© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03979 |
| Gene name | |
| Location | scaffold_04:540679..541982 |
| Strand | + |
| Gene length (bp) | 1303 |
| Transcript length (bp) | 1242 |
| Coding sequence length (bp) | 1242 |
| Protein length (aa) | 414 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13012 | MitMem_reg | Maintenance of mitochondrial structure and function | 1.9E-10 | 263 | 373 |
| PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 7.0E-08 | 19 | 126 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070122 | obsolete isopeptidase activity | Yes |
| GO:0140492 | metal-dependent deubiquitinase activity | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008237 | metallopeptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 80.08 | 45.91 | 114.26 |
| Alive | In ants, during behavior modification | 77.25 | 44.05 | 110.44 |
| Dead | In ants, recently dead | 57.37 | 32.11 | 82.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.880483 | no |
| Alive | Dead | 0.069085 | no |
| Dead | Fungus | 0.073286 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03979 MAAPAQNPLMSSQKGSQLQTVLHPLVLLAISDYVTRHSLRCQEGPIVGALLGQQNGREITIEHVFDCHTRATSGV EGGYLLDVDRFAARLEQMMTVHKERQLDLVGWYTLFPTSGPTPSVVPIHKQILQQWNESALLLGFHPEEALKHSV GGKLPLTIYESNYEVDDSGGGAEGDEDKRMDDGEAAALKLKFREVPYSVETDDTEMISMNYIAGAGGNASTVSGT ASAKEDRPARSVESNGKGKRRLVESEADDTAKSLPDADEVLTHDEEKTLASLTAKANAIKMLHARLRLIATYLER LPPSPPQTTEDSMDTDSTTPSHPILRQIQALVTRLDLVIPSDGEAFAAETLHQANDVELLGLLNSVMQAVGRARE VGRKSAVVENGKAASRRGPTGLSADSMFSLSSAGDIFL* |
| Coding | >Ophcf2|03979 ATGGCAGCGCCCGCCCAGAACCCGCTCATGTCCAGCCAGAAGGGCTCTCAGCTCCAGACGGTCCTCCATCCGCTC GTTCTGCTGGCCATATCCGACTACGTTACGCGGCATAGCTTGCGATGCCAGGAGGGACCCATCGTCGGCGCTCTC CTCGGGCAGCAAAACGGACGCGAAATAACGATAGAGCATGTCTTTGACTGCCATACGCGTGCTACGTCTGGGGTC GAGGGCGGGTACCTCTTGGACGTTGATCGGTTTGCGGCGAGGTTGGAACAGATGATGACGGTGCACAAGGAGAGG CAGCTTGACCTGGTCGGCTGGTACACGCTTTTTCCGACTTCGGGGCCGACGCCATCCGTCGTGCCCATCCACAAA CAGATTCTTCAGCAGTGGAACGAGTCAGCCTTGCTACTGGGTTTCCATCCGGAAGAGGCGTTGAAGCACTCAGTC GGCGGCAAGCTTCCGCTGACCATCTACGAGAGCAACTACGAAGTCGACGACAGCGGAGGCGGTGCTGAAGGCGAT GAGGATAAACGCATGGACGACGGCGAGGCAGCTGCCCTCAAGCTCAAGTTCCGCGAGGTGCCGTACTCGGTTGAG ACGGATGACACGGAGATGATAAGCATGAATTACATCGCCGGCGCAGGGGGTAACGCCTCCACCGTCTCCGGAACG GCCTCGGCGAAGGAGGATCGTCCCGCCCGCTCAGTAGAATCCAACGGCAAGGGAAAGCGAAGACTGGTGGAAAGC GAAGCAGACGACACAGCCAAATCCCTCCCCGACGCAGACGAAGTCCTAACCCACGACGAGGAAAAAACATTGGCC TCCCTAACCGCAAAAGCAAACGCCATCAAAATGCTCCACGCACGCCTCCGCCTCATAGCAACATACCTCGAACGC CTACCCCCCTCCCCACCCCAAACGACGGAAGACTCGATGGACACCGACTCAACCACCCCCTCACACCCCATCCTC CGCCAGATCCAAGCCCTCGTCACCCGCCTCGACCTCGTCATCCCCTCCGACGGCGAAGCCTTCGCCGCCGAAACG CTGCACCAGGCCAACGACGTCGAGCTCTTGGGCCTGCTCAATTCCGTCATGCAGGCCGTCGGTCGGGCCCGTGAG GTGGGCAGGAAATCGGCCGTCGTCGAGAATGGGAAGGCGGCTAGTCGGAGGGGGCCGACGGGGTTGTCGGCTGAT TCGATGTTTAGCTTGAGTAGCGCTGGCGATATCTTTTTGTGA |
| Transcript | >Ophcf2|03979 ATGGCAGCGCCCGCCCAGAACCCGCTCATGTCCAGCCAGAAGGGCTCTCAGCTCCAGACGGTCCTCCATCCGCTC GTTCTGCTGGCCATATCCGACTACGTTACGCGGCATAGCTTGCGATGCCAGGAGGGACCCATCGTCGGCGCTCTC CTCGGGCAGCAAAACGGACGCGAAATAACGATAGAGCATGTCTTTGACTGCCATACGCGTGCTACGTCTGGGGTC GAGGGCGGGTACCTCTTGGACGTTGATCGGTTTGCGGCGAGGTTGGAACAGATGATGACGGTGCACAAGGAGAGG CAGCTTGACCTGGTCGGCTGGTACACGCTTTTTCCGACTTCGGGGCCGACGCCATCCGTCGTGCCCATCCACAAA CAGATTCTTCAGCAGTGGAACGAGTCAGCCTTGCTACTGGGTTTCCATCCGGAAGAGGCGTTGAAGCACTCAGTC GGCGGCAAGCTTCCGCTGACCATCTACGAGAGCAACTACGAAGTCGACGACAGCGGAGGCGGTGCTGAAGGCGAT GAGGATAAACGCATGGACGACGGCGAGGCAGCTGCCCTCAAGCTCAAGTTCCGCGAGGTGCCGTACTCGGTTGAG ACGGATGACACGGAGATGATAAGCATGAATTACATCGCCGGCGCAGGGGGTAACGCCTCCACCGTCTCCGGAACG GCCTCGGCGAAGGAGGATCGTCCCGCCCGCTCAGTAGAATCCAACGGCAAGGGAAAGCGAAGACTGGTGGAAAGC GAAGCAGACGACACAGCCAAATCCCTCCCCGACGCAGACGAAGTCCTAACCCACGACGAGGAAAAAACATTGGCC TCCCTAACCGCAAAAGCAAACGCCATCAAAATGCTCCACGCACGCCTCCGCCTCATAGCAACATACCTCGAACGC CTACCCCCCTCCCCACCCCAAACGACGGAAGACTCGATGGACACCGACTCAACCACCCCCTCACACCCCATCCTC CGCCAGATCCAAGCCCTCGTCACCCGCCTCGACCTCGTCATCCCCTCCGACGGCGAAGCCTTCGCCGCCGAAACG CTGCACCAGGCCAACGACGTCGAGCTCTTGGGCCTGCTCAATTCCGTCATGCAGGCCGTCGGTCGGGCCCGTGAG GTGGGCAGGAAATCGGCCGTCGTCGAGAATGGGAAGGCGGCTAGTCGGAGGGGGCCGACGGGGTTGTCGGCTGAT TCGATGTTTAGCTTGAGTAGCGCTGGCGATATCTTTTTGTGA |
| Gene | >Ophcf2|03979 ATGGCAGCGCCCGCCCAGAACCCGCTCATGTCCAGCCAGAAGGGCTCTCAGCTCCAGACGGTCCTCCATCCGCTC GTTCTGCTGGCCATATCCGACTACGTTACGCGGCATAGCTTGCGATGCCAGGAGGGACCCATCGTCGGCGCTCTC CTCGGGCAGCAAAACGGACGCGAAATAACGATAGAGCATGTCTTTGACTGCCATACGCGTGCTACGTCTGGGGTC GAGGGCGGGTACCTCTTGGACGTTGATCGGTTTGCGGCGAGGTTGGAACAGAGTTAGTTTTGGATCTTGCGCTGT TTGTTGGTTGCGGTGATGAAGTTGACTTGAGTTTGCAGTGATGACGGTGCACAAGGAGAGGCAGCTTGACCTGGT CGGCTGGTACACGCTTTTTCCGACTTCGGGGCCGACGCCATCCGTCGTGCCCATCCACAAACAGATTCTTCAGCA GTGGAACGAGTCAGCCTTGCTACTGGGTTTCCATCCGGAAGAGGCGTTGAAGCACTCAGTCGGCGGCAAGCTTCC GCTGACCATCTACGAGAGCAACTACGAAGTCGACGACAGCGGAGGCGGTGCTGAAGGCGATGAGGATAAACGCAT GGACGACGGCGAGGCAGCTGCCCTCAAGCTCAAGTTCCGCGAGGTGCCGTACTCGGTTGAGACGGATGACACGGA GATGATAAGCATGAATTACATCGCCGGCGCAGGGGGTAACGCCTCCACCGTCTCCGGAACGGCCTCGGCGAAGGA GGATCGTCCCGCCCGCTCAGTAGAATCCAACGGCAAGGGAAAGCGAAGACTGGTGGAAAGCGAAGCAGACGACAC AGCCAAATCCCTCCCCGACGCAGACGAAGTCCTAACCCACGACGAGGAAAAAACATTGGCCTCCCTAACCGCAAA AGCAAACGCCATCAAAATGCTCCACGCACGCCTCCGCCTCATAGCAACATACCTCGAACGCCTACCCCCCTCCCC ACCCCAAACGACGGAAGACTCGATGGACACCGACTCAACCACCCCCTCACACCCCATCCTCCGCCAGATCCAAGC CCTCGTCACCCGCCTCGACCTCGTCATCCCCTCCGACGGCGAAGCCTTCGCCGCCGAAACGCTGCACCAGGCCAA CGACGTCGAGCTCTTGGGCCTGCTCAATTCCGTCATGCAGGCCGTCGGTCGGGCCCGTGAGGTGGGCAGGAAATC GGCCGTCGTCGAGAATGGGAAGGCGGCTAGTCGGAGGGGGCCGACGGGGTTGTCGGCTGATTCGATGTTTAGCTT GAGTAGCGCTGGCGATATCTTTTTGTGA |