Protein ID | Ophcf2|03983 |
Gene name | |
Location | scaffold_04:547409..549556 |
Strand | + |
Gene length (bp) | 2147 |
Transcript length (bp) | 1965 |
Coding sequence length (bp) | 1965 |
Protein length (aa) | 655 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00400 | WD40 | WD domain, G-beta repeat | 8.9E-03 | 303 | 340 |
PF00400 | WD40 | WD domain, G-beta repeat | 2.9E-04 | 344 | 380 |
PF00400 | WD40 | WD domain, G-beta repeat | 9.0E-04 | 425 | 458 |
PF00400 | WD40 | WD domain, G-beta repeat | 8.3E-06 | 535 | 569 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 65 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03983 MADGGFPNDAGPDEDLSIISTRGLEAFGRKVTSTASSLIVPNTDSAAMHYQTALAQVHRKLRRPSVQRSVFSMAR TTPTDMVRARLSPTEIQHRALTRLPDELLANIPEHNNAYSLFQGFQASFPELTDDGKKHRRRVSRGRKLLDDSPS EGAKGLKRLKKDRAALMHEFELLAIRKNMASSEIRDIDNKLANLHGMRRIILDRLAGLEQDEALMEHDIVEVDGR LEEAQALVDEAESIAKEAPSKDESDLVADVDDDDVEFMSQSVYEKLPGSTNSTPSRRQKRVHRRISMPILHEHMD VGSNLVEIRAHRDNITALDFDAPFGTLVTAALDDTVKVWDLTAGRCMGFLEGHTASVRALQVQDNILATGGADAT IRLWDLSRSQYDAQGDKLGRDGEDEEAIAFENSEDQPVDPPEGSMDDCGLFTLEAHVDEVTALNFRGDVLVSGSA DKTLRHWDLAKGRCVQTLDVMWAAAQASATHAGEGPWRPTGRPLVGGSGSGNSDFVGALQVFETALACGTADGMV RLWDLRSGQVHRSLVGHTGPVTSLQFDNVHLVTGSLDRSVRIWDLRTGSIYDAYAYDNAITSMMFDARRITCAAG EDVVKVYDKVEGRQWDCGAGAEEERTAAVVERVCVRDGYLVEGRRDGVVGAWTC* |
Coding | >Ophcf2|03983 ATGGCCGACGGCGGGTTTCCGAACGACGCCGGTCCGGACGAAGACCTGTCCATCATATCTACGCGAGGACTCGAG GCCTTTGGTCGCAAGGTTACGTCGACGGCCTCGAGCCTCATCGTTCCCAATACCGATTCCGCTGCCATGCACTAT CAGACAGCCTTGGCTCAGGTCCATCGCAAGCTTCGACGGCCGTCGGTCCAACGCAGTGTCTTCTCCATGGCACGA ACCACGCCGACCGACATGGTCCGCGCGCGCCTTTCGCCGACGGAGATTCAGCACCGCGCCCTGACCCGGCTGCCG GACGAGCTGCTGGCCAACATCCCCGAACACAACAACGCCTACTCGCTCTTCCAGGGCTTCCAGGCCAGCTTTCCC GAGTTGACGGACGATGGCAAGAAACATCGACGTCGGGTCTCGAGGGGCAGGAAGCTTCTCGATGACAGCCCATCC GAGGGAGCAAAGGGCCTGAAGCGTCTAAAGAAGGACAGGGCGGCTTTGATGCACGAGTTTGAGCTGCTCGCCATC CGCAAGAACATGGCCAGCAGCGAGATTCGCGACATCGACAACAAGCTGGCCAACCTACACGGCATGCGACGCATC ATCCTCGACCGGCTGGCCGGCCTGGAACAGGATGAGGCGCTGATGGAGCACGACATTGTCGAAGTGGACGGGAGG CTAGAGGAGGCGCAAGCGCTGGTCGACGAGGCCGAGAGCATCGCGAAGGAGGCGCCGTCGAAAGACGAGTCGGAC CTCGTCGCAGATGTCGATGACGACGACGTCGAGTTCATGTCGCAGTCTGTCTACGAGAAGCTGCCAGGGTCGACC AACAGTACGCCATCGCGCCGGCAGAAGCGGGTACATCGTCGGATATCGATGCCCATATTACACGAGCACATGGAC GTCGGGTCCAACCTCGTGGAGATTCGAGCGCACCGCGACAACATCACGGCTCTCGACTTTGACGCGCCCTTCGGC ACTCTGGTGACGGCGGCGCTCGACGACACGGTCAAGGTCTGGGACCTGACGGCTGGGCGGTGCATGGGCTTCCTC GAGGGCCACACGGCCTCGGTGCGCGCCCTCCAGGTCCAAGACAACATCCTGGCCACGGGCGGTGCCGACGCCACC ATCCGGCTGTGGGACCTGAGCAGATCACAGTACGACGCACAGGGCGACAAGCTGGGTCGTGATGGCGAGGACGAA GAGGCCATCGCCTTCGAGAATTCGGAAGATCAGCCGGTTGATCCGCCCGAGGGCAGCATGGACGACTGTGGGCTG TTCACGCTCGAGGCCCACGTGGACGAAGTGACGGCGCTCAACTTCAGGGGGGACGTGCTGGTATCGGGCTCGGCG GACAAGACGCTGCGGCACTGGGACCTCGCCAAGGGCCGATGCGTGCAGACGCTCGACGTCATGTGGGCGGCGGCT CAGGCATCGGCGACTCACGCCGGCGAAGGGCCCTGGAGACCGACAGGACGACCCCTCGTGGGCGGCAGCGGCAGC GGCAACTCGGACTTTGTGGGCGCGCTTCAGGTGTTCGAGACAGCGCTGGCGTGCGGCACGGCGGACGGCATGGTC CGGCTCTGGGACCTCCGGAGCGGACAGGTGCACAGGAGCCTGGTGGGCCACACGGGGCCCGTGACGAGTCTGCAG TTCGACAACGTCCACCTGGTGACGGGGAGCTTGGACAGGAGCGTGAGAATATGGGATCTTCGGACAGGATCCATC TATGACGCTTACGCCTACGACAATGCCATCACGAGTATGATGTTCGACGCAAGAAGGATCACGTGTGCGGCTGGC GAGGACGTGGTCAAGGTGTACGACAAGGTCGAGGGCCGCCAATGGGACTGCGGTGCCGGAGCCGAGGAGGAGAGG ACGGCGGCGGTGGTGGAGCGGGTTTGTGTAAGAGACGGGTACCTGGTCGAGGGTCGACGGGATGGTGTCGTGGGA GCCTGGACGTGCTGA |
Transcript | >Ophcf2|03983 ATGGCCGACGGCGGGTTTCCGAACGACGCCGGTCCGGACGAAGACCTGTCCATCATATCTACGCGAGGACTCGAG GCCTTTGGTCGCAAGGTTACGTCGACGGCCTCGAGCCTCATCGTTCCCAATACCGATTCCGCTGCCATGCACTAT CAGACAGCCTTGGCTCAGGTCCATCGCAAGCTTCGACGGCCGTCGGTCCAACGCAGTGTCTTCTCCATGGCACGA ACCACGCCGACCGACATGGTCCGCGCGCGCCTTTCGCCGACGGAGATTCAGCACCGCGCCCTGACCCGGCTGCCG GACGAGCTGCTGGCCAACATCCCCGAACACAACAACGCCTACTCGCTCTTCCAGGGCTTCCAGGCCAGCTTTCCC GAGTTGACGGACGATGGCAAGAAACATCGACGTCGGGTCTCGAGGGGCAGGAAGCTTCTCGATGACAGCCCATCC GAGGGAGCAAAGGGCCTGAAGCGTCTAAAGAAGGACAGGGCGGCTTTGATGCACGAGTTTGAGCTGCTCGCCATC CGCAAGAACATGGCCAGCAGCGAGATTCGCGACATCGACAACAAGCTGGCCAACCTACACGGCATGCGACGCATC ATCCTCGACCGGCTGGCCGGCCTGGAACAGGATGAGGCGCTGATGGAGCACGACATTGTCGAAGTGGACGGGAGG CTAGAGGAGGCGCAAGCGCTGGTCGACGAGGCCGAGAGCATCGCGAAGGAGGCGCCGTCGAAAGACGAGTCGGAC CTCGTCGCAGATGTCGATGACGACGACGTCGAGTTCATGTCGCAGTCTGTCTACGAGAAGCTGCCAGGGTCGACC AACAGTACGCCATCGCGCCGGCAGAAGCGGGTACATCGTCGGATATCGATGCCCATATTACACGAGCACATGGAC GTCGGGTCCAACCTCGTGGAGATTCGAGCGCACCGCGACAACATCACGGCTCTCGACTTTGACGCGCCCTTCGGC ACTCTGGTGACGGCGGCGCTCGACGACACGGTCAAGGTCTGGGACCTGACGGCTGGGCGGTGCATGGGCTTCCTC GAGGGCCACACGGCCTCGGTGCGCGCCCTCCAGGTCCAAGACAACATCCTGGCCACGGGCGGTGCCGACGCCACC ATCCGGCTGTGGGACCTGAGCAGATCACAGTACGACGCACAGGGCGACAAGCTGGGTCGTGATGGCGAGGACGAA GAGGCCATCGCCTTCGAGAATTCGGAAGATCAGCCGGTTGATCCGCCCGAGGGCAGCATGGACGACTGTGGGCTG TTCACGCTCGAGGCCCACGTGGACGAAGTGACGGCGCTCAACTTCAGGGGGGACGTGCTGGTATCGGGCTCGGCG GACAAGACGCTGCGGCACTGGGACCTCGCCAAGGGCCGATGCGTGCAGACGCTCGACGTCATGTGGGCGGCGGCT CAGGCATCGGCGACTCACGCCGGCGAAGGGCCCTGGAGACCGACAGGACGACCCCTCGTGGGCGGCAGCGGCAGC GGCAACTCGGACTTTGTGGGCGCGCTTCAGGTGTTCGAGACAGCGCTGGCGTGCGGCACGGCGGACGGCATGGTC CGGCTCTGGGACCTCCGGAGCGGACAGGTGCACAGGAGCCTGGTGGGCCACACGGGGCCCGTGACGAGTCTGCAG TTCGACAACGTCCACCTGGTGACGGGGAGCTTGGACAGGAGCGTGAGAATATGGGATCTTCGGACAGGATCCATC TATGACGCTTACGCCTACGACAATGCCATCACGAGTATGATGTTCGACGCAAGAAGGATCACGTGTGCGGCTGGC GAGGACGTGGTCAAGGTGTACGACAAGGTCGAGGGCCGCCAATGGGACTGCGGTGCCGGAGCCGAGGAGGAGAGG ACGGCGGCGGTGGTGGAGCGGGTTTGTGTAAGAGACGGGTACCTGGTCGAGGGTCGACGGGATGGTGTCGTGGGA GCCTGGACGTGCTGA |
Gene | >Ophcf2|03983 ATGGCCGACGGCGGGTTTCCGAACGACGCCGGTCCGGACGAAGACCTGTCCATCATATCTGTACGTCTGCCCGTC GCATCCAAAACAACAACGGTGCTGACGGGAAATGGCAGACGCGAGGACTCGAGGCCTTTGGTCGCAAGGTTACGT CGACGGCCTCGAGCCTCATCGTTCCCAATACCGATTCCGCTGCCATGCACTATCAGACAGCCTTGGCTCAGGTCC ATCGCAAGCTTCGACGGCCGTCGGTCCAACGCAGTGTCTTCTCCATGGCACGAACCACGCCGACCGACATGGTCC GCGCGCGCCTTTCGCCGACGGAGATTCAGCACCGCGCCCTGACCCGGCTGCCGGACGAGCTGCTGGCCAACATCC CCGAACACAACAACGCCTACTCGCTCTTCCAGGGCTTCCAGGCCAGCTTTCCCGAGTTGACGGACGATGGCAAGA AACATCGACGTCGGGTCTCGAGGGGCAGGAAGCTTCTCGATGACAGCCCATCCGAGGGAGCAAAGGGCCTGAAGC GTCTAAAGAAGGACAGGGCGGCTTTGATGCACGAGTTTGAGCTGCTCGCCATCCGCAAGAACATGGCCAGCAGCG AGATTCGCGACATCGACAACAAGCTGGCCAACCTACACGGCATGCGACGCATCATCCTCGACCGGCTGGCCGGCC TGGAACAGGATGAGGCGCTGATGGAGCACGACAGTAGGTGTCACATCCCAGAAATACACTCCCGAAGCCCGACTA CATTTGCTCACGTCACACCAGTTGTCGAAGTGGACGGGAGGCTAGAGGAGGCGCAAGCGCTGGTCGACGAGGCCG AGAGCATCGCGAAGGAGGCGCCGTCGAAAGACGAGTCGGACCTCGTCGCAGATGTCGATGACGACGACGTCGAGT TCATGTCGCAGTCTGTCTACGAGAAGCTGCCAGGGTCGACCAACAGTACGCCATCGCGCCGGCAGAAGCGGGTAC ATCGTCGGATATCGATGCCCATATTACACGAGCACATGGACGTCGGGTCCAACCTCGTGGAGATTCGAGCGCACC GCGACAACATCACGGCTCTCGACTTTGACGCGCCCTTCGGCACTCTGGTGACGGCGGCGCTCGACGACACGGTCA AGGTCTGGGACCTGACGGCTGGGCGGTGCATGGGCTTCCTCGAGGGCCACACGGCCTCGGTGCGCGCCCTCCAGG TCCAAGACAACATCCTGGCCACGGGCGGTGCCGACGCCACCATCCGGCTGTGGGACCTGAGCAGATCACAGTACG ACGCACAGGGCGACAAGCTGGGTCGTGATGGCGAGGACGAAGAGGCCATCGCCTTCGAGAATTCGGAAGATCAGC CGGTTGATCCGCCCGAGGGCAGCATGGACGACTGTGGGCTGTTCACGCTCGAGGCCCACGTGGACGAAGTGACGG CGCTCAACTTCAGGGGGGACGTGCTGGTATCGGGCTCGGCGGACAAGACGCTGCGGCACTGGGACCTCGCCAAGG GCCGATGCGTGCAGACGCTCGACGTCATGTGGGCGGCGGCTCAGGCATCGGCGACTCACGCCGGCGAAGGGCCCT GGAGACCGACAGGACGACCCCTCGTGGGCGGCAGCGGCAGCGGCAACTCGGACTTTGTGGGCGCGCTTCAGGTGT TCGAGACAGCGCTGGCGTGCGGCACGGCGGACGGCATGGTCCGGCTCTGGGACCTCCGGAGCGGACAGGTGCACA GGAGCCTGGTGGGCCACACGGGGCCCGTGACGAGTCTGCAGTTCGACAACGTCCACCTGGTGACGGGGAGCTTGG ACAGGAGCGTGAGAGTGAGTGTGACGATGACGATGACGACGGCATTAACCCATGAACAAAGCGGCTGACTGGTTT TCCAGATATGGGATCTTCGGACAGGATCCATCTATGACGCTTACGCCTACGACAATGCCATCACGAGTATGATGT TCGACGCAAGAAGGATCACGTGTGCGGCTGGCGAGGACGTGGTCAAGGTGTACGACAAGGTCGAGGGCCGCCAAT GGGACTGCGGTGCCGGAGCCGAGGAGGAGAGGACGGCGGCGGTGGTGGAGCGGGTTTGTGTAAGAGACGGGTACC TGGTCGAGGGTCGACGGGATGGTGTCGTGGGAGCCTGGACGTGCTGA |