© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03877 |
| Gene name | |
| Location | scaffold_04:215991..217648 |
| Strand | + |
| Gene length (bp) | 1657 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06027 | SLC35F | Solute carrier family 35 | 1.3E-92 | 171 | 463 |
| PF08627 | CRT-like | CRT-like, chloroquine-resistance transporter-like | 2.1E-06 | 232 | 353 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 21 | 17 |
| 2 | 170 | 192 | 22 |
| 3 | 202 | 224 | 22 |
| 4 | 237 | 259 | 22 |
| 5 | 264 | 286 | 22 |
| 6 | 295 | 314 | 19 |
| 7 | 329 | 351 | 22 |
| 8 | 358 | 376 | 18 |
| 9 | 391 | 413 | 22 |
| 10 | 420 | 442 | 22 |
| 11 | 447 | 469 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03877 MAIIVVVVVVVVVVIIIVNSSPKSSTLVCGIISPIRLHFNIPLLPPSIVSPPDPTCPALDNQPASDLKSLRLPCS QKTLSPSSNDNVPSGFRREASHDDNHHVESRLPRTTSTEDAAPSSPPRAPSPSFEPPRDADAQAAAAAAAAAAGI ALLESRRPKRWYGYVTSADFCLVAFLGQVLALCITATNTFTTLLARADFNAPALQTCFNYAFIAAVFTTVFLVRD GPHAWFRALRSRGWRYLLLAALDVEANYFTVLAYQHTTILSAQLINFWSIVCVVAVSALVLKVRYRPQQLLGILV CCAGMGLLIATDHLGQRNGGPANDALRGDLFALLGATLYGLSNVFEEWLVSKDAAHHVLAFLGLFGLIINGVQAA IFDRATLAKTVWSGPIAGWLVGYTACLSLFYSLAPLVLRMASAAFFDVSLLTANFWGVIIGVRLFGYGVHFLYPL AFLCIVAGLVLYFVAGSSLGDAQKPWLARDQHDGVAGLGTAKLRAINAARGPPAGVWERVRRGFGVE* |
| Coding | >Ophcf2|03877 ATGGCCATCATTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCATCATCATCGTAAACAGCTCTCCCAAGTCGTCA ACTCTTGTATGTGGTATCATATCCCCCATCAGACTTCACTTCAACATCCCCCTCCTCCCTCCCAGCATCGTCAGC CCTCCGGATCCCACATGTCCAGCTCTAGATAACCAGCCGGCAAGCGACTTGAAGTCTTTGCGCTTGCCCTGCTCT CAAAAGACTCTCTCTCCCTCCTCCAACGATAATGTCCCTTCCGGCTTCCGACGCGAAGCAAGCCACGACGATAAC CACCACGTCGAATCTCGTCTCCCCCGGACGACATCGACAGAAGATGCCGCCCCGAGCTCCCCGCCCCGAGCTCCC AGCCCCTCTTTCGAACCCCCCCGCGATGCAGACGCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAATC GCCCTCTTGGAAAGCAGACGGCCCAAACGATGGTACGGCTACGTGACCTCTGCCGACTTTTGCCTCGTCGCCTTC CTCGGTCAGGTCCTCGCGCTATGCATCACGGCGACGAACACTTTCACCACGCTACTCGCACGCGCGGACTTCAAC GCCCCCGCTTTGCAGACGTGCTTCAACTACGCCTTCATCGCCGCCGTCTTCACCACCGTCTTCCTCGTCCGTGAC GGACCGCACGCCTGGTTCCGAGCCCTACGCTCACGTGGATGGCGATACTTGTTGCTCGCAGCCCTCGACGTCGAG GCGAATTACTTCACCGTCCTCGCCTACCAGCACACGACGATCCTATCGGCGCAGCTCATCAACTTCTGGTCCATC GTCTGCGTAGTCGCCGTCTCGGCCCTCGTCCTCAAGGTCCGCTACCGCCCGCAGCAACTCCTAGGCATCCTCGTC TGCTGCGCCGGAATGGGCCTCCTCATCGCTACCGATCACCTAGGCCAGCGCAACGGCGGTCCCGCCAACGACGCC CTCCGCGGCGACCTCTTCGCCCTCCTGGGCGCCACCCTCTACGGCCTCAGCAACGTCTTCGAGGAATGGCTCGTC AGCAAGGACGCAGCCCACCACGTACTCGCCTTCCTCGGCCTCTTCGGCCTCATCATCAACGGCGTCCAAGCCGCC ATCTTCGACCGAGCCACCCTGGCCAAGACGGTCTGGTCCGGTCCGATAGCCGGCTGGTTAGTCGGCTACACGGCC TGCCTCTCGCTCTTCTACTCGCTGGCGCCGCTGGTGCTGCGAATGGCCAGCGCCGCCTTCTTCGACGTGTCTCTC CTGACGGCCAATTTCTGGGGCGTCATCATCGGCGTGCGGCTGTTCGGCTACGGCGTGCACTTCCTATACCCGCTG GCTTTCCTGTGCATCGTCGCCGGCCTCGTCTTGTACTTTGTGGCGGGGAGCTCGCTGGGTGACGCGCAGAAGCCG TGGCTCGCGCGCGATCAGCACGATGGGGTCGCCGGTTTGGGGACGGCCAAGTTGAGGGCCATCAACGCGGCGAGG GGGCCGCCTGCTGGGGTTTGGGAGCGGGTGAGGAGGGGGTTTGGGGTTGAGTGA |
| Transcript | >Ophcf2|03877 ATGGCCATCATTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCATCATCATCGTAAACAGCTCTCCCAAGTCGTCA ACTCTTGTATGTGGTATCATATCCCCCATCAGACTTCACTTCAACATCCCCCTCCTCCCTCCCAGCATCGTCAGC CCTCCGGATCCCACATGTCCAGCTCTAGATAACCAGCCGGCAAGCGACTTGAAGTCTTTGCGCTTGCCCTGCTCT CAAAAGACTCTCTCTCCCTCCTCCAACGATAATGTCCCTTCCGGCTTCCGACGCGAAGCAAGCCACGACGATAAC CACCACGTCGAATCTCGTCTCCCCCGGACGACATCGACAGAAGATGCCGCCCCGAGCTCCCCGCCCCGAGCTCCC AGCCCCTCTTTCGAACCCCCCCGCGATGCAGACGCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAATC GCCCTCTTGGAAAGCAGACGGCCCAAACGATGGTACGGCTACGTGACCTCTGCCGACTTTTGCCTCGTCGCCTTC CTCGGTCAGGTCCTCGCGCTATGCATCACGGCGACGAACACTTTCACCACGCTACTCGCACGCGCGGACTTCAAC GCCCCCGCTTTGCAGACGTGCTTCAACTACGCCTTCATCGCCGCCGTCTTCACCACCGTCTTCCTCGTCCGTGAC GGACCGCACGCCTGGTTCCGAGCCCTACGCTCACGTGGATGGCGATACTTGTTGCTCGCAGCCCTCGACGTCGAG GCGAATTACTTCACCGTCCTCGCCTACCAGCACACGACGATCCTATCGGCGCAGCTCATCAACTTCTGGTCCATC GTCTGCGTAGTCGCCGTCTCGGCCCTCGTCCTCAAGGTCCGCTACCGCCCGCAGCAACTCCTAGGCATCCTCGTC TGCTGCGCCGGAATGGGCCTCCTCATCGCTACCGATCACCTAGGCCAGCGCAACGGCGGTCCCGCCAACGACGCC CTCCGCGGCGACCTCTTCGCCCTCCTGGGCGCCACCCTCTACGGCCTCAGCAACGTCTTCGAGGAATGGCTCGTC AGCAAGGACGCAGCCCACCACGTACTCGCCTTCCTCGGCCTCTTCGGCCTCATCATCAACGGCGTCCAAGCCGCC ATCTTCGACCGAGCCACCCTGGCCAAGACGGTCTGGTCCGGTCCGATAGCCGGCTGGTTAGTCGGCTACACGGCC TGCCTCTCGCTCTTCTACTCGCTGGCGCCGCTGGTGCTGCGAATGGCCAGCGCCGCCTTCTTCGACGTGTCTCTC CTGACGGCCAATTTCTGGGGCGTCATCATCGGCGTGCGGCTGTTCGGCTACGGCGTGCACTTCCTATACCCGCTG GCTTTCCTGTGCATCGTCGCCGGCCTCGTCTTGTACTTTGTGGCGGGGAGCTCGCTGGGTGACGCGCAGAAGCCG TGGCTCGCGCGCGATCAGCACGATGGGGTCGCCGGTTTGGGGACGGCCAAGTTGAGGGCCATCAACGCGGCGAGG GGGCCGCCTGCTGGGGTTTGGGAGCGGGTGAGGAGGGGGTTTGGGGTTGAGTGA |
| Gene | >Ophcf2|03877 ATGGCCATCATTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCATCATCATCGTAAACAGCTCTCCCAAGTCGTCA ACTCTTGTATGTGGTATCATGTATGTATGCATCTAACCCCCCCCCACCTACGGGTACTCAGATCCCTCCTCCCCA CCACCACACAATCCATCATGATGCCATCCGCTGACTCAGCAAACCCAGATCCCCCATCAGACTTCACTTCAACAT CCCCCTCCTCCCTCCCAGCATCGTCAGCCCTCCGGATCCCACATGTCCAGCTCTAGATAACCAGCCGGCAAGCGA CTTGAAGTCTTTGCGCTTGCCCTGCTCTCAAAAGACTCTCTCTCCCTCCTCCAACGATAATGTCCCTTCCGGCTT CCGACGCGAAGCAAGCCACGACGATAACCACCACGTCGAATCTCGTCTCCCCCGGACGACATCGACAGAAGATGC CGCCCCGAGCTCCCCGCCCCGAGCTCCCAGCCCCTCTTTCGAACCCCCCCGCGATGCAGACGCCCAAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCGGGAATCGCCCTCTTGGAAAGCAGACGGCCCAAACGATGGTACGGCTACGTGAC CTCTGCCGACTTTTGCCTCGTCGCCTTCCTCGGTCAGGTCCTCGCGCTATGCATCACGGCGACGAACACTTTCAC CACGCTACTCGCACGCGCGGACTTCAACGCCCCCGCTTTGCAGACGTGCTTCAACTACGCCTTCATCGCCGCCGT CTTCACCACCGTCTTCCTCGTCCGTGACGGACCGCACGCCTGGTTCCGAGCCCTACGCTCACGTGGATGGCGATA CTTGTTGCTCGCAGCCCTCGACGTCGAGGCGAATTACTTCACCGTCCTCGCCTACCAGCACACGACGATCCTATC GGCGCAGCTCATCAACTTCTGGTCCATCGTCTGCGTAGTCGCCGTCTCGGCCCTCGTCCTCAAGGTCCGCTACCG CCCGCAGCAACTCCTAGGCATCCTCGTCTGCTGCGCCGGAATGGGCCTCCTCATCGCTACCGATCACCTAGGCCA GCGCAACGGCGGTCCCGCCAACGACGCCCTCCGCGGCGACCTCTTCGCCCTCCTGGGCGCCACCCTCTACGGCCT CAGCAACGTCTTCGAGGAATGGCTCGTCAGCAAGGACGCAGCCCACCACGTACTCGCCTTCCTCGGCCTCTTCGG CCTCATCATCAACGGCGTCCAAGCCGCCATCTTCGACCGAGCCACCCTGGCCAAGACGGTCTGGTCCGGTCCGAT AGCCGGCTGGTTAGTCGGCTACACGGCCTGCCTCTCGCTCTTCTACTCGCTGGCGCCGCTGGTGCTGCGAATGGC CAGCGCCGCCTTCTTCGACGTGTCTCTCCTGACGGCCAATTTCTGGGGCGTCATCATCGGCGTGCGGCTGTTCGG CTACGGCGTGCACTTCCTATACCCGCTGGCTTTCCTGTGCATCGTCGCCGGCCTCGTCTTGTACTTTGTGGCGGG GAGCTCGCTGGGTGACGCGCAGAAGCCGTGGCTCGCGCGCGATCAGCACGATGGGGTCGCCGGTTTGGGGACGGC CAAGTTGAGGGCCATCAACGCGGCGAGGGGGCCGCCTGCTGGGGTTTGGGAGCGGGTGAGGAGGGGGTTTGGGGT TGAGTGA |