Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03940
Gene name
Locationscaffold_04:416969..418133
Strand-
Gene length (bp)1164
Transcript length (bp)1107
Coding sequence length (bp)1107
Protein length (aa) 369

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 61 0.45

Transmembrane Domains

Domain # Start End Length
1 217 239 22
2 254 273 19
3 292 314 22
4 329 351 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 29.87 14.73 45.01
Alive In ants, during behavior modification 69.14 38.23 100.06
Dead In ants, recently dead 55.26 30.22 80.30

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.190025 no
Dead Fungus 0.002959 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03940
MASMPNHEDGYDEPVSLSTESITVDGTPLRLRPARSLPPWIDSYEDRYGPPTEEQLRLLKAPERILHTQRNAVPK
EPTRRVSKDGFVDWDDPQLGPAKDARSGVPHFLRYGRASKRGRRWDHLRTAEPVIISGHRLATSQPSPTWKEFLD
ASSWGHIPNEKSEVVDYDVLKKMQPSFDGLGPVLPFHAESKGSRRRKTLSFSKRLWIAMMRSSLSPLLFRLIVVV
TSILALGVASRIFQREEAVDREGAERTQSLFAVAVDCLAIPYIGYMLYDEYTGKPVGLRSGVSKIRLILLDVLFI
IFKSASTALAFESIVYHRIDELQAWQLSAVLGVFELVGLMSWTMNFVVNVFRTVERLGGGADLEGRLA*
Coding >Ophcf2|03940
ATGGCGTCTATGCCCAACCATGAAGATGGCTACGATGAGCCCGTCTCTCTCAGTACCGAGAGCATCACCGTCGAT
GGGACTCCGCTGCGGCTGCGGCCTGCGCGGTCGCTGCCTCCCTGGATCGACTCGTACGAGGATCGATACGGCCCT
CCGACCGAGGAACAGCTTCGTCTCCTCAAAGCGCCCGAGCGCATCCTACATACCCAGCGCAACGCAGTCCCCAAA
GAACCCACGCGCCGCGTCTCAAAGGACGGCTTCGTCGACTGGGACGACCCTCAACTCGGGCCAGCAAAGGACGCC
CGCTCTGGTGTTCCTCATTTCCTGCGCTACGGCCGGGCCTCGAAGCGCGGTAGGAGATGGGATCATCTGCGCACA
GCTGAGCCCGTCATCATCAGCGGTCACCGTCTAGCGACATCGCAGCCTTCGCCGACATGGAAGGAGTTCCTCGAC
GCCTCCTCGTGGGGCCACATACCCAACGAAAAGTCCGAGGTGGTCGATTACGATGTCTTGAAGAAGATGCAACCA
TCTTTCGATGGACTCGGCCCCGTCTTACCCTTTCACGCCGAATCCAAGGGCTCGCGTCGTCGTAAGACTTTGTCC
TTTTCCAAACGCCTCTGGATCGCCATGATGCGGAGCTCCTTGTCTCCTCTCCTGTTTCGTCTCATCGTCGTCGTC
ACATCGATTCTCGCCCTCGGCGTTGCTTCGCGCATCTTTCAGCGCGAAGAGGCCGTAGATCGAGAGGGAGCCGAA
CGCACGCAGTCCTTGTTTGCAGTCGCCGTCGACTGCCTCGCCATTCCGTACATAGGCTACATGTTGTACGATGAG
TACACGGGCAAGCCTGTCGGTCTCCGATCCGGCGTTTCCAAGATACGCCTCATCCTCCTCGACGTCTTATTCATC
ATCTTCAAGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATCGTCTACCATCGCATCGACGAGCTTCAAGCATGG
CAGCTTTCGGCCGTCTTGGGCGTTTTTGAGCTCGTCGGGCTCATGTCATGGACCATGAACTTTGTCGTCAACGTC
TTCCGCACGGTGGAACGCCTGGGAGGCGGTGCCGATCTGGAGGGCAGGTTGGCATAG
Transcript >Ophcf2|03940
ATGGCGTCTATGCCCAACCATGAAGATGGCTACGATGAGCCCGTCTCTCTCAGTACCGAGAGCATCACCGTCGAT
GGGACTCCGCTGCGGCTGCGGCCTGCGCGGTCGCTGCCTCCCTGGATCGACTCGTACGAGGATCGATACGGCCCT
CCGACCGAGGAACAGCTTCGTCTCCTCAAAGCGCCCGAGCGCATCCTACATACCCAGCGCAACGCAGTCCCCAAA
GAACCCACGCGCCGCGTCTCAAAGGACGGCTTCGTCGACTGGGACGACCCTCAACTCGGGCCAGCAAAGGACGCC
CGCTCTGGTGTTCCTCATTTCCTGCGCTACGGCCGGGCCTCGAAGCGCGGTAGGAGATGGGATCATCTGCGCACA
GCTGAGCCCGTCATCATCAGCGGTCACCGTCTAGCGACATCGCAGCCTTCGCCGACATGGAAGGAGTTCCTCGAC
GCCTCCTCGTGGGGCCACATACCCAACGAAAAGTCCGAGGTGGTCGATTACGATGTCTTGAAGAAGATGCAACCA
TCTTTCGATGGACTCGGCCCCGTCTTACCCTTTCACGCCGAATCCAAGGGCTCGCGTCGTCGTAAGACTTTGTCC
TTTTCCAAACGCCTCTGGATCGCCATGATGCGGAGCTCCTTGTCTCCTCTCCTGTTTCGTCTCATCGTCGTCGTC
ACATCGATTCTCGCCCTCGGCGTTGCTTCGCGCATCTTTCAGCGCGAAGAGGCCGTAGATCGAGAGGGAGCCGAA
CGCACGCAGTCCTTGTTTGCAGTCGCCGTCGACTGCCTCGCCATTCCGTACATAGGCTACATGTTGTACGATGAG
TACACGGGCAAGCCTGTCGGTCTCCGATCCGGCGTTTCCAAGATACGCCTCATCCTCCTCGACGTCTTATTCATC
ATCTTCAAGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATCGTCTACCATCGCATCGACGAGCTTCAAGCATGG
CAGCTTTCGGCCGTCTTGGGCGTTTTTGAGCTCGTCGGGCTCATGTCATGGACCATGAACTTTGTCGTCAACGTC
TTCCGCACGGTGGAACGCCTGGGAGGCGGTGCCGATCTGGAGGGCAGGTTGGCATAG
Gene >Ophcf2|03940
ATGGCGTCTATGCCCAACCATGAAGATGGCTACGATGAGCCCGTCTCTCTCAGTACCGAGAGCATCACCGTCGAT
GGGACTCCGCTGCGGCTGCGGCCTGCGCGGTCGCTGCCTCGTACGCGATTTGCTCGACTCTCGTTTGGCTATCCC
GTTGGCTGACTTTGACGCCCAGCCTGGATCGACTCGTACGAGGATCGATACGGCCCTCCGACCGAGGAACAGCTT
CGTCTCCTCAAAGCGCCCGAGCGCATCCTACATACCCAGCGCAACGCAGTCCCCAAAGAACCCACGCGCCGCGTC
TCAAAGGACGGCTTCGTCGACTGGGACGACCCTCAACTCGGGCCAGCAAAGGACGCCCGCTCTGGTGTTCCTCAT
TTCCTGCGCTACGGCCGGGCCTCGAAGCGCGGTAGGAGATGGGATCATCTGCGCACAGCTGAGCCCGTCATCATC
AGCGGTCACCGTCTAGCGACATCGCAGCCTTCGCCGACATGGAAGGAGTTCCTCGACGCCTCCTCGTGGGGCCAC
ATACCCAACGAAAAGTCCGAGGTGGTCGATTACGATGTCTTGAAGAAGATGCAACCATCTTTCGATGGACTCGGC
CCCGTCTTACCCTTTCACGCCGAATCCAAGGGCTCGCGTCGTCGTAAGACTTTGTCCTTTTCCAAACGCCTCTGG
ATCGCCATGATGCGGAGCTCCTTGTCTCCTCTCCTGTTTCGTCTCATCGTCGTCGTCACATCGATTCTCGCCCTC
GGCGTTGCTTCGCGCATCTTTCAGCGCGAAGAGGCCGTAGATCGAGAGGGAGCCGAACGCACGCAGTCCTTGTTT
GCAGTCGCCGTCGACTGCCTCGCCATTCCGTACATAGGCTACATGTTGTACGATGAGTACACGGGCAAGCCTGTC
GGTCTCCGATCCGGCGTTTCCAAGATACGCCTCATCCTCCTCGACGTCTTATTCATCATCTTCAAGTCGGCCAGC
ACGGCACTGGCGTTTGAGAGCATCGTCTACCATCGCATCGACGAGCTTCAAGCATGGCAGCTTTCGGCCGTCTTG
GGCGTTTTTGAGCTCGTCGGGCTCATGTCATGGACCATGAACTTTGTCGTCAACGTCTTCCGCACGGTGGAACGC
CTGGGAGGCGGTGCCGATCTGGAGGGCAGGTTGGCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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