Protein ID | Ophcf2|03897 |
Gene name | |
Location | scaffold_04:278216..281189 |
Strand | - |
Gene length (bp) | 2973 |
Transcript length (bp) | 2820 |
Coding sequence length (bp) | 2820 |
Protein length (aa) | 940 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04191 | PEMT | Phospholipid methyltransferase | 5.5E-21 | 222 | 321 |
PF04191 | PEMT | Phospholipid methyltransferase | 1.3E-33 | 484 | 587 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 17 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 76 | 95 | 19 |
2 | 100 | 122 | 22 |
3 | 186 | 208 | 22 |
4 | 212 | 234 | 22 |
5 | 278 | 300 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03897 MTTAIDAGQLRHRVKTAEDGGRCCSEDERSAGQQDLKGSKKTFGRTPDGTVFVVPTTHDMVSQLLDPRQPKNLTD LVVLGFLALHIVAAWLLPAGSKRTVFALIFLAWRAAYNIGIGLLLHVQSHHGRLITWARRWKLFEDPRTGDNPRP WLYGLLKRELEAKIAQDYVLEEAPIEYNTWLVFRRLVDLILMCDFVSYCLFAVVCGHVPRGEGLLMGVARWSLGL ALVGFNLWVKLDAHRVVKDFAWYWGDFFYLIDQDLTFDGVFEMAPHPMYSIGYAGYYGISMMAASYEVLFISIVA HMAQFAFLVAVENPHIEKTYNPPARRLRALSRSESDPTVLLAGPDEEDEAGRPLVSGSVHDMVGLGNVDLFRVPD LAVVTLPLYLAALTLATPSTRVWQAVFVAHALAWRVWYHLGLGIILDRQSKSKMWTRHFVKFGESAGEAWRQWKG MQHFSMIVCNASFVAACWKMYEAPDDWGRGLTLLRHVVGASLAALQLWTAFTVYGSLGEFGWFCGDFFFDHEAKL TYTSIYRFLNNPERIFGTAGVWGAALMTWSRPIFIMAIVTQILSLYYLSFIERPHMQKIYGRSLRGDAGLTKFIK RSLPPPVKGWQESMDRVLDDTTHLVEGLLETARPRFASGVKTMVRDTSALFNMAPSRLAMTRLAPGLTGLDPKLY RLSVSGLPSPSQSQRATGKESLTGRFPKAVKTMAFEYGSPLRVRWRAPASHSPRDWIGLYMVTDNRSRDATEVSS LGRWAPTSSAVYDSLTADSSISEAEHAVDEDTVEGELLFEGDKLWWTQGVYEFRYHHDGRHTVLAVSEPFETSMA PFSDDEDAAPSASDIASAILPVIQRCLDRDPDIAPSTVDEPFGAHVERDAKYARRIVYAIREMFGVEFAPAVVLA DRNARKLGWRICNAKEVLAPYSLSQSRGTTTPATREPLT* |
Coding | >Ophcf2|03897 ATGACGACTGCCATCGACGCCGGCCAGCTGCGGCACCGGGTCAAGACGGCCGAAGATGGGGGACGATGCTGCTCG GAGGACGAACGGAGTGCCGGTCAGCAAGACCTCAAGGGCAGCAAGAAGACGTTTGGTCGGACCCCGGATGGAACA GTCTTCGTCGTCCCCACCACTCATGACATGGTGTCGCAGCTGCTCGATCCCCGTCAACCCAAGAACCTGACGGAT CTCGTCGTCCTCGGCTTCCTGGCGCTGCACATTGTAGCCGCCTGGCTGCTACCGGCCGGAAGCAAGAGGACGGTC TTTGCCCTCATCTTTCTCGCCTGGAGGGCGGCCTACAACATCGGTATCGGCCTCCTGCTGCACGTACAGTCCCAT CATGGCCGGCTCATCACCTGGGCGCGACGATGGAAGCTGTTCGAGGACCCGCGGACGGGCGACAACCCGAGGCCG TGGCTGTACGGCTTGCTCAAGCGAGAACTCGAGGCCAAGATCGCCCAGGACTACGTGCTGGAAGAGGCGCCAATC GAGTACAACACGTGGCTCGTCTTCCGCAGGCTGGTGGACCTGATCCTCATGTGCGACTTCGTGTCGTACTGCCTG TTCGCCGTCGTGTGCGGCCACGTGCCTCGGGGCGAGGGACTGTTGATGGGCGTCGCCCGCTGGTCGCTGGGACTG GCACTGGTAGGCTTCAACCTCTGGGTCAAGCTGGACGCGCACCGGGTTGTCAAGGACTTTGCCTGGTATTGGGGC GACTTCTTCTACCTCATCGACCAGGACTTGACCTTTGACGGAGTCTTCGAGATGGCGCCCCATCCCATGTACTCG ATCGGTTACGCTGGCTACTATGGCATCTCGATGATGGCCGCCAGCTACGAGGTGCTCTTCATCTCCATCGTCGCC CACATGGCCCAGTTCGCCTTTCTCGTGGCGGTCGAGAACCCGCACATCGAGAAGACGTACAACCCTCCGGCCCGG AGGCTGAGGGCCCTGTCCCGTTCCGAGAGCGATCCGACGGTGCTGCTGGCGGGCCCGGACGAGGAGGACGAAGCA GGCCGGCCGCTCGTGTCGGGATCGGTACACGACATGGTCGGGCTCGGCAACGTCGACCTCTTCCGGGTGCCGGAC CTCGCCGTGGTGACGCTCCCGCTGTACCTCGCGGCCTTGACGCTGGCCACGCCCTCGACGCGAGTCTGGCAGGCC GTCTTCGTCGCCCACGCGTTGGCCTGGCGCGTCTGGTACCATCTGGGGCTGGGCATCATACTCGACCGTCAGTCC AAGAGCAAGATGTGGACGCGTCACTTTGTCAAGTTTGGCGAGAGCGCCGGCGAGGCCTGGCGTCAGTGGAAGGGC ATGCAGCACTTCAGCATGATCGTCTGCAACGCCTCCTTCGTGGCCGCCTGCTGGAAGATGTACGAGGCCCCCGAC GACTGGGGACGAGGCCTGACGCTGCTGCGGCACGTCGTCGGTGCCTCGTTGGCGGCTCTGCAGCTGTGGACCGCC TTCACGGTCTACGGCTCCCTGGGCGAGTTCGGCTGGTTCTGCGGCGACTTCTTCTTCGATCACGAGGCCAAGCTG ACTTACACGTCCATCTATCGCTTCCTCAACAATCCCGAGCGAATCTTCGGCACCGCCGGCGTCTGGGGAGCGGCC CTGATGACGTGGAGTCGTCCCATCTTCATCATGGCCATCGTCACTCAGATCCTCTCGCTCTACTATCTATCCTTT ATCGAACGGCCGCACATGCAAAAGATATACGGCCGTAGCCTCCGCGGCGACGCCGGTCTGACCAAGTTCATCAAG CGGTCTCTTCCACCGCCCGTCAAGGGCTGGCAGGAGAGCATGGATCGCGTCCTCGACGATACGACGCATCTGGTC GAAGGACTTCTCGAGACGGCGCGTCCGAGATTCGCCTCGGGCGTCAAGACCATGGTCCGCGACACGTCGGCCCTC TTCAACATGGCGCCCTCGCGTCTCGCCATGACGCGTCTCGCCCCCGGTCTGACGGGCCTCGACCCCAAGCTCTAC CGCCTTTCTGTCTCGGGACTCCCTTCGCCTTCGCAGTCTCAGCGTGCCACGGGAAAGGAGAGCCTGACGGGAAGG TTTCCCAAGGCGGTCAAGACGATGGCTTTCGAGTACGGATCTCCGCTGCGAGTACGATGGCGAGCACCCGCCTCG CACAGCCCCCGAGACTGGATAGGTCTCTACATGGTGACGGACAACCGATCCCGCGACGCGACAGAGGTCTCTTCT CTCGGCCGCTGGGCGCCGACGAGCTCGGCCGTCTACGACTCCCTCACGGCCGACAGCAGCATCTCCGAGGCCGAA CACGCCGTGGACGAAGACACGGTAGAAGGCGAGCTGCTGTTTGAGGGCGACAAGCTGTGGTGGACACAGGGCGTC TACGAATTCCGCTATCATCACGACGGCCGCCATACCGTCCTCGCCGTCTCGGAACCCTTCGAGACGTCGATGGCC CCCTTTTCGGACGACGAAGACGCCGCTCCCTCGGCGTCGGACATCGCGTCGGCCATCCTCCCCGTCATCCAGCGG TGTCTAGACCGCGATCCGGACATTGCGCCCTCGACCGTCGACGAGCCTTTTGGCGCACACGTCGAACGCGATGCC AAGTACGCGAGACGCATCGTCTACGCCATCCGAGAGATGTTCGGCGTCGAGTTCGCGCCCGCGGTCGTGCTGGCC GATAGGAATGCCAGGAAACTCGGTTGGCGCATCTGTAATGCCAAGGAGGTTCTCGCCCCGTATAGCCTCTCTCAG TCGAGGGGGACGACGACTCCCGCCACGCGCGAACCCCTGACTTGA |
Transcript | >Ophcf2|03897 ATGACGACTGCCATCGACGCCGGCCAGCTGCGGCACCGGGTCAAGACGGCCGAAGATGGGGGACGATGCTGCTCG GAGGACGAACGGAGTGCCGGTCAGCAAGACCTCAAGGGCAGCAAGAAGACGTTTGGTCGGACCCCGGATGGAACA GTCTTCGTCGTCCCCACCACTCATGACATGGTGTCGCAGCTGCTCGATCCCCGTCAACCCAAGAACCTGACGGAT CTCGTCGTCCTCGGCTTCCTGGCGCTGCACATTGTAGCCGCCTGGCTGCTACCGGCCGGAAGCAAGAGGACGGTC TTTGCCCTCATCTTTCTCGCCTGGAGGGCGGCCTACAACATCGGTATCGGCCTCCTGCTGCACGTACAGTCCCAT CATGGCCGGCTCATCACCTGGGCGCGACGATGGAAGCTGTTCGAGGACCCGCGGACGGGCGACAACCCGAGGCCG TGGCTGTACGGCTTGCTCAAGCGAGAACTCGAGGCCAAGATCGCCCAGGACTACGTGCTGGAAGAGGCGCCAATC GAGTACAACACGTGGCTCGTCTTCCGCAGGCTGGTGGACCTGATCCTCATGTGCGACTTCGTGTCGTACTGCCTG TTCGCCGTCGTGTGCGGCCACGTGCCTCGGGGCGAGGGACTGTTGATGGGCGTCGCCCGCTGGTCGCTGGGACTG GCACTGGTAGGCTTCAACCTCTGGGTCAAGCTGGACGCGCACCGGGTTGTCAAGGACTTTGCCTGGTATTGGGGC GACTTCTTCTACCTCATCGACCAGGACTTGACCTTTGACGGAGTCTTCGAGATGGCGCCCCATCCCATGTACTCG ATCGGTTACGCTGGCTACTATGGCATCTCGATGATGGCCGCCAGCTACGAGGTGCTCTTCATCTCCATCGTCGCC CACATGGCCCAGTTCGCCTTTCTCGTGGCGGTCGAGAACCCGCACATCGAGAAGACGTACAACCCTCCGGCCCGG AGGCTGAGGGCCCTGTCCCGTTCCGAGAGCGATCCGACGGTGCTGCTGGCGGGCCCGGACGAGGAGGACGAAGCA GGCCGGCCGCTCGTGTCGGGATCGGTACACGACATGGTCGGGCTCGGCAACGTCGACCTCTTCCGGGTGCCGGAC CTCGCCGTGGTGACGCTCCCGCTGTACCTCGCGGCCTTGACGCTGGCCACGCCCTCGACGCGAGTCTGGCAGGCC GTCTTCGTCGCCCACGCGTTGGCCTGGCGCGTCTGGTACCATCTGGGGCTGGGCATCATACTCGACCGTCAGTCC AAGAGCAAGATGTGGACGCGTCACTTTGTCAAGTTTGGCGAGAGCGCCGGCGAGGCCTGGCGTCAGTGGAAGGGC ATGCAGCACTTCAGCATGATCGTCTGCAACGCCTCCTTCGTGGCCGCCTGCTGGAAGATGTACGAGGCCCCCGAC GACTGGGGACGAGGCCTGACGCTGCTGCGGCACGTCGTCGGTGCCTCGTTGGCGGCTCTGCAGCTGTGGACCGCC TTCACGGTCTACGGCTCCCTGGGCGAGTTCGGCTGGTTCTGCGGCGACTTCTTCTTCGATCACGAGGCCAAGCTG ACTTACACGTCCATCTATCGCTTCCTCAACAATCCCGAGCGAATCTTCGGCACCGCCGGCGTCTGGGGAGCGGCC CTGATGACGTGGAGTCGTCCCATCTTCATCATGGCCATCGTCACTCAGATCCTCTCGCTCTACTATCTATCCTTT ATCGAACGGCCGCACATGCAAAAGATATACGGCCGTAGCCTCCGCGGCGACGCCGGTCTGACCAAGTTCATCAAG CGGTCTCTTCCACCGCCCGTCAAGGGCTGGCAGGAGAGCATGGATCGCGTCCTCGACGATACGACGCATCTGGTC GAAGGACTTCTCGAGACGGCGCGTCCGAGATTCGCCTCGGGCGTCAAGACCATGGTCCGCGACACGTCGGCCCTC TTCAACATGGCGCCCTCGCGTCTCGCCATGACGCGTCTCGCCCCCGGTCTGACGGGCCTCGACCCCAAGCTCTAC CGCCTTTCTGTCTCGGGACTCCCTTCGCCTTCGCAGTCTCAGCGTGCCACGGGAAAGGAGAGCCTGACGGGAAGG TTTCCCAAGGCGGTCAAGACGATGGCTTTCGAGTACGGATCTCCGCTGCGAGTACGATGGCGAGCACCCGCCTCG CACAGCCCCCGAGACTGGATAGGTCTCTACATGGTGACGGACAACCGATCCCGCGACGCGACAGAGGTCTCTTCT CTCGGCCGCTGGGCGCCGACGAGCTCGGCCGTCTACGACTCCCTCACGGCCGACAGCAGCATCTCCGAGGCCGAA CACGCCGTGGACGAAGACACGGTAGAAGGCGAGCTGCTGTTTGAGGGCGACAAGCTGTGGTGGACACAGGGCGTC TACGAATTCCGCTATCATCACGACGGCCGCCATACCGTCCTCGCCGTCTCGGAACCCTTCGAGACGTCGATGGCC CCCTTTTCGGACGACGAAGACGCCGCTCCCTCGGCGTCGGACATCGCGTCGGCCATCCTCCCCGTCATCCAGCGG TGTCTAGACCGCGATCCGGACATTGCGCCCTCGACCGTCGACGAGCCTTTTGGCGCACACGTCGAACGCGATGCC AAGTACGCGAGACGCATCGTCTACGCCATCCGAGAGATGTTCGGCGTCGAGTTCGCGCCCGCGGTCGTGCTGGCC GATAGGAATGCCAGGAAACTCGGTTGGCGCATCTGTAATGCCAAGGAGGTTCTCGCCCCGTATAGCCTCTCTCAG TCGAGGGGGACGACGACTCCCGCCACGCGCGAACCCCTGACTTGA |
Gene | >Ophcf2|03897 ATGACGACTGCCATCGACGCCGGCCAGCTGCGGCACCGGGTCAAGACGGCCGAAGATGGGGGACGATGCTGCTCG GAGGACGAACGGAGTGCCGGTCAGCAAGACCTCAAGGGCAGCAAGAAGACGTTTGGTCGGACCCCGGATGGAACA GGTGAGTCTACAGCCAGAGACAGCGACAGAGACAGCGAGAGAATCAATTGATCCAGAAGGGGCTGACCCTGGGAC TCCTGGCAGTCTTCGTCGTCCCCACCACTCATGACATGGTGTCGCAGCTGCTCGATCCCCGTCAACCCAAGAACC TGACGGATCTCGTCGTCCTCGGCTTCCTGGCGCTGCACATTGTAGCCGCCTGGCTGCTACCGGCCGGAAGCAAGA GGACGGTCTTTGCCCTCATCTTTCTCGCCTGGAGGGCGGCCTACAACATCGGTATCGGCCTCCTGCTGCACGTAC AGTCCCATCATGGCCGGCTCATCACCTGGGCGCGACGATGGAAGCTGTTCGAGGACCCGCGGACGGGCGACAACC CGAGGCCGTGGCTGTACGGCTTGCTCAAGCGAGAACTCGAGGCCAAGATCGCCCAGGACTACGTGCTGGAAGAGG CGCCAATCGAGTACAACACGTGGCTCGTCTTCCGCAGGCTGGTGGACCTGATCCTCATGTGCGACTTCGTGTCGT ACTGCCTGTTCGCCGTCGTGTGCGGCCACGTGCCTCGGGGCGAGGGACTGTTGATGGGCGTCGCCCGCTGGTCGC TGGGACTGGCACTGGTAGGCTTCAACCTCTGGGTCAAGCTGGACGCGCACCGGGTTGTCAAGGACTTTGCCTGGT ATTGGGGCGACTTCTTCTACCTCATCGACCAGGACTTGACCTTTGACGGAGTCTTCGAGATGGCGCCCCATCCCA TGTACTCGATCGGTTACGCTGGCTACTATGGCATCTCGATGATGGCCGCCAGCTACGAGGTGCTCTTCATCTCCA TCGTCGCCCACATGGCCCAGTTCGCCTTTCTCGTGGCGGTCGAGAACCCGCACATCGAGAAGACGTACAACCCTC CGGCCCGGAGGCTGAGGGCCCTGTCCCGTTCCGAGAGCGATCCGACGGTGCTGCTGGCGGGCCCGGACGAGGAGG ACGAAGCAGGCCGGCCGCTCGTGTCGGGATCGGTACACGACATGGTCGGGCTCGGCAACGTCGACCTCTTCCGGG TGCCGGACCTCGCCGTGGTGACGCTCCCGCTGTACCTCGCGGCCTTGACGCTGGCCACGCCCTCGACGCGAGTCT GGCAGGCCGTCTTCGTCGCCCACGCGTTGGCCTGGCGCGTCTGGTACCATCTGGGGCTGGGCATCATACTCGACC GTCAGTCCAAGAGCAAGATGTGGACGCGTCACTTTGTCAAGTTTGGCGAGAGCGCCGGCGAGGCCTGGCGTCAGT GGAAGGGCATGCAGCACTTCAGCATGATCGTCTGCAACGCCTCCTTCGTGGCCGCCTGCTGGAAGATGTACGAGG CCCCCGACGACTGGGGACGAGGCCTGACGCTGCTGCGGCACGTCGTCGGTGCCTCGTTGGCGGCTCTGCAGCTGT GGACCGCCTTCACGGTCTACGGCTCCCTGGGCGAGTTCGGCTGGTTCTGCGGCGACTTCTTCTTCGATCACGAGG CCAAGCTGACTTACACGTCCATCTATCGCTTCCTCAACAATCCCGAGCGAATCTTCGGCACCGCCGGCGTCTGGG GAGCGGCCCTGATGACGTGGAGTCGTCCCATCTTCATCATGGCCATCGTCACTCAGATCCTCTCGCTCTACTATC TATCCTTTATCGAACGGCCGCACATGCAAAAGATATACGGCCGTAGCCTCCGCGGCGACGCCGGTCTGACCAAGT TCATCAAGCGGTCTCTTCCACCGCCCGTCAAGGGCTGGCAGGAGAGCATGGATCGCGTCCTCGACGATACGACGC ATCTGGTCGAAGGACTTCTCGAGACGGCGCGTCCGAGATTCGCCTCGGGCGTCAAGACCATGGTCCGCGACACGT CGGCCCTCTTCAACATGGCGCCCTCGCGTCTCGCCATGACGCGTCTCGCCCCCGGTCTGACGGGCCTCGACCCCA AGCTCTACCGCCTTTCTGTCTCGGGACTCCCTTCGCCTTCGCAGTCTCAGCGTGCCACGGGAAAGGAGAGCCTGA CGGGAAGGTTTCCCAAGGCGGTCAAGACGATGGCTTTCGAGTACGGATCTCCGCTGCGAGTACGATGGCGAGCAC CCGCCTCGCACAGCCCCCGAGACTGGATAGGTCTCTACATGGTGACGGACAACCGATCCCGCGACGCGACAGAGG TCTCTTCTCTCGGCCGCTGGGCGCCGACGAGCTCGGCCGTCTACGACTCCCTCACGGCCGACAGCAGCATCTCCG AGGCCGAACACGCCGTGGACGAAGACACGGTAGAAGGCGAGCTGCTGTTTGAGGGCGACAAGCTGTGGTGGACAC AGGGCGTCTACGAATTCCGCTATCATCACGACGGCCGCCATACCGTCCTCGCCGTCTCGGAACCCTTCGAGACGT CGATGGCCCCCTTTTCGGACGACGAAGACGCCGCTCCCTCGGCGTCGGACATCGCGTCGGCCATCCTCCCCGTCA TCCAGCGGTGTCTAGACCGCGATCCGGACATTGCGCCCTCGACCGTCGACGAGCCTTTTGGCGCACACGTCGAAC GCGATGCCAAGTACGCGAGACGCATCGTCTACGCCATCCGAGAGATGTTCGGCGTCGAGTTCGCGCCCGCGGTCG TGCTGGCCGATAGGAATGCCAGGAAACTCGGTTGGCGCATCTGTAATGCCAAGGAGGTTCTCGTGAGTTTGTTTC CCGATGTCATCCGACTCGTTGCTCGTCGTGCTTACTCGGACCTTGTCGTCATCTCAGGCCCCGTATAGCCTCTCT CAGTCGAGGGGGACGACGACTCCCGCCACGCGCGAACCCCTGACTTGA |