© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03982 |
| Gene name | |
| Location | scaffold_04:545689..546658 |
| Strand | - |
| Gene length (bp) | 969 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.6313 | 0.6413 | 0.119 | 0.0488 | 0.1538 | 0.014 | 0.1084 | 0.125 | 0.0985 | 0.1712 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 15 | (None) |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 94.76 | 52.52 | 137.00 |
| Alive | In ants, during behavior modification | 49.17 | 24.52 | 73.82 |
| Dead | In ants, recently dead | 61.33 | 31.82 | 90.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.001945 | yes |
| Alive | Dead | 0.256722 | no |
| Dead | Fungus | 0.030965 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 4100 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03982 MDSAVDMADAGHDLLDLSQIRIQLIRLEDTITFHLIERVRFALNKTIYVPGAISIPNSDLSFFDWYLREQEKLQS LIRRFDSPDEYPFFPEAVRTPILRPLDYPKILHPNSININAKIKSFYIEKFLPAVCPDFGREDRGESQENYGSTA TCDIACLQALSRRIHFGKFVAESKFRSEREVYTRMIKAADREGIDRSITNDAVEMTILERLRLKALTYGKDPAGH QSPVKIDVDAVVAMYKDFVIPLTKEVEVEYLMQRLEPER* |
| Coding | >Ophcf2|03982 ATGGACTCGGCCGTCGACATGGCCGACGCCGGCCACGATCTGCTGGATCTGTCGCAGATTCGCATCCAGTTAATA CGCTTAGAAGATACCATTACCTTTCATCTCATCGAGAGGGTCCGATTCGCCCTCAACAAGACCATTTACGTCCCT GGGGCTATTAGCATTCCCAACAGCGACCTCAGCTTCTTCGACTGGTACCTGCGCGAGCAAGAAAAGCTGCAGTCG CTGATCCGACGCTTCGACTCACCAGACGAGTATCCTTTCTTCCCAGAAGCCGTGCGGACGCCCATCCTCAGGCCC CTCGACTACCCCAAGATCCTGCATCCCAACAGCATCAACATCAACGCCAAGATTAAGTCGTTCTACATTGAAAAA TTCTTGCCCGCCGTCTGTCCAGACTTTGGACGCGAGGACCGGGGAGAATCGCAGGAAAACTACGGCTCGACGGCG ACTTGCGACATCGCCTGCCTCCAGGCCCTGTCGCGCCGCATACACTTTGGCAAATTCGTGGCCGAGTCCAAGTTT CGATCCGAGCGCGAAGTCTACACTCGCATGATCAAGGCTGCCGACCGCGAGGGCATCGATCGCTCCATTACCAAT GACGCGGTCGAGATGACGATTCTCGAGCGCCTCCGTCTCAAGGCCCTGACCTACGGCAAGGACCCGGCCGGGCAC CAAAGCCCCGTCAAGATCGACGTCGACGCCGTCGTGGCCATGTACAAGGACTTTGTCATTCCCTTAACCAAAGAG GTCGAAGTCGAGTACTTGATGCAGAGGCTGGAACCGGAACGGTGA |
| Transcript | >Ophcf2|03982 ATGGACTCGGCCGTCGACATGGCCGACGCCGGCCACGATCTGCTGGATCTGTCGCAGATTCGCATCCAGTTAATA CGCTTAGAAGATACCATTACCTTTCATCTCATCGAGAGGGTCCGATTCGCCCTCAACAAGACCATTTACGTCCCT GGGGCTATTAGCATTCCCAACAGCGACCTCAGCTTCTTCGACTGGTACCTGCGCGAGCAAGAAAAGCTGCAGTCG CTGATCCGACGCTTCGACTCACCAGACGAGTATCCTTTCTTCCCAGAAGCCGTGCGGACGCCCATCCTCAGGCCC CTCGACTACCCCAAGATCCTGCATCCCAACAGCATCAACATCAACGCCAAGATTAAGTCGTTCTACATTGAAAAA TTCTTGCCCGCCGTCTGTCCAGACTTTGGACGCGAGGACCGGGGAGAATCGCAGGAAAACTACGGCTCGACGGCG ACTTGCGACATCGCCTGCCTCCAGGCCCTGTCGCGCCGCATACACTTTGGCAAATTCGTGGCCGAGTCCAAGTTT CGATCCGAGCGCGAAGTCTACACTCGCATGATCAAGGCTGCCGACCGCGAGGGCATCGATCGCTCCATTACCAAT GACGCGGTCGAGATGACGATTCTCGAGCGCCTCCGTCTCAAGGCCCTGACCTACGGCAAGGACCCGGCCGGGCAC CAAAGCCCCGTCAAGATCGACGTCGACGCCGTCGTGGCCATGTACAAGGACTTTGTCATTCCCTTAACCAAAGAG GTCGAAGTCGAGTACTTGATGCAGAGGCTGGAACCGGAACGGTGA |
| Gene | >Ophcf2|03982 ATGGACTCGGCCGTCGACATGGCCGACGCCGGCCACGATCTGCTGGATCTGTCGCAGATTCGCATCCAGTTAATG TAAAATCAAACAGCTCCATCCTCAACAAAGGGGGGATCGACCCGAGGCACACGAGCGTCCGTCGCGATATCAGCA TGGCCAGGGACAGCCCCCGGCGTGGCAGCTTGCTGATGGTCTGCGCAGACGCTTAGAAGATACCATTACCTTTCA TCTCATCGAGAGGGTCCGATTCGCCCTCAACAAGGTACCGTCCACGCCTCTTGCCTCTCAGCCATCTCGCGCTCA TCATGACAGACCATTTACGTCCCTGGGGCTATTAGCATTCCCAACAGCGACCTCAGCTTCTTCGACTGGTACCTG CGCGAGCAAGAAAAGCTGCAGTCGCTGATCCGACGCTTCGACTCACCAGACGAGTATCCTTTCTTCCCAGAAGCC GTGCGGACGCCCATCCTCAGGCCCCTCGACTACCCCAAGATCCTGCATCCCAACAGCATCAACATCAACGCCAAG ATTAAGTCGTTCTACATTGAAAAATTCTTGCCCGCCGTCTGTCCAGACTTTGGACGCGAGGACCGGGGAGAATCG CAGGAAAACTACGGCTCGACGGCGACTTGCGACATCGCCTGCCTCCAGGCCCTGTCGCGCCGCATACACTTTGGC AAATTCGTGGCCGAGTCCAAGTTTCGATCCGAGCGCGAAGTCTACACTCGCATGATCAAGGCTGCCGACCGCGAG GGCATCGATCGCTCCATTACCAATGACGCGGTCGAGATGACGATTCTCGAGCGCCTCCGTCTCAAGGCCCTGACC TACGGCAAGGACCCGGCCGGGCACCAAAGCCCCGTCAAGATCGACGTCGACGCCGTCGTGGCCATGTACAAGGAC TTTGTCATTCCCTTAACCAAAGAGGTCGAAGTCGAGTACTTGATGCAGAGGCTGGAACCGGAACGGTGA |