Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03982
Gene name
Locationscaffold_04:545689..546658
Strand-
Gene length (bp)969
Transcript length (bp)795
Coding sequence length (bp)795
Protein length (aa) 265

Overview

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PFAM Domains

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.6313 0.6413 0.119 0.0488 0.1538 0.014 0.1084 0.125 0.0985 0.1712

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

Gene cluster ID Type of secondary metabolism gene
Cluster 15 (None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 94.76 52.52 137.00
Alive In ants, during behavior modification 49.17 24.52 73.82
Dead In ants, recently dead 61.33 31.82 90.84

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.001945 yes
Alive Dead 0.256722 no
Dead Fungus 0.030965 yes

Orthologs

Orthofinder run ID4
Orthogroup4100
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3799
Ophiocordyceps australis map64 (Brazil) OphauB2|1004
Ophiocordyceps camponoti-floridani Ophcf2|03982 (this protein)
Ophiocordyceps camponoti-rufipedis Ophun1|1882
Ophiocordyceps kimflemingae Ophio5|1352
Ophiocordyceps subramaniannii Hirsu2|8298

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03982
MDSAVDMADAGHDLLDLSQIRIQLIRLEDTITFHLIERVRFALNKTIYVPGAISIPNSDLSFFDWYLREQEKLQS
LIRRFDSPDEYPFFPEAVRTPILRPLDYPKILHPNSININAKIKSFYIEKFLPAVCPDFGREDRGESQENYGSTA
TCDIACLQALSRRIHFGKFVAESKFRSEREVYTRMIKAADREGIDRSITNDAVEMTILERLRLKALTYGKDPAGH
QSPVKIDVDAVVAMYKDFVIPLTKEVEVEYLMQRLEPER*
Coding >Ophcf2|03982
ATGGACTCGGCCGTCGACATGGCCGACGCCGGCCACGATCTGCTGGATCTGTCGCAGATTCGCATCCAGTTAATA
CGCTTAGAAGATACCATTACCTTTCATCTCATCGAGAGGGTCCGATTCGCCCTCAACAAGACCATTTACGTCCCT
GGGGCTATTAGCATTCCCAACAGCGACCTCAGCTTCTTCGACTGGTACCTGCGCGAGCAAGAAAAGCTGCAGTCG
CTGATCCGACGCTTCGACTCACCAGACGAGTATCCTTTCTTCCCAGAAGCCGTGCGGACGCCCATCCTCAGGCCC
CTCGACTACCCCAAGATCCTGCATCCCAACAGCATCAACATCAACGCCAAGATTAAGTCGTTCTACATTGAAAAA
TTCTTGCCCGCCGTCTGTCCAGACTTTGGACGCGAGGACCGGGGAGAATCGCAGGAAAACTACGGCTCGACGGCG
ACTTGCGACATCGCCTGCCTCCAGGCCCTGTCGCGCCGCATACACTTTGGCAAATTCGTGGCCGAGTCCAAGTTT
CGATCCGAGCGCGAAGTCTACACTCGCATGATCAAGGCTGCCGACCGCGAGGGCATCGATCGCTCCATTACCAAT
GACGCGGTCGAGATGACGATTCTCGAGCGCCTCCGTCTCAAGGCCCTGACCTACGGCAAGGACCCGGCCGGGCAC
CAAAGCCCCGTCAAGATCGACGTCGACGCCGTCGTGGCCATGTACAAGGACTTTGTCATTCCCTTAACCAAAGAG
GTCGAAGTCGAGTACTTGATGCAGAGGCTGGAACCGGAACGGTGA
Transcript >Ophcf2|03982
ATGGACTCGGCCGTCGACATGGCCGACGCCGGCCACGATCTGCTGGATCTGTCGCAGATTCGCATCCAGTTAATA
CGCTTAGAAGATACCATTACCTTTCATCTCATCGAGAGGGTCCGATTCGCCCTCAACAAGACCATTTACGTCCCT
GGGGCTATTAGCATTCCCAACAGCGACCTCAGCTTCTTCGACTGGTACCTGCGCGAGCAAGAAAAGCTGCAGTCG
CTGATCCGACGCTTCGACTCACCAGACGAGTATCCTTTCTTCCCAGAAGCCGTGCGGACGCCCATCCTCAGGCCC
CTCGACTACCCCAAGATCCTGCATCCCAACAGCATCAACATCAACGCCAAGATTAAGTCGTTCTACATTGAAAAA
TTCTTGCCCGCCGTCTGTCCAGACTTTGGACGCGAGGACCGGGGAGAATCGCAGGAAAACTACGGCTCGACGGCG
ACTTGCGACATCGCCTGCCTCCAGGCCCTGTCGCGCCGCATACACTTTGGCAAATTCGTGGCCGAGTCCAAGTTT
CGATCCGAGCGCGAAGTCTACACTCGCATGATCAAGGCTGCCGACCGCGAGGGCATCGATCGCTCCATTACCAAT
GACGCGGTCGAGATGACGATTCTCGAGCGCCTCCGTCTCAAGGCCCTGACCTACGGCAAGGACCCGGCCGGGCAC
CAAAGCCCCGTCAAGATCGACGTCGACGCCGTCGTGGCCATGTACAAGGACTTTGTCATTCCCTTAACCAAAGAG
GTCGAAGTCGAGTACTTGATGCAGAGGCTGGAACCGGAACGGTGA
Gene >Ophcf2|03982
ATGGACTCGGCCGTCGACATGGCCGACGCCGGCCACGATCTGCTGGATCTGTCGCAGATTCGCATCCAGTTAATG
TAAAATCAAACAGCTCCATCCTCAACAAAGGGGGGATCGACCCGAGGCACACGAGCGTCCGTCGCGATATCAGCA
TGGCCAGGGACAGCCCCCGGCGTGGCAGCTTGCTGATGGTCTGCGCAGACGCTTAGAAGATACCATTACCTTTCA
TCTCATCGAGAGGGTCCGATTCGCCCTCAACAAGGTACCGTCCACGCCTCTTGCCTCTCAGCCATCTCGCGCTCA
TCATGACAGACCATTTACGTCCCTGGGGCTATTAGCATTCCCAACAGCGACCTCAGCTTCTTCGACTGGTACCTG
CGCGAGCAAGAAAAGCTGCAGTCGCTGATCCGACGCTTCGACTCACCAGACGAGTATCCTTTCTTCCCAGAAGCC
GTGCGGACGCCCATCCTCAGGCCCCTCGACTACCCCAAGATCCTGCATCCCAACAGCATCAACATCAACGCCAAG
ATTAAGTCGTTCTACATTGAAAAATTCTTGCCCGCCGTCTGTCCAGACTTTGGACGCGAGGACCGGGGAGAATCG
CAGGAAAACTACGGCTCGACGGCGACTTGCGACATCGCCTGCCTCCAGGCCCTGTCGCGCCGCATACACTTTGGC
AAATTCGTGGCCGAGTCCAAGTTTCGATCCGAGCGCGAAGTCTACACTCGCATGATCAAGGCTGCCGACCGCGAG
GGCATCGATCGCTCCATTACCAATGACGCGGTCGAGATGACGATTCTCGAGCGCCTCCGTCTCAAGGCCCTGACC
TACGGCAAGGACCCGGCCGGGCACCAAAGCCCCGTCAAGATCGACGTCGACGCCGTCGTGGCCATGTACAAGGAC
TTTGTCATTCCCTTAACCAAAGAGGTCGAAGTCGAGTACTTGATGCAGAGGCTGGAACCGGAACGGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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