© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|03940 |
| Gene name | |
| Location | scaffold_04:416969..418133 |
| Strand | - |
| Gene length (bp) | 1164 |
| Transcript length (bp) | 1107 |
| Coding sequence length (bp) | 1107 |
| Protein length (aa) | 369 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 217 | 239 | 22 |
| 2 | 254 | 273 | 19 |
| 3 | 292 | 314 | 22 |
| 4 | 329 | 351 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 29.87 | 14.73 | 45.01 |
| Alive | In ants, during behavior modification | 69.14 | 38.23 | 100.06 |
| Dead | In ants, recently dead | 55.26 | 30.22 | 80.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.190025 | no |
| Dead | Fungus | 0.002959 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03940 MASMPNHEDGYDEPVSLSTESITVDGTPLRLRPARSLPPWIDSYEDRYGPPTEEQLRLLKAPERILHTQRNAVPK EPTRRVSKDGFVDWDDPQLGPAKDARSGVPHFLRYGRASKRGRRWDHLRTAEPVIISGHRLATSQPSPTWKEFLD ASSWGHIPNEKSEVVDYDVLKKMQPSFDGLGPVLPFHAESKGSRRRKTLSFSKRLWIAMMRSSLSPLLFRLIVVV TSILALGVASRIFQREEAVDREGAERTQSLFAVAVDCLAIPYIGYMLYDEYTGKPVGLRSGVSKIRLILLDVLFI IFKSASTALAFESIVYHRIDELQAWQLSAVLGVFELVGLMSWTMNFVVNVFRTVERLGGGADLEGRLA* |
| Coding | >Ophcf2|03940 ATGGCGTCTATGCCCAACCATGAAGATGGCTACGATGAGCCCGTCTCTCTCAGTACCGAGAGCATCACCGTCGAT GGGACTCCGCTGCGGCTGCGGCCTGCGCGGTCGCTGCCTCCCTGGATCGACTCGTACGAGGATCGATACGGCCCT CCGACCGAGGAACAGCTTCGTCTCCTCAAAGCGCCCGAGCGCATCCTACATACCCAGCGCAACGCAGTCCCCAAA GAACCCACGCGCCGCGTCTCAAAGGACGGCTTCGTCGACTGGGACGACCCTCAACTCGGGCCAGCAAAGGACGCC CGCTCTGGTGTTCCTCATTTCCTGCGCTACGGCCGGGCCTCGAAGCGCGGTAGGAGATGGGATCATCTGCGCACA GCTGAGCCCGTCATCATCAGCGGTCACCGTCTAGCGACATCGCAGCCTTCGCCGACATGGAAGGAGTTCCTCGAC GCCTCCTCGTGGGGCCACATACCCAACGAAAAGTCCGAGGTGGTCGATTACGATGTCTTGAAGAAGATGCAACCA TCTTTCGATGGACTCGGCCCCGTCTTACCCTTTCACGCCGAATCCAAGGGCTCGCGTCGTCGTAAGACTTTGTCC TTTTCCAAACGCCTCTGGATCGCCATGATGCGGAGCTCCTTGTCTCCTCTCCTGTTTCGTCTCATCGTCGTCGTC ACATCGATTCTCGCCCTCGGCGTTGCTTCGCGCATCTTTCAGCGCGAAGAGGCCGTAGATCGAGAGGGAGCCGAA CGCACGCAGTCCTTGTTTGCAGTCGCCGTCGACTGCCTCGCCATTCCGTACATAGGCTACATGTTGTACGATGAG TACACGGGCAAGCCTGTCGGTCTCCGATCCGGCGTTTCCAAGATACGCCTCATCCTCCTCGACGTCTTATTCATC ATCTTCAAGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATCGTCTACCATCGCATCGACGAGCTTCAAGCATGG CAGCTTTCGGCCGTCTTGGGCGTTTTTGAGCTCGTCGGGCTCATGTCATGGACCATGAACTTTGTCGTCAACGTC TTCCGCACGGTGGAACGCCTGGGAGGCGGTGCCGATCTGGAGGGCAGGTTGGCATAG |
| Transcript | >Ophcf2|03940 ATGGCGTCTATGCCCAACCATGAAGATGGCTACGATGAGCCCGTCTCTCTCAGTACCGAGAGCATCACCGTCGAT GGGACTCCGCTGCGGCTGCGGCCTGCGCGGTCGCTGCCTCCCTGGATCGACTCGTACGAGGATCGATACGGCCCT CCGACCGAGGAACAGCTTCGTCTCCTCAAAGCGCCCGAGCGCATCCTACATACCCAGCGCAACGCAGTCCCCAAA GAACCCACGCGCCGCGTCTCAAAGGACGGCTTCGTCGACTGGGACGACCCTCAACTCGGGCCAGCAAAGGACGCC CGCTCTGGTGTTCCTCATTTCCTGCGCTACGGCCGGGCCTCGAAGCGCGGTAGGAGATGGGATCATCTGCGCACA GCTGAGCCCGTCATCATCAGCGGTCACCGTCTAGCGACATCGCAGCCTTCGCCGACATGGAAGGAGTTCCTCGAC GCCTCCTCGTGGGGCCACATACCCAACGAAAAGTCCGAGGTGGTCGATTACGATGTCTTGAAGAAGATGCAACCA TCTTTCGATGGACTCGGCCCCGTCTTACCCTTTCACGCCGAATCCAAGGGCTCGCGTCGTCGTAAGACTTTGTCC TTTTCCAAACGCCTCTGGATCGCCATGATGCGGAGCTCCTTGTCTCCTCTCCTGTTTCGTCTCATCGTCGTCGTC ACATCGATTCTCGCCCTCGGCGTTGCTTCGCGCATCTTTCAGCGCGAAGAGGCCGTAGATCGAGAGGGAGCCGAA CGCACGCAGTCCTTGTTTGCAGTCGCCGTCGACTGCCTCGCCATTCCGTACATAGGCTACATGTTGTACGATGAG TACACGGGCAAGCCTGTCGGTCTCCGATCCGGCGTTTCCAAGATACGCCTCATCCTCCTCGACGTCTTATTCATC ATCTTCAAGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATCGTCTACCATCGCATCGACGAGCTTCAAGCATGG CAGCTTTCGGCCGTCTTGGGCGTTTTTGAGCTCGTCGGGCTCATGTCATGGACCATGAACTTTGTCGTCAACGTC TTCCGCACGGTGGAACGCCTGGGAGGCGGTGCCGATCTGGAGGGCAGGTTGGCATAG |
| Gene | >Ophcf2|03940 ATGGCGTCTATGCCCAACCATGAAGATGGCTACGATGAGCCCGTCTCTCTCAGTACCGAGAGCATCACCGTCGAT GGGACTCCGCTGCGGCTGCGGCCTGCGCGGTCGCTGCCTCGTACGCGATTTGCTCGACTCTCGTTTGGCTATCCC GTTGGCTGACTTTGACGCCCAGCCTGGATCGACTCGTACGAGGATCGATACGGCCCTCCGACCGAGGAACAGCTT CGTCTCCTCAAAGCGCCCGAGCGCATCCTACATACCCAGCGCAACGCAGTCCCCAAAGAACCCACGCGCCGCGTC TCAAAGGACGGCTTCGTCGACTGGGACGACCCTCAACTCGGGCCAGCAAAGGACGCCCGCTCTGGTGTTCCTCAT TTCCTGCGCTACGGCCGGGCCTCGAAGCGCGGTAGGAGATGGGATCATCTGCGCACAGCTGAGCCCGTCATCATC AGCGGTCACCGTCTAGCGACATCGCAGCCTTCGCCGACATGGAAGGAGTTCCTCGACGCCTCCTCGTGGGGCCAC ATACCCAACGAAAAGTCCGAGGTGGTCGATTACGATGTCTTGAAGAAGATGCAACCATCTTTCGATGGACTCGGC CCCGTCTTACCCTTTCACGCCGAATCCAAGGGCTCGCGTCGTCGTAAGACTTTGTCCTTTTCCAAACGCCTCTGG ATCGCCATGATGCGGAGCTCCTTGTCTCCTCTCCTGTTTCGTCTCATCGTCGTCGTCACATCGATTCTCGCCCTC GGCGTTGCTTCGCGCATCTTTCAGCGCGAAGAGGCCGTAGATCGAGAGGGAGCCGAACGCACGCAGTCCTTGTTT GCAGTCGCCGTCGACTGCCTCGCCATTCCGTACATAGGCTACATGTTGTACGATGAGTACACGGGCAAGCCTGTC GGTCTCCGATCCGGCGTTTCCAAGATACGCCTCATCCTCCTCGACGTCTTATTCATCATCTTCAAGTCGGCCAGC ACGGCACTGGCGTTTGAGAGCATCGTCTACCATCGCATCGACGAGCTTCAAGCATGGCAGCTTTCGGCCGTCTTG GGCGTTTTTGAGCTCGTCGGGCTCATGTCATGGACCATGAACTTTGTCGTCAACGTCTTCCGCACGGTGGAACGC CTGGGAGGCGGTGCCGATCTGGAGGGCAGGTTGGCATAG |