Protein ID | Ophcf2|03931 |
Gene name | |
Location | scaffold_04:387040..389200 |
Strand | - |
Gene length (bp) | 2160 |
Transcript length (bp) | 1896 |
Coding sequence length (bp) | 1896 |
Protein length (aa) | 632 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13692 | Glyco_trans_1_4 | Glycosyl transferases group 1 | 2.7E-06 | 479 | 593 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1927 | 0.3619 | 0.116 | 0.1414 | 0.0867 | 0.0233 | 0.8447 | 0.2283 | 0.4094 | 0.0069 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 177 | 199 | 22 |
CAZyme category | E-value | Start | End |
---|---|---|---|
GT33 | 3.0E-136 | 215 | 626 |
Orthofinder run ID | 4 |
Orthogroup | 4367 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03931 MLVIDDKDLSNAKSRLRSAGFEDWTRPYSSLDLSFCKEMQLTDAVDCREFTNLDYISSCFTFPKQIPVKLIVVLV PSSYAHVTVTPAPELVALRQDGLIWPNSSTLLQSFVGTLMRETEVDMWTAMLGLWALFVYGKSEQHDHVLSGWDD ATASEWFKDVLRLMEGYHTHDPTVMAALVASVVAGALFTVALGCALGLVSRLIPSRYRPAPDASQHVQVLVLGDL GRSPRMQYHALSLASHGYHVDLVAFKETARHPGLIGNARVSMYALSPQPECIAWGTLPLFVNLVAKVVHQFCTLF YTLTYRTPPARCIVIQNPPSIPTFHVALLVALLRGSKLVVDWHNYGYSILAQKPLYRPLVPLYRCYELSLGRFLG HVNLTVTDAMARQLRSRLRGPVHTLHDRPAETFRPEPSAERRLAFLSALPETEGQARDIVDGNVRLLVSSTSWTP DEDFGILLEALESYANPDADSPAEPPSPILAIITGKGPEREAYLERIKRLQDGGRLPGIRVLTAWLSTRDYASLL AAADLGVSLHKSSSGVDLPMKVVDMFGAGLPVAAYSAFESFGELVREGVNGCGFETSDQLAKILARLFSAAGQRE LAALRQGAIKEGAIRWDDEWDRVVAPLMESI* |
Coding | >Ophcf2|03931 ATGCTCGTCATCGATGATAAAGACTTGAGTAATGCCAAAAGCAGACTGCGTTCGGCCGGCTTCGAAGACTGGACT CGGCCGTACAGCTCGCTTGACCTGAGCTTCTGCAAAGAGATGCAGTTGACGGACGCGGTCGACTGCCGCGAGTTT ACAAATCTGGATTACATCTCGTCATGCTTCACTTTCCCGAAACAGATACCGGTCAAACTCATAGTCGTCCTCGTT CCGTCTTCTTACGCCCACGTAACTGTCACGCCGGCGCCAGAGCTAGTCGCTCTCCGCCAAGACGGACTCATCTGG CCGAACTCATCCACCCTTCTTCAGAGCTTCGTTGGGACACTAATGCGGGAAACCGAAGTGGACATGTGGACGGCA ATGCTCGGCTTATGGGCCCTCTTCGTGTATGGGAAATCTGAGCAGCATGACCATGTCTTGAGCGGTTGGGATGAC GCGACGGCCAGCGAATGGTTCAAGGATGTACTCAGACTTATGGAGGGCTATCACACCCACGATCCGACCGTCATG GCGGCCCTCGTCGCCTCCGTCGTCGCCGGCGCCCTCTTCACCGTCGCCCTCGGATGCGCCCTCGGACTCGTGTCC CGCCTCATCCCTTCACGCTACCGTCCCGCCCCCGACGCTTCCCAGCACGTCCAGGTGCTCGTCCTCGGCGACTTG GGCCGCAGCCCGCGCATGCAATACCACGCCCTCAGCTTGGCCAGCCACGGCTATCACGTCGACCTGGTCGCCTTC AAGGAGACGGCCAGACATCCGGGCCTCATTGGCAATGCCCGCGTCTCAATGTACGCCCTCTCGCCCCAGCCCGAG TGTATCGCTTGGGGCACCCTGCCCTTGTTCGTCAACCTCGTCGCAAAGGTCGTCCATCAGTTCTGCACCCTCTTT TACACGCTTACGTACCGCACGCCGCCCGCCCGCTGCATCGTCATTCAAAATCCGCCTTCGATTCCCACCTTTCAC GTCGCCCTCTTGGTCGCCCTGCTCCGCGGAAGCAAGCTCGTCGTCGACTGGCACAACTACGGCTACTCCATACTC GCTCAGAAGCCGCTCTATAGACCCCTGGTTCCGCTTTATCGCTGCTACGAGCTGAGCCTCGGCCGCTTCCTCGGC CATGTCAACCTCACCGTCACTGACGCCATGGCACGCCAGCTTCGTTCCCGTCTGAGGGGTCCCGTTCACACCTTG CACGACCGCCCCGCCGAGACTTTCCGGCCCGAGCCGTCGGCCGAGCGACGTTTGGCCTTCTTATCGGCACTGCCC GAGACTGAGGGCCAAGCGCGAGATATTGTAGACGGCAACGTGCGCCTCCTCGTCAGCAGCACCTCCTGGACTCCC GACGAGGATTTCGGCATCCTTCTCGAAGCCCTCGAGTCCTACGCCAACCCCGACGCCGACTCCCCAGCCGAGCCC CCCTCGCCAATTCTGGCCATCATCACGGGCAAAGGGCCGGAGCGAGAAGCCTATCTGGAACGTATCAAGCGCCTA CAGGATGGCGGTCGCCTGCCCGGCATCCGCGTCCTCACGGCCTGGTTGTCCACGCGTGACTACGCCTCGCTGCTT GCCGCGGCCGACCTGGGCGTGTCCCTGCACAAGTCCAGCTCGGGCGTCGACCTGCCCATGAAGGTCGTCGACATG TTCGGCGCCGGCCTTCCCGTGGCCGCCTACTCGGCTTTTGAGAGCTTCGGCGAGCTGGTGCGGGAGGGTGTCAAC GGCTGCGGCTTCGAGACGTCGGACCAGCTGGCCAAGATCCTCGCCAGGCTGTTCAGCGCCGCCGGCCAAAGGGAG CTGGCGGCCCTGAGGCAGGGGGCCATCAAAGAGGGAGCGATACGGTGGGACGACGAGTGGGATCGCGTCGTCGCG CCGCTGATGGAGTCCATTTGA |
Transcript | >Ophcf2|03931 ATGCTCGTCATCGATGATAAAGACTTGAGTAATGCCAAAAGCAGACTGCGTTCGGCCGGCTTCGAAGACTGGACT CGGCCGTACAGCTCGCTTGACCTGAGCTTCTGCAAAGAGATGCAGTTGACGGACGCGGTCGACTGCCGCGAGTTT ACAAATCTGGATTACATCTCGTCATGCTTCACTTTCCCGAAACAGATACCGGTCAAACTCATAGTCGTCCTCGTT CCGTCTTCTTACGCCCACGTAACTGTCACGCCGGCGCCAGAGCTAGTCGCTCTCCGCCAAGACGGACTCATCTGG CCGAACTCATCCACCCTTCTTCAGAGCTTCGTTGGGACACTAATGCGGGAAACCGAAGTGGACATGTGGACGGCA ATGCTCGGCTTATGGGCCCTCTTCGTGTATGGGAAATCTGAGCAGCATGACCATGTCTTGAGCGGTTGGGATGAC GCGACGGCCAGCGAATGGTTCAAGGATGTACTCAGACTTATGGAGGGCTATCACACCCACGATCCGACCGTCATG GCGGCCCTCGTCGCCTCCGTCGTCGCCGGCGCCCTCTTCACCGTCGCCCTCGGATGCGCCCTCGGACTCGTGTCC CGCCTCATCCCTTCACGCTACCGTCCCGCCCCCGACGCTTCCCAGCACGTCCAGGTGCTCGTCCTCGGCGACTTG GGCCGCAGCCCGCGCATGCAATACCACGCCCTCAGCTTGGCCAGCCACGGCTATCACGTCGACCTGGTCGCCTTC AAGGAGACGGCCAGACATCCGGGCCTCATTGGCAATGCCCGCGTCTCAATGTACGCCCTCTCGCCCCAGCCCGAG TGTATCGCTTGGGGCACCCTGCCCTTGTTCGTCAACCTCGTCGCAAAGGTCGTCCATCAGTTCTGCACCCTCTTT TACACGCTTACGTACCGCACGCCGCCCGCCCGCTGCATCGTCATTCAAAATCCGCCTTCGATTCCCACCTTTCAC GTCGCCCTCTTGGTCGCCCTGCTCCGCGGAAGCAAGCTCGTCGTCGACTGGCACAACTACGGCTACTCCATACTC GCTCAGAAGCCGCTCTATAGACCCCTGGTTCCGCTTTATCGCTGCTACGAGCTGAGCCTCGGCCGCTTCCTCGGC CATGTCAACCTCACCGTCACTGACGCCATGGCACGCCAGCTTCGTTCCCGTCTGAGGGGTCCCGTTCACACCTTG CACGACCGCCCCGCCGAGACTTTCCGGCCCGAGCCGTCGGCCGAGCGACGTTTGGCCTTCTTATCGGCACTGCCC GAGACTGAGGGCCAAGCGCGAGATATTGTAGACGGCAACGTGCGCCTCCTCGTCAGCAGCACCTCCTGGACTCCC GACGAGGATTTCGGCATCCTTCTCGAAGCCCTCGAGTCCTACGCCAACCCCGACGCCGACTCCCCAGCCGAGCCC CCCTCGCCAATTCTGGCCATCATCACGGGCAAAGGGCCGGAGCGAGAAGCCTATCTGGAACGTATCAAGCGCCTA CAGGATGGCGGTCGCCTGCCCGGCATCCGCGTCCTCACGGCCTGGTTGTCCACGCGTGACTACGCCTCGCTGCTT GCCGCGGCCGACCTGGGCGTGTCCCTGCACAAGTCCAGCTCGGGCGTCGACCTGCCCATGAAGGTCGTCGACATG TTCGGCGCCGGCCTTCCCGTGGCCGCCTACTCGGCTTTTGAGAGCTTCGGCGAGCTGGTGCGGGAGGGTGTCAAC GGCTGCGGCTTCGAGACGTCGGACCAGCTGGCCAAGATCCTCGCCAGGCTGTTCAGCGCCGCCGGCCAAAGGGAG CTGGCGGCCCTGAGGCAGGGGGCCATCAAAGAGGGAGCGATACGGTGGGACGACGAGTGGGATCGCGTCGTCGCG CCGCTGATGGAGTCCATTTGA |
Gene | >Ophcf2|03931 ATGCTCGTCATCGATGATAAAGACTTGAGTAATGCCAAAAGCAGACTGCGTTCGGCCGGCTTCGAAGACTGGACT CGGCCGTACAGCTCGCTTGACCTGAGCTTCTGCAAAGAGATGCAGTTGACGGACGCGGTCGACTGCCGCGAGTTT ACAAATCTGGATTACATCTCGTCATGCTTCACTTTCCCGAAACAGATACCGGTCAAACTCATAGTCGTCCTCGTT CCGTCTTCTTACGCCCACGTAACTGTCACGCCGGCGCCAGAGCTAGTCGCTCTCCGCCAAGACGGACTCATCTGG CCGAACTCATCCACCCTTCTTCAGAGCTTCGTTGGGACACTAATGCGGGAAACCGAAGTGGACATGTGGACGGCA ATGCTCGGCTTATGGGCCCTCTTCGTGTATGGGAAATCTGAGCAGCATGACCATGTCTTGAGCGGTTGGGATGAC GCGACGGCCAGCGAATGGTTCAAGGATGTACTCAGACTTATGGAGGGCTATCAGTCAGTGTAGGCGGACTGCCAT TGGGTGAAATCTATCTGTACCTGTACCTACCTACCAAGATAGCGGGCTCATTCAAGAGGCCGTTCTGGAAACAAC CTAGACTGCGCCACGGCCTGCGCCACACCTCTTCACCGTCGATGCTCCAACCACCGCAAAACCTCCCTCCAGCAC CCACGATCCGACCGTCATGGCGGCCCTCGTCGCCTCCGTCGTCGCCGGCGCCCTCTTCACCGTCGCCCTCGGATG CGCCCTCGGACTCGTGTCCCGCCTCATCCCTTCACGCTACCGTCCCGCCCCCGACGCTTCCCAGCACGTCCAGGT GCTCGTCCTCGGCGACTTGGGCCGCAGCCCGCGCATGCAATACCACGCCCTCAGCTTGGCCAGCCACGGCTATCA CGTCGACCTGGTCGCCTTCAAGGGTGAGTCGCCTGACTCGCTGCCGCTTTCTCGGGCCGACTGTCGACAGAGACG GCCAGACATCCGGGCCTCATTGGCAATGCCCGCGTCTCAATGTACGCCCTCTCGCCCCAGCCCGAGTGTATCGCT TGGGGCACCCTGCCCTTGTTCGTCAACCTCGTCGCAAAGGTCGTCCATCAGTTCTGCACCCTCTTTTACACGCTT ACGTACCGCACGCCGCCCGCCCGCTGCATCGTCATTCAAGTTAGGGAGCCCTGTTTCGACCTTTGACCACTCCTC TCACGCCTGCAGAATCCGCCTTCGATTCCCACCTTTCACGTCGCCCTCTTGGTCGCCCTGCTCCGCGGAAGCAAG CTCGTCGTCGACTGGCACAACTACGGCTACTCCATACTCGCTCAGAAGCCGCTCTATAGACCCCTGGTTCCGCTT TATCGCTGCTACGAGCTGAGCCTCGGCCGCTTCCTCGGCCATGTCAACCTCACCGTCACTGACGCCATGGCACGC CAGCTTCGTTCCCGTCTGAGGGGTCCCGTTCACACCTTGCACGACCGCCCCGCCGAGACTTTCCGGCCCGAGCCG TCGGCCGAGCGACGTTTGGCCTTCTTATCGGCACTGCCCGAGACTGAGGGCCAAGCGCGAGATATTGTAGACGGC AACGTGCGCCTCCTCGTCAGCAGCACCTCCTGGACTCCCGACGAGGATTTCGGCATCCTTCTCGAAGCCCTCGAG TCCTACGCCAACCCCGACGCCGACTCCCCAGCCGAGCCCCCCTCGCCAATTCTGGCCATCATCACGGGCAAAGGG CCGGAGCGAGAAGCCTATCTGGAACGTATCAAGCGCCTACAGGATGGCGGTCGCCTGCCCGGCATCCGCGTCCTC ACGGCCTGGTTGTCCACGCGTGACTACGCCTCGCTGCTTGCCGCGGCCGACCTGGGCGTGTCCCTGCACAAGTCC AGCTCGGGCGTCGACCTGCCCATGAAGGTCGTCGACATGTTCGGCGCCGGCCTTCCCGTGGCCGCCTACTCGGCT TTTGAGAGCTTCGGCGAGCTGGTGCGGGAGGGTGTCAACGGCTGCGGCTTCGAGACGTCGGACCAGCTGGCCAAG ATCCTCGCCAGGCTGTTCAGCGCCGCCGGCCAAAGGGAGCTGGCGGCCCTGAGGCAGGGGGCCATCAAAGAGGGA GCGATACGGTGGGACGACGAGTGGGATCGCGTCGTCGCGCCGCTGATGGAGTCCATTTGA |