© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03960 |
| Gene name | |
| Location | scaffold_04:491534..493335 |
| Strand | + |
| Gene length (bp) | 1801 |
| Transcript length (bp) | 1683 |
| Coding sequence length (bp) | 1683 |
| Protein length (aa) | 561 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03619 | Solute_trans_a | Organic solute transporter Ostalpha | 7.5E-94 | 16 | 283 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 36 | 21 |
| 2 | 49 | 71 | 22 |
| 3 | 86 | 108 | 22 |
| 4 | 147 | 166 | 19 |
| 5 | 181 | 203 | 22 |
| 6 | 216 | 238 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 34.21 | 18.87 | 49.56 |
| Alive | In ants, during behavior modification | 61.49 | 34.89 | 88.09 |
| Dead | In ants, recently dead | 62.05 | 35.39 | 88.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.001226 | yes |
| Alive | Dead | 0.964075 | no |
| Dead | Fungus | 0.000851 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03960 MMASGGTGQKFTYATTVVAGVASLAATLLSVLSIWLQAKNYRKPLLQRYVIRILVMVPIYSIASWASMVSSTTAA FLDPIRDIYEAFTIYTFFQLLINYLGGERALIIMTHGRAPVQHLWPLNHVLRPVDISDPHSFLSIKRGILQYAWL KPLLSLATIIMKATGTYQEGYIGAGSGYLWSGIIYNISVTVSLYSLGLFWVCMHHDLQPFRPVPKFLCIKLIIFA SYWQGFFLSILVWLGAIPDDVEGYTRDNLAAAIQDFLICLEMPAFAVAHWYAFSWHDFANNNILSARMPLNYALK DAFGARDLIQDSKDTFRGSKYGYRAFDSGDKVMAHEESRSRLARLEEGMRYERGGKGKYWIPKPEEINAASPLLG SQGEPSSSRPDQINENQHGTFDEPELDGTDEGLFSAARLLEFGDWNYPVITASEPLSSRYRPSRENLGLGSPGWT VSSSASVADPSGRVPNADEIASAANPPQVVPIKKKKKKKVVKHAKPDPSTLGLDREAATSSAADQSHADESEAPQ ATRPAERAEEQAENEESRCNMPDGDEFRNVWGRDS* |
| Coding | >Ophcf2|03960 ATGATGGCCTCAGGAGGAACCGGCCAGAAGTTCACCTACGCCACGACGGTGGTGGCAGGGGTCGCCTCTCTGGCA GCGACTCTGCTCTCAGTCCTATCCATATGGCTTCAGGCAAAGAACTACCGAAAGCCCCTCCTCCAGCGCTATGTC ATCCGAATCCTCGTCATGGTGCCCATCTACTCCATTGCTTCGTGGGCTAGCATGGTGTCTTCTACCACAGCTGCC TTTCTCGATCCTATTCGAGACATTTACGAGGCTTTCACCATCTACACCTTCTTCCAGCTTCTCATCAACTACCTG GGCGGGGAGCGGGCCTTGATAATAATGACGCACGGTCGTGCCCCCGTCCAGCATCTGTGGCCCTTGAACCATGTG CTTCGTCCGGTCGACATCTCGGATCCGCATAGCTTTCTGTCTATCAAGCGTGGCATCTTGCAATATGCATGGCTC AAGCCCTTACTTTCCCTTGCGACCATCATCATGAAGGCCACGGGCACGTATCAGGAGGGCTACATCGGTGCCGGC TCTGGGTACTTGTGGAGTGGCATCATCTATAACATCAGCGTCACTGTCAGTCTCTACTCGCTGGGCTTATTCTGG GTGTGCATGCATCATGACCTGCAGCCGTTCCGGCCAGTCCCCAAGTTCCTCTGCATCAAGCTCATCATCTTTGCC TCGTACTGGCAAGGCTTCTTCTTGTCAATCCTCGTCTGGCTCGGGGCCATCCCCGACGATGTGGAAGGATACACA CGCGACAACCTCGCCGCTGCCATACAGGATTTCTTGATCTGCCTCGAGATGCCGGCCTTTGCCGTGGCGCATTGG TATGCCTTCTCGTGGCACGACTTTGCCAACAACAACATCCTCTCTGCGCGGATGCCGCTCAACTACGCCCTGAAG GACGCCTTTGGAGCCAGGGATCTGATTCAGGACTCCAAAGACACCTTCCGTGGTAGCAAGTATGGCTACAGGGCA TTCGACTCTGGTGACAAGGTCATGGCTCACGAGGAGTCGAGATCGAGGCTCGCCAGGCTCGAGGAGGGCATGCGC TACGAAAGAGGAGGCAAAGGTAAGTATTGGATACCAAAGCCGGAAGAAATCAACGCGGCCTCCCCGCTGCTGGGC TCTCAAGGCGAGCCGAGTTCTTCGCGCCCCGACCAAATCAATGAGAACCAGCACGGCACCTTTGACGAGCCGGAG CTGGATGGAACGGACGAGGGCTTGTTCAGCGCGGCGCGGCTTCTGGAGTTTGGAGACTGGAACTATCCCGTAATC ACCGCCAGCGAGCCGTTGAGCAGTAGATATCGGCCATCGAGGGAGAATTTGGGACTTGGTTCCCCCGGATGGACA GTCTCCTCTTCAGCATCGGTTGCCGACCCGTCAGGCAGAGTGCCGAACGCGGACGAGATCGCGTCTGCCGCCAAT CCACCGCAGGTTGTTCCAATCAAGAAGAAGAAAAAGAAGAAGGTGGTGAAACACGCCAAGCCTGACCCGTCCACA TTGGGTCTCGATCGTGAAGCCGCAACTTCTTCGGCAGCTGACCAAAGCCATGCGGACGAATCCGAGGCACCACAA GCAACACGACCGGCCGAGAGAGCAGAAGAGCAGGCCGAGAACGAAGAGTCTCGATGCAACATGCCAGATGGCGAC GAGTTCCGCAATGTCTGGGGTAGAGATTCGTGA |
| Transcript | >Ophcf2|03960 ATGATGGCCTCAGGAGGAACCGGCCAGAAGTTCACCTACGCCACGACGGTGGTGGCAGGGGTCGCCTCTCTGGCA GCGACTCTGCTCTCAGTCCTATCCATATGGCTTCAGGCAAAGAACTACCGAAAGCCCCTCCTCCAGCGCTATGTC ATCCGAATCCTCGTCATGGTGCCCATCTACTCCATTGCTTCGTGGGCTAGCATGGTGTCTTCTACCACAGCTGCC TTTCTCGATCCTATTCGAGACATTTACGAGGCTTTCACCATCTACACCTTCTTCCAGCTTCTCATCAACTACCTG GGCGGGGAGCGGGCCTTGATAATAATGACGCACGGTCGTGCCCCCGTCCAGCATCTGTGGCCCTTGAACCATGTG CTTCGTCCGGTCGACATCTCGGATCCGCATAGCTTTCTGTCTATCAAGCGTGGCATCTTGCAATATGCATGGCTC AAGCCCTTACTTTCCCTTGCGACCATCATCATGAAGGCCACGGGCACGTATCAGGAGGGCTACATCGGTGCCGGC TCTGGGTACTTGTGGAGTGGCATCATCTATAACATCAGCGTCACTGTCAGTCTCTACTCGCTGGGCTTATTCTGG GTGTGCATGCATCATGACCTGCAGCCGTTCCGGCCAGTCCCCAAGTTCCTCTGCATCAAGCTCATCATCTTTGCC TCGTACTGGCAAGGCTTCTTCTTGTCAATCCTCGTCTGGCTCGGGGCCATCCCCGACGATGTGGAAGGATACACA CGCGACAACCTCGCCGCTGCCATACAGGATTTCTTGATCTGCCTCGAGATGCCGGCCTTTGCCGTGGCGCATTGG TATGCCTTCTCGTGGCACGACTTTGCCAACAACAACATCCTCTCTGCGCGGATGCCGCTCAACTACGCCCTGAAG GACGCCTTTGGAGCCAGGGATCTGATTCAGGACTCCAAAGACACCTTCCGTGGTAGCAAGTATGGCTACAGGGCA TTCGACTCTGGTGACAAGGTCATGGCTCACGAGGAGTCGAGATCGAGGCTCGCCAGGCTCGAGGAGGGCATGCGC TACGAAAGAGGAGGCAAAGGTAAGTATTGGATACCAAAGCCGGAAGAAATCAACGCGGCCTCCCCGCTGCTGGGC TCTCAAGGCGAGCCGAGTTCTTCGCGCCCCGACCAAATCAATGAGAACCAGCACGGCACCTTTGACGAGCCGGAG CTGGATGGAACGGACGAGGGCTTGTTCAGCGCGGCGCGGCTTCTGGAGTTTGGAGACTGGAACTATCCCGTAATC ACCGCCAGCGAGCCGTTGAGCAGTAGATATCGGCCATCGAGGGAGAATTTGGGACTTGGTTCCCCCGGATGGACA GTCTCCTCTTCAGCATCGGTTGCCGACCCGTCAGGCAGAGTGCCGAACGCGGACGAGATCGCGTCTGCCGCCAAT CCACCGCAGGTTGTTCCAATCAAGAAGAAGAAAAAGAAGAAGGTGGTGAAACACGCCAAGCCTGACCCGTCCACA TTGGGTCTCGATCGTGAAGCCGCAACTTCTTCGGCAGCTGACCAAAGCCATGCGGACGAATCCGAGGCACCACAA GCAACACGACCGGCCGAGAGAGCAGAAGAGCAGGCCGAGAACGAAGAGTCTCGATGCAACATGCCAGATGGCGAC GAGTTCCGCAATGTCTGGGGTAGAGATTCGTGA |
| Gene | >Ophcf2|03960 ATGATGGCCTCAGGAGGAACCGGCCAGAAGTTCACCTACGCCACGACGGTGGTGGCAGGGGTCGCCTCTCTGGCA GCGACTCTGCTCTCAGTCCTGTACGTCGGCTAACCTCCCCGACCTCTGAGGCACAGAAGGCATATGCTGATACGT CCCGTGAAATAGATCCATATGGCTTCAGGCAAAGAACTACCGAAAGCCCCTCCTCCAGCGCTATGTCATCCGAAT CCTCGTCATGGTGCCCATCTACTCCATTGCTTCGTGGGCTAGCATGGTGTCTTCTACCACAGCTGCCTTTCTCGA TCCTATTCGAGACATTTACGAGGCTTTCACCATCTACACCTTCTTCCAGCTTCTCATCAACTACCTGGGCGGGGA GCGGGCCTTGATAATAATGACGCACGGTCGTGCCCCCGTCCAGCATCTGTGGCCCTTGAACCATGTGCTTCGTCC GGTCGACATCTCGGATCCGCATAGCTTTCTGTCTATCAAGCGTGGCATCTTGCAATATGCATGGCTCAAGCCCTT ACTTTCCCTTGCGACCATCATCATGAAGGCCACGGGCACGTATCAGGAGGGCTACATCGGTGCCGGCTCTGGGTA CTTGTGGAGTGGCATCATCTATAACATCAGCGTCACTGTCAGTCTCTACTCGCTGGGCTTATTCTGGGTGTGCAT GCATCATGACCTGCAGCCGTTCCGGCCAGTCCCCAAGTTCCTCTGCATCAAGCTCATCATCTTTGCCTCGTACTG GCAAGGCTTCTTCTTGTCAATCCTCGTCTGGCTCGGGGCCATCCCCGACGATGTGGAAGGATACACACGCGACAA CCTCGCCGCTGCCATACAGGATTTCTTGATCTGCCTCGAGATGCCGGCCTTTGCCGTGGCGCATTGGTATGCCTT CTCGTGGCACGACTTTGCCAACAACAACATCCTCTCTGCGCGGATGCCGCTCAACTACGCCCTGAAGGACGCCTT TGGAGCCAGGGATCTGATTCAGGACTCCAAAGACACCTTCCGTGGTAGCAAGTATGGCTACAGGGCATTCGACTC TGGTGACAAGGTCATGGCTCACGAGGAGTCGAGATCGAGGCTCGCCAGGCTCGAGGAGGGCATGCGCTACGAAAG AGGAGGCAAAGGTAAGTATTGGATACCAAAGCCGGAAGAAATCAACGCGGCCTCCCCGCTGCTGGGCTCTCAAGG CGAGCCGAGTTCTTCGCGCCCCGACCAAATCAATGAGAACCAGCACGGCACCTTTGACGAGCCGGAGCTGGATGG AACGGACGAGGGCTTGTTCAGCGCGGCGCGGCTTCTGGAGTTTGGAGACTGGAACGTGAGTGCCGGCCCCTCTCG ACCTCGTTTCAAACTGACGATTCGGCACTAGTATCCCGTAATCACCGCCAGCGAGCCGTTGAGCAGTAGATATCG GCCATCGAGGGAGAATTTGGGACTTGGTTCCCCCGGATGGACAGTCTCCTCTTCAGCATCGGTTGCCGACCCGTC AGGCAGAGTGCCGAACGCGGACGAGATCGCGTCTGCCGCCAATCCACCGCAGGTTGTTCCAATCAAGAAGAAGAA AAAGAAGAAGGTGGTGAAACACGCCAAGCCTGACCCGTCCACATTGGGTCTCGATCGTGAAGCCGCAACTTCTTC GGCAGCTGACCAAAGCCATGCGGACGAATCCGAGGCACCACAAGCAACACGACCGGCCGAGAGAGCAGAAGAGCA GGCCGAGAACGAAGAGTCTCGATGCAACATGCCAGATGGCGACGAGTTCCGCAATGTCTGGGGTAGAGATTCGTG A |