCCAGAGCTTCAACGAGGAGACGTTATTTTGGCTCTTCTACAGCTGTCCGGCAGACATGAAGCAGCAAATG
GCGGCAGTGGAGCTGTAAGAAAACCCCGCTACCGTTGAAGCCGGCTCTAACGATTCGACAGGCATTCTCGAAACT
GGCGGTGGCACAAGAAGCTGCAGATCTGGCTCACCAAGGATGAGCACATGAACCCGCAAATTCTGAGCCCCAACC
ACGAGCGAGGCTACTACATCGTATGGGACGCAAATAACTGGCGGAAAGATCGAGTAAGTGACGTGTGCCCCGTTG
TGGCCGGACAAGTGCTGACCCGAGGACCTCAGAGAGAGTTTACGCTGCACTACGGGGATCTGGACACGACGCTGA
ACGCGGCACCGACATTAAATATGTCGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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