© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03978 |
| Gene name | |
| Location | scaffold_04:538328..540148 |
| Strand | + |
| Gene length (bp) | 1820 |
| Transcript length (bp) | 1713 |
| Coding sequence length (bp) | 1713 |
| Protein length (aa) | 571 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 8.0E-39 | 79 | 479 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.2E-11 | 106 | 245 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 72 | 94 | 22 |
| 2 | 109 | 131 | 22 |
| 3 | 138 | 160 | 22 |
| 4 | 164 | 186 | 22 |
| 5 | 199 | 221 | 22 |
| 6 | 225 | 247 | 22 |
| 7 | 268 | 290 | 22 |
| 8 | 294 | 316 | 22 |
| 9 | 337 | 359 | 22 |
| 10 | 374 | 393 | 19 |
| 11 | 398 | 420 | 22 |
| 12 | 430 | 452 | 22 |
| 13 | 465 | 487 | 22 |
| 14 | 537 | 555 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03978 MATTDSKAGQGPFAGDTTDCTSVVSSSHPNRLPDASSEKQNPVDEPAEASLAKPLTRDETEENYKPKTIKFWLIV LSAFVSMFLVALDRTILSTAIPRITDDFRSLGDIGWYGSAYMLTTAAFQLLFGRIFKFYDLRITFLWCIVVFEVG SAICGAAPSSPVFIVGRAIAGLGSAGITTGTMMIIIPMVPLHKRPMFQSLFGVIFGISSVAGPLIGGAFTERVTW RWCFYMNLPVGVVAFIFLFFFLKIKTEPSQPAPLKKHIMRLDPLGTFFFVPSVVCLILALQWGGSTYPWNSWRII ILFVFCVLAAGAFAAVQILMPETATLPVRIIKKRTTLAATFFMFFLAGGMLMLVYYIPLWFQTTHGIDPVQSGIY TIPLILSLVVAAACSAIFTQRIGYFAPSMIASPCVTAIGEGLMTTFTPTTGSPHWIAYQFLVGFGIGLGMQTSMI SVQATLPKSDVPMGVAIVLFAQQLGGAIFVSVGQTILSGALVQKLSYLPGLDPQAIVRTGATDLRKMLPPGDSQI VLDAYNYACTRIFWAALALAFAQLISACCVEWRSIKKKKQGPASA* |
| Coding | >Ophcf2|03978 ATGGCTACGACCGACAGCAAAGCCGGCCAAGGGCCGTTCGCAGGCGATACCACCGACTGCACATCCGTCGTCTCT TCTAGCCACCCGAATCGTCTCCCCGATGCCAGCTCCGAGAAGCAGAACCCAGTCGACGAGCCGGCCGAGGCGTCA CTGGCTAAGCCTCTCACACGCGATGAGACCGAAGAGAACTACAAGCCCAAGACGATCAAGTTTTGGCTCATCGTC CTGTCCGCCTTCGTCTCCATGTTCCTCGTCGCCCTGGACCGCACCATCTTATCGACGGCCATCCCGCGCATTACC GACGACTTCCGCAGCCTGGGCGACATTGGCTGGTATGGCTCGGCTTACATGCTGACAACGGCTGCCTTTCAACTG CTCTTTGGTCGCATCTTCAAGTTTTACGACTTGCGCATCACCTTTCTCTGGTGCATCGTCGTCTTCGAGGTTGGA TCCGCCATTTGCGGCGCTGCTCCGTCTAGTCCCGTCTTCATCGTCGGTCGTGCCATTGCTGGCCTGGGATCAGCT GGCATCACCACGGGCACCATGATGATCATCATCCCCATGGTGCCCCTCCACAAGCGGCCCATGTTTCAATCCTTG TTTGGTGTCATATTCGGCATCTCCTCCGTCGCCGGGCCACTCATTGGTGGCGCTTTTACCGAGCGTGTCACTTGG AGGTGGTGTTTCTACATGAACCTCCCCGTCGGCGTCGTCGCATTCATCTTTCTCTTCTTCTTCCTCAAGATCAAG ACGGAACCAAGCCAGCCCGCGCCACTCAAGAAGCACATCATGCGTCTCGATCCGCTCGGCACCTTTTTCTTCGTC CCGTCCGTTGTCTGCCTCATCCTGGCGCTGCAATGGGGGGGTTCGACGTATCCATGGAATAGCTGGCGCATAATT ATCCTCTTCGTCTTCTGCGTACTGGCCGCTGGCGCCTTTGCTGCCGTGCAGATCCTGATGCCAGAGACGGCGACG CTACCGGTTCGCATCATCAAAAAACGGACCACGTTGGCGGCCACCTTTTTCATGTTCTTCTTGGCGGGCGGGATG CTCATGCTGGTCTACTACATTCCCCTATGGTTCCAGACAACGCACGGTATCGATCCGGTTCAGTCAGGCATCTAC ACGATCCCCCTCATCTTGAGTCTCGTCGTCGCCGCGGCTTGTTCCGCCATCTTTACGCAGCGGATAGGATATTTC GCGCCAAGCATGATCGCATCGCCTTGCGTCACGGCCATCGGCGAGGGCCTGATGACCACGTTTACGCCAACCACC GGCTCCCCGCATTGGATTGCCTATCAGTTCCTCGTCGGCTTCGGCATCGGCTTGGGAATGCAGACGTCCATGATT TCGGTCCAGGCGACGCTGCCAAAGTCCGATGTCCCCATGGGTGTGGCCATCGTCTTGTTCGCACAGCAGCTCGGA GGTGCCATTTTCGTCTCGGTCGGTCAGACGATACTCAGCGGCGCTCTCGTGCAGAAGCTCTCTTATCTCCCGGGG CTCGACCCTCAAGCCATTGTTCGAACTGGGGCGACGGACCTTCGCAAGATGCTCCCTCCTGGCGACTCGCAGATA GTCCTGGACGCATACAACTATGCTTGTACTCGGATATTCTGGGCTGCTCTCGCACTGGCCTTTGCTCAGCTGATA AGTGCGTGCTGCGTCGAGTGGCGGAGCATCAAGAAGAAGAAGCAGGGCCCTGCTAGCGCCTGA |
| Transcript | >Ophcf2|03978 ATGGCTACGACCGACAGCAAAGCCGGCCAAGGGCCGTTCGCAGGCGATACCACCGACTGCACATCCGTCGTCTCT TCTAGCCACCCGAATCGTCTCCCCGATGCCAGCTCCGAGAAGCAGAACCCAGTCGACGAGCCGGCCGAGGCGTCA CTGGCTAAGCCTCTCACACGCGATGAGACCGAAGAGAACTACAAGCCCAAGACGATCAAGTTTTGGCTCATCGTC CTGTCCGCCTTCGTCTCCATGTTCCTCGTCGCCCTGGACCGCACCATCTTATCGACGGCCATCCCGCGCATTACC GACGACTTCCGCAGCCTGGGCGACATTGGCTGGTATGGCTCGGCTTACATGCTGACAACGGCTGCCTTTCAACTG CTCTTTGGTCGCATCTTCAAGTTTTACGACTTGCGCATCACCTTTCTCTGGTGCATCGTCGTCTTCGAGGTTGGA TCCGCCATTTGCGGCGCTGCTCCGTCTAGTCCCGTCTTCATCGTCGGTCGTGCCATTGCTGGCCTGGGATCAGCT GGCATCACCACGGGCACCATGATGATCATCATCCCCATGGTGCCCCTCCACAAGCGGCCCATGTTTCAATCCTTG TTTGGTGTCATATTCGGCATCTCCTCCGTCGCCGGGCCACTCATTGGTGGCGCTTTTACCGAGCGTGTCACTTGG AGGTGGTGTTTCTACATGAACCTCCCCGTCGGCGTCGTCGCATTCATCTTTCTCTTCTTCTTCCTCAAGATCAAG ACGGAACCAAGCCAGCCCGCGCCACTCAAGAAGCACATCATGCGTCTCGATCCGCTCGGCACCTTTTTCTTCGTC CCGTCCGTTGTCTGCCTCATCCTGGCGCTGCAATGGGGGGGTTCGACGTATCCATGGAATAGCTGGCGCATAATT ATCCTCTTCGTCTTCTGCGTACTGGCCGCTGGCGCCTTTGCTGCCGTGCAGATCCTGATGCCAGAGACGGCGACG CTACCGGTTCGCATCATCAAAAAACGGACCACGTTGGCGGCCACCTTTTTCATGTTCTTCTTGGCGGGCGGGATG CTCATGCTGGTCTACTACATTCCCCTATGGTTCCAGACAACGCACGGTATCGATCCGGTTCAGTCAGGCATCTAC ACGATCCCCCTCATCTTGAGTCTCGTCGTCGCCGCGGCTTGTTCCGCCATCTTTACGCAGCGGATAGGATATTTC GCGCCAAGCATGATCGCATCGCCTTGCGTCACGGCCATCGGCGAGGGCCTGATGACCACGTTTACGCCAACCACC GGCTCCCCGCATTGGATTGCCTATCAGTTCCTCGTCGGCTTCGGCATCGGCTTGGGAATGCAGACGTCCATGATT TCGGTCCAGGCGACGCTGCCAAAGTCCGATGTCCCCATGGGTGTGGCCATCGTCTTGTTCGCACAGCAGCTCGGA GGTGCCATTTTCGTCTCGGTCGGTCAGACGATACTCAGCGGCGCTCTCGTGCAGAAGCTCTCTTATCTCCCGGGG CTCGACCCTCAAGCCATTGTTCGAACTGGGGCGACGGACCTTCGCAAGATGCTCCCTCCTGGCGACTCGCAGATA GTCCTGGACGCATACAACTATGCTTGTACTCGGATATTCTGGGCTGCTCTCGCACTGGCCTTTGCTCAGCTGATA AGTGCGTGCTGCGTCGAGTGGCGGAGCATCAAGAAGAAGAAGCAGGGCCCTGCTAGCGCCTGA |
| Gene | >Ophcf2|03978 ATGGCTACGACCGACAGCAAAGCCGGCCAAGGGCCGTTCGCAGGCGATACCACCGACTGCACATCCGTCGTCTCT TCTAGCCACCCGAATCGTCTCCCCGATGCCAGCTCCGAGAAGCAGAACCCAGTCGACGAGCCGGCCGAGGCGTCA CTGGCTAAGCCTCTCACACGCGATGAGACCGAAGAGAACTACAAGCCCAAGACGATCAAGTTTTGGCTCATCGTC CTGTCCGCCTTCGTCTCCATGTTCCTCGTCGCCCTGGACCGCACCATCTTATCGACGGCCATCCCGCGCATTACC GACGACTTCCGCAGCCTGGGCGACATTGGCTGGTATGGCTCGGCTTACATGCTGACAACGGCTGCCTTTCAACTG CTCTTTGGTCGCATCTTCAAGTTTTACGACTTGCGCATCACCTTTCTCTGGTGCATCGTCGTCTTCGAGGTTGGA TCCGCCATTTGCGGCGCTGCTCCGTCTAGTCCCGTCTTCATCGTCGGTCGTGCCATTGCTGGCCTGGGATCAGCT GGCATCACCACGGGCACCATGATGATCATCATCCCCATGGTGCCCCTCCACAAGCGGCCCATGTTTCAATGTACG TCTAGATGCTCGTGACTTGTTCCTCCGCTCCTGCTCATGCCTGTCTGCAGCCTTGTTTGGTGTCATATTCGGCAT CTCCTCCGTCGCCGGGCCACTCATTGGTGGCGCTTTTACCGAGCGTGTCACTTGGAGGTGGTGTTTCTACATGAA CCTCCCCGTCGGCGTCGTCGCATTCATCTTTCTCTTCTTCTTCCTCAAGATCAAGACGGAACCAAGCCAGCCCGC GCCACTCAAGAAGCACATCATGCGTCTCGATCCGCTCGGCACCTTTTTCTTCGTCCCGTCCGTTGTCTGCCTCAT CCTGGCGCTGCAATGGGGGGGTTCGACGTATCCATGGAATAGCTGGCGCATAATTATCCTCTTCGTCTTCTGCGT ACTGGCCGCTGGCGCCTTTGCTGCCGTGCAGATCCTGATGCCAGAGACGGCGACGCTACCGGTTCGCATCATCAA AAAACGGACCACGTTGGCGGCCACCTTTTTCATGTTCTTCTTGGCGGGCGGGATGCTCATGCTGGTCTACTACAT TCCCCTATGGTGTATGTTGTACACGTCCAGACCACGAGATGATGTCACTAATCCCTCCATCAGTCCAGACAACGC ACGGTATCGATCCGGTTCAGTCAGGCATCTACACGATCCCCCTCATCTTGAGTCTCGTCGTCGCCGCGGCTTGTT CCGCCATCTTTACGCAGCGGATAGGATATTTCGCGCCAAGCATGATCGCATCGCCTTGCGTCACGGCCATCGGCG AGGGCCTGATGACCACGTTTACGCCAACCACCGGCTCCCCGCATTGGATTGCCTATCAGTTCCTCGTCGGCTTCG GCATCGGCTTGGGAATGCAGACGTCCATGATTTCGGTCCAGGCGACGCTGCCAAAGTCCGATGTCCCCATGGGTG TGGCCATCGTCTTGTTCGCACAGCAGCTCGGAGGTGCCATTTTCGTCTCGGTCGGTCAGACGATACTCAGCGGCG CTCTCGTGCAGAAGCTCTCTTATCTCCCGGGGCTCGACCCTCAAGCCATTGTTCGAACTGGGGCGACGGACCTTC GCAAGATGCTCCCTCCTGGCGACTCGCAGATAGTCCTGGACGCATACAACTATGCTTGTACTCGGATATTCTGGG CTGCTCTCGCACTGGCCTTTGCTCAGCTGATAAGTGCGTGCTGCGTCGAGTGGCGGAGCATCAAGAAGAAGAAGC AGGGCCCTGCTAGCGCCTGA |