Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03901
Gene name
Locationscaffold_04:304654..305887
Strand+
Gene length (bp)1233
Transcript length (bp)1233
Coding sequence length (bp)1233
Protein length (aa) 411

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 27 0.45

Transmembrane Domains

Domain # Start End Length
1 7 24 17
2 242 264 22
3 277 299 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 0.56 0.00 1.23
Alive In ants, during behavior modification 7.98 2.36 13.61
Dead In ants, recently dead 4.20 0.93 7.47

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.020711 yes
Dead Fungus 0.000657 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03901
MHLAQLNAGFWLVWLLLLIFSFFNSSDDPSSLFYDGSKAYQQRYSLRRAAEANDYLQRPANKVEQAGPERRLLCI
GIPSINRTSESFLGYTVATLTDTLTVEDRASIRLVVLLADRRPESQVAYRQPWLGRIADEVLLYGDEGSKGNDSV
YRSVPYGERGVGRVEKMRLDHAVLFETCRDYGSPYFALIEDDVVASPDWFAKLKRGLAYVESRSAKTNKDWIYLR
LFYSETFMGWNKEEWPSYSQNVFLIYTMVLLAAFITRSLHRKRKSAAGSARSLALIMALVLGLWIPATIALYFAA
GRISTSRINPLAWSWHPAREMPNYGCCAQGLVFPRRHLEGVLSLLRRPPFAFAGDQILEDYAGERALSKWALEPS
VLQHVGLRQSSAGDRRAEVWNFSFERQRGGSVEGR*
Coding >Ophcf2|03901
ATGCACTTGGCCCAGCTCAACGCCGGCTTCTGGCTGGTCTGGCTGCTTCTCCTCATCTTCAGCTTCTTCAACTCG
TCCGATGACCCGAGCTCGCTCTTCTACGACGGCAGCAAGGCCTACCAGCAGAGGTACTCTCTGCGGAGGGCGGCC
GAAGCCAACGACTACCTCCAACGTCCGGCGAACAAGGTCGAGCAAGCCGGGCCGGAGAGGAGGCTTCTGTGCATC
GGAATCCCGAGCATCAACCGCACATCCGAGTCCTTCCTCGGGTACACGGTGGCGACGCTGACGGATACGCTGACG
GTCGAGGACCGGGCTTCGATTCGGCTTGTTGTCTTGCTCGCCGATCGGCGTCCGGAGAGTCAGGTTGCGTACCGT
CAGCCGTGGCTGGGCCGCATAGCCGACGAGGTGCTCCTATACGGTGACGAGGGATCCAAGGGGAACGATAGCGTC
TACCGCTCCGTTCCGTACGGCGAACGCGGAGTGGGAAGGGTGGAGAAGATGCGTCTGGACCATGCGGTGCTCTTC
GAGACGTGTCGCGACTACGGATCTCCCTACTTTGCGCTCATCGAAGACGACGTCGTGGCCTCGCCCGACTGGTTC
GCCAAACTGAAAAGGGGGCTTGCCTACGTCGAGTCTCGATCCGCGAAGACGAACAAGGACTGGATATACCTCCGT
CTCTTCTACTCGGAGACGTTCATGGGCTGGAACAAGGAGGAATGGCCATCGTACTCGCAAAACGTCTTCTTGATC
TACACAATGGTCCTCCTGGCCGCCTTTATAACCCGATCCCTCCACCGGAAGCGAAAGTCAGCAGCCGGCTCAGCC
CGTTCTCTGGCCCTCATAATGGCCCTCGTTCTCGGACTCTGGATCCCCGCCACCATAGCCCTCTACTTCGCAGCA
GGACGCATCTCGACAAGCCGGATCAACCCGCTCGCCTGGAGCTGGCACCCAGCCCGCGAGATGCCCAACTACGGC
TGCTGCGCGCAGGGCCTCGTCTTCCCGCGACGGCACCTTGAAGGGGTGCTGTCTCTGCTTCGGAGGCCGCCGTTT
GCGTTTGCCGGCGATCAGATACTGGAGGATTACGCGGGGGAGCGGGCGTTGAGCAAGTGGGCGTTGGAGCCGAGT
GTGTTGCAGCATGTTGGTCTGAGGCAGTCTTCTGCTGGTGATAGGAGGGCTGAGGTGTGGAATTTTAGCTTTGAG
AGGCAGAGGGGGGGGAGTGTAGAAGGGAGGTGA
Transcript >Ophcf2|03901
ATGCACTTGGCCCAGCTCAACGCCGGCTTCTGGCTGGTCTGGCTGCTTCTCCTCATCTTCAGCTTCTTCAACTCG
TCCGATGACCCGAGCTCGCTCTTCTACGACGGCAGCAAGGCCTACCAGCAGAGGTACTCTCTGCGGAGGGCGGCC
GAAGCCAACGACTACCTCCAACGTCCGGCGAACAAGGTCGAGCAAGCCGGGCCGGAGAGGAGGCTTCTGTGCATC
GGAATCCCGAGCATCAACCGCACATCCGAGTCCTTCCTCGGGTACACGGTGGCGACGCTGACGGATACGCTGACG
GTCGAGGACCGGGCTTCGATTCGGCTTGTTGTCTTGCTCGCCGATCGGCGTCCGGAGAGTCAGGTTGCGTACCGT
CAGCCGTGGCTGGGCCGCATAGCCGACGAGGTGCTCCTATACGGTGACGAGGGATCCAAGGGGAACGATAGCGTC
TACCGCTCCGTTCCGTACGGCGAACGCGGAGTGGGAAGGGTGGAGAAGATGCGTCTGGACCATGCGGTGCTCTTC
GAGACGTGTCGCGACTACGGATCTCCCTACTTTGCGCTCATCGAAGACGACGTCGTGGCCTCGCCCGACTGGTTC
GCCAAACTGAAAAGGGGGCTTGCCTACGTCGAGTCTCGATCCGCGAAGACGAACAAGGACTGGATATACCTCCGT
CTCTTCTACTCGGAGACGTTCATGGGCTGGAACAAGGAGGAATGGCCATCGTACTCGCAAAACGTCTTCTTGATC
TACACAATGGTCCTCCTGGCCGCCTTTATAACCCGATCCCTCCACCGGAAGCGAAAGTCAGCAGCCGGCTCAGCC
CGTTCTCTGGCCCTCATAATGGCCCTCGTTCTCGGACTCTGGATCCCCGCCACCATAGCCCTCTACTTCGCAGCA
GGACGCATCTCGACAAGCCGGATCAACCCGCTCGCCTGGAGCTGGCACCCAGCCCGCGAGATGCCCAACTACGGC
TGCTGCGCGCAGGGCCTCGTCTTCCCGCGACGGCACCTTGAAGGGGTGCTGTCTCTGCTTCGGAGGCCGCCGTTT
GCGTTTGCCGGCGATCAGATACTGGAGGATTACGCGGGGGAGCGGGCGTTGAGCAAGTGGGCGTTGGAGCCGAGT
GTGTTGCAGCATGTTGGTCTGAGGCAGTCTTCTGCTGGTGATAGGAGGGCTGAGGTGTGGAATTTTAGCTTTGAG
AGGCAGAGGGGGGGGAGTGTAGAAGGGAGGTGA
Gene >Ophcf2|03901
ATGCACTTGGCCCAGCTCAACGCCGGCTTCTGGCTGGTCTGGCTGCTTCTCCTCATCTTCAGCTTCTTCAACTCG
TCCGATGACCCGAGCTCGCTCTTCTACGACGGCAGCAAGGCCTACCAGCAGAGGTACTCTCTGCGGAGGGCGGCC
GAAGCCAACGACTACCTCCAACGTCCGGCGAACAAGGTCGAGCAAGCCGGGCCGGAGAGGAGGCTTCTGTGCATC
GGAATCCCGAGCATCAACCGCACATCCGAGTCCTTCCTCGGGTACACGGTGGCGACGCTGACGGATACGCTGACG
GTCGAGGACCGGGCTTCGATTCGGCTTGTTGTCTTGCTCGCCGATCGGCGTCCGGAGAGTCAGGTTGCGTACCGT
CAGCCGTGGCTGGGCCGCATAGCCGACGAGGTGCTCCTATACGGTGACGAGGGATCCAAGGGGAACGATAGCGTC
TACCGCTCCGTTCCGTACGGCGAACGCGGAGTGGGAAGGGTGGAGAAGATGCGTCTGGACCATGCGGTGCTCTTC
GAGACGTGTCGCGACTACGGATCTCCCTACTTTGCGCTCATCGAAGACGACGTCGTGGCCTCGCCCGACTGGTTC
GCCAAACTGAAAAGGGGGCTTGCCTACGTCGAGTCTCGATCCGCGAAGACGAACAAGGACTGGATATACCTCCGT
CTCTTCTACTCGGAGACGTTCATGGGCTGGAACAAGGAGGAATGGCCATCGTACTCGCAAAACGTCTTCTTGATC
TACACAATGGTCCTCCTGGCCGCCTTTATAACCCGATCCCTCCACCGGAAGCGAAAGTCAGCAGCCGGCTCAGCC
CGTTCTCTGGCCCTCATAATGGCCCTCGTTCTCGGACTCTGGATCCCCGCCACCATAGCCCTCTACTTCGCAGCA
GGACGCATCTCGACAAGCCGGATCAACCCGCTCGCCTGGAGCTGGCACCCAGCCCGCGAGATGCCCAACTACGGC
TGCTGCGCGCAGGGCCTCGTCTTCCCGCGACGGCACCTTGAAGGGGTGCTGTCTCTGCTTCGGAGGCCGCCGTTT
GCGTTTGCCGGCGATCAGATACTGGAGGATTACGCGGGGGAGCGGGCGTTGAGCAAGTGGGCGTTGGAGCCGAGT
GTGTTGCAGCATGTTGGTCTGAGGCAGTCTTCTGCTGGTGATAGGAGGGCTGAGGTGTGGAATTTTAGCTTTGAG
AGGCAGAGGGGGGGGAGTGTAGAAGGGAGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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