Protein ID | Ophcf2|03859 |
Gene name | |
Location | scaffold_04:140225..142575 |
Strand | - |
Gene length (bp) | 2350 |
Transcript length (bp) | 2148 |
Coding sequence length (bp) | 2148 |
Protein length (aa) | 716 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1436 | 0.0633 | 0.0389 | 0.6874 | 0.0296 | 0.004 | 0.193 | 0.51 | 0.3906 | 0.013 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 36 | 58 | 22 |
2 | 79 | 101 | 22 |
3 | 111 | 133 | 22 |
4 | 560 | 582 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 79 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03859 MSTSAHHRVHLGSWTDWSRGPVMGVTLTLDRTRASLLIAFTAFFIGIVASCFWRILVFFIHRLYSTPNPRDALHH QRQVLLRNSVTAPSSLLAFSQLFWTWRREEGTVWRTLPVIVCAVASIVIFTVASGFSSQISSAVGNAALLDGSRC GIIAGAAQAGRLEDLGVLLPYGIRRITDSANYAQQCYGAPGAGLLDCATFIKRSLPYSTDDQAPCPFQGGICRTN TSNLLFDTGYLNSHEHLGVNSSPDRRILFKTTLHCAPLQTAGYSRDIQTPFRNYTRYYYGRRTHDTSRDHDGNYT LQVRDLDDQYDHFKHGFDNMDGHWSPTLQSYVAFVKNGRLLPTGSEFVPIPQLSRSDGDLMIFFLSGNGAVFMRP TPDPWYRGTVPGQNVSMDHSSDSLSFQTFEPEEAASPMACLQRHQFCDGYGHCGPLASYLDALAGASSVFNSTVL QSPQDGEEPATPFATFRRALGSALGTIDLMVSSFQGNALLSQQVSSSGLRGPLPDNQWQLDVTYWWTTMLAAIQA SFVQMAAGTTDAELEPYVVHLNSSYKILASAFTSFSVFGLYFVYIFGFVIIIVSVALEPLLSFLRERRDPKLYTH LERQSDQVLQLQRAAYQGIGSGTWMGFAGAVPRTERVEALADLSGHYQEAGHGEKTDGVAEECPVLSASTNTEGE DGRQFRANGFDERREEESGSSSSMKTVAVPPTISRRHSTS* |
Coding | >Ophcf2|03859 ATGAGCACCTCGGCCCATCATCGCGTTCATCTTGGATCATGGACCGACTGGTCGCGCGGGCCCGTCATGGGCGTA ACTCTCACCCTCGATCGAACACGAGCATCGCTGCTCATAGCCTTCACAGCCTTCTTCATCGGCATCGTCGCCTCC TGCTTCTGGCGCATCCTCGTCTTCTTCATCCACCGTCTCTACTCGACGCCTAATCCCCGCGATGCCCTCCATCAC CAGCGCCAAGTCCTCCTCCGAAACTCCGTCACCGCTCCCTCCAGCCTCCTAGCCTTTTCGCAGCTCTTCTGGACC TGGCGCCGAGAAGAGGGCACCGTGTGGAGGACGCTTCCCGTAATAGTCTGCGCCGTGGCCTCGATTGTCATCTTC ACCGTCGCCAGCGGCTTCTCGTCTCAGATATCGTCGGCGGTTGGAAACGCTGCCTTGCTGGATGGCTCGCGCTGT GGAATTATTGCGGGCGCGGCTCAGGCAGGTCGCTTGGAGGATCTCGGTGTTCTTCTTCCTTATGGGATTCGTCGC ATCACGGACTCGGCCAACTATGCGCAGCAATGTTACGGGGCTCCGGGCGCTGGTTTGTTGGACTGCGCGACCTTT ATCAAGCGCAGTCTGCCGTATAGCACTGATGATCAGGCTCCGTGTCCCTTTCAGGGCGGTATCTGCCGGACCAAC ACATCCAACCTGCTGTTTGATACCGGATATCTGAACAGTCATGAGCATCTAGGCGTCAACTCCTCTCCCGATCGT CGAATTCTATTCAAGACTACCTTGCACTGCGCGCCCCTGCAGACGGCTGGATACTCCAGAGACATCCAAACGCCT TTCCGCAACTACACTCGATACTACTACGGCCGGAGAACGCACGACACATCTCGTGACCACGATGGGAACTACACG CTGCAAGTCCGCGACCTTGATGACCAGTACGATCACTTCAAGCACGGCTTCGACAATATGGACGGTCATTGGAGC CCGACTCTGCAGTCGTACGTCGCCTTCGTCAAGAACGGTCGCCTCCTACCCACGGGCTCAGAGTTCGTGCCCATC CCCCAACTCTCTCGCTCCGACGGAGACCTCATGATCTTCTTCCTCTCCGGCAACGGCGCCGTATTCATGAGACCG ACACCGGATCCCTGGTACCGCGGAACCGTCCCCGGCCAAAACGTATCCATGGACCACTCCTCAGACTCCCTCTCA TTCCAAACATTCGAGCCCGAAGAGGCAGCTTCACCCATGGCCTGCCTCCAACGACACCAATTCTGCGACGGTTAC GGTCACTGCGGACCGTTGGCCAGTTACCTTGATGCCCTCGCCGGCGCCAGCAGCGTCTTCAACTCGACTGTTCTC CAGAGTCCTCAGGATGGCGAGGAGCCGGCTACGCCGTTTGCGACGTTTCGGCGTGCCTTGGGATCGGCCCTGGGG ACTATCGACTTGATGGTTTCTAGCTTTCAGGGGAATGCCCTCCTGTCTCAGCAGGTTTCTAGCAGTGGGCTCAGG GGTCCTTTGCCTGATAACCAGTGGCAGCTTGACGTGACCTACTGGTGGACTACGATGCTGGCTGCTATCCAGGCT TCGTTCGTACAGATGGCTGCCGGCACGACAGACGCTGAGCTTGAACCATACGTTGTGCACCTCAACAGCTCTTAC AAGATATTGGCCTCCGCATTCACTTCGTTCAGTGTATTCGGTCTCTACTTCGTCTACATCTTCGGCTTCGTCATC ATAATCGTCTCTGTCGCGCTCGAACCACTGCTAAGCTTCCTGCGAGAACGGCGCGACCCCAAGCTATACACCCAT CTGGAACGCCAGTCGGACCAGGTCCTCCAGCTTCAGCGCGCCGCCTACCAGGGTATTGGGTCCGGTACCTGGATG GGCTTCGCTGGCGCTGTTCCGAGGACCGAGAGAGTGGAAGCCCTTGCTGATCTATCGGGTCATTATCAAGAGGCA GGCCACGGTGAGAAGACGGATGGTGTTGCGGAAGAGTGTCCCGTGCTATCTGCCTCTACAAATACCGAGGGAGAA GACGGAAGGCAGTTTCGAGCCAATGGATTTGATGAGAGGCGAGAGGAAGAGAGTGGGAGCAGCTCATCGATGAAG ACGGTGGCGGTTCCCCCGACTATTTCTCGGCGGCACTCGACTTCCTAA |
Transcript | >Ophcf2|03859 ATGAGCACCTCGGCCCATCATCGCGTTCATCTTGGATCATGGACCGACTGGTCGCGCGGGCCCGTCATGGGCGTA ACTCTCACCCTCGATCGAACACGAGCATCGCTGCTCATAGCCTTCACAGCCTTCTTCATCGGCATCGTCGCCTCC TGCTTCTGGCGCATCCTCGTCTTCTTCATCCACCGTCTCTACTCGACGCCTAATCCCCGCGATGCCCTCCATCAC CAGCGCCAAGTCCTCCTCCGAAACTCCGTCACCGCTCCCTCCAGCCTCCTAGCCTTTTCGCAGCTCTTCTGGACC TGGCGCCGAGAAGAGGGCACCGTGTGGAGGACGCTTCCCGTAATAGTCTGCGCCGTGGCCTCGATTGTCATCTTC ACCGTCGCCAGCGGCTTCTCGTCTCAGATATCGTCGGCGGTTGGAAACGCTGCCTTGCTGGATGGCTCGCGCTGT GGAATTATTGCGGGCGCGGCTCAGGCAGGTCGCTTGGAGGATCTCGGTGTTCTTCTTCCTTATGGGATTCGTCGC ATCACGGACTCGGCCAACTATGCGCAGCAATGTTACGGGGCTCCGGGCGCTGGTTTGTTGGACTGCGCGACCTTT ATCAAGCGCAGTCTGCCGTATAGCACTGATGATCAGGCTCCGTGTCCCTTTCAGGGCGGTATCTGCCGGACCAAC ACATCCAACCTGCTGTTTGATACCGGATATCTGAACAGTCATGAGCATCTAGGCGTCAACTCCTCTCCCGATCGT CGAATTCTATTCAAGACTACCTTGCACTGCGCGCCCCTGCAGACGGCTGGATACTCCAGAGACATCCAAACGCCT TTCCGCAACTACACTCGATACTACTACGGCCGGAGAACGCACGACACATCTCGTGACCACGATGGGAACTACACG CTGCAAGTCCGCGACCTTGATGACCAGTACGATCACTTCAAGCACGGCTTCGACAATATGGACGGTCATTGGAGC CCGACTCTGCAGTCGTACGTCGCCTTCGTCAAGAACGGTCGCCTCCTACCCACGGGCTCAGAGTTCGTGCCCATC CCCCAACTCTCTCGCTCCGACGGAGACCTCATGATCTTCTTCCTCTCCGGCAACGGCGCCGTATTCATGAGACCG ACACCGGATCCCTGGTACCGCGGAACCGTCCCCGGCCAAAACGTATCCATGGACCACTCCTCAGACTCCCTCTCA TTCCAAACATTCGAGCCCGAAGAGGCAGCTTCACCCATGGCCTGCCTCCAACGACACCAATTCTGCGACGGTTAC GGTCACTGCGGACCGTTGGCCAGTTACCTTGATGCCCTCGCCGGCGCCAGCAGCGTCTTCAACTCGACTGTTCTC CAGAGTCCTCAGGATGGCGAGGAGCCGGCTACGCCGTTTGCGACGTTTCGGCGTGCCTTGGGATCGGCCCTGGGG ACTATCGACTTGATGGTTTCTAGCTTTCAGGGGAATGCCCTCCTGTCTCAGCAGGTTTCTAGCAGTGGGCTCAGG GGTCCTTTGCCTGATAACCAGTGGCAGCTTGACGTGACCTACTGGTGGACTACGATGCTGGCTGCTATCCAGGCT TCGTTCGTACAGATGGCTGCCGGCACGACAGACGCTGAGCTTGAACCATACGTTGTGCACCTCAACAGCTCTTAC AAGATATTGGCCTCCGCATTCACTTCGTTCAGTGTATTCGGTCTCTACTTCGTCTACATCTTCGGCTTCGTCATC ATAATCGTCTCTGTCGCGCTCGAACCACTGCTAAGCTTCCTGCGAGAACGGCGCGACCCCAAGCTATACACCCAT CTGGAACGCCAGTCGGACCAGGTCCTCCAGCTTCAGCGCGCCGCCTACCAGGGTATTGGGTCCGGTACCTGGATG GGCTTCGCTGGCGCTGTTCCGAGGACCGAGAGAGTGGAAGCCCTTGCTGATCTATCGGGTCATTATCAAGAGGCA GGCCACGGTGAGAAGACGGATGGTGTTGCGGAAGAGTGTCCCGTGCTATCTGCCTCTACAAATACCGAGGGAGAA GACGGAAGGCAGTTTCGAGCCAATGGATTTGATGAGAGGCGAGAGGAAGAGAGTGGGAGCAGCTCATCGATGAAG ACGGTGGCGGTTCCCCCGACTATTTCTCGGCGGCACTCGACTTCCTAA |
Gene | >Ophcf2|03859 ATGAGCACCTCGGCCCATCATCGCGTTCATCTTGGATCATGGACCGACTGGTCGCGCGGGCCCGTCATGGGCGTA ACTCTCACCCTCGATCGAACACGAGCATCGCTGCTCATAGCCTTCACAGCCTTCTTCATCGGCATCGTCGCCTCC TGCTTCTGGCGCATCCTCGTCTTCTTCATCCACCGTCTCTACTCGACGCCTAATCCCCGCGATGCCCTCCATCAC CAGCGCCAAGTCCTCCTCCGAAACTCCGTCACCGCTCCCTCCAGCCTCCTAGCCTTTTCGCAGCTCTTCTGGACC TGGCGCCGAGAAGAGGGCACCGTGTGGAGGACGCTTCCCGTAATAGTCTGCGCCGTGGCCTCGATTGTCATCTTC ACCGTCGCCAGCGGCTTCTCGTCTCAGATATCGTCGGCGGTTGGAAACGCTGCCTTGCTGGATGGCTCGCGCTGT GGAATTATTGCGGGCGCGGCTCAGGCAGGTCGCTTGGAGGATCTCGGTGTTCTTCTTCCTTATGGGATTCGTCGC ATCACGGACTCGGCCAACTATGCGCAGCAATGTTACGGGGCTCCGGGCGCTGGTTTGTTGGACTGCGCGACCTTT ATCAAGCGCAGTCTGCCGTATAGCACTGATGATCAGGCTCCGTGTCCCTTTCAGGGCGGTATCTGCCGGACCAAC ACATCCAACCTGCTGTTTGATACCGGATATCTGAACAGTCATGAGCATCTAGGTACGAGGGTATAGGGCTTCTGC TTTGACGAGACGGCGTCTAATGCTCTCGGTCCGAAACAGGCGTCAACTCCTCTCCCGATCGTCGAATTCTATTCA AGACTACCTTGCACTGCGCGCCCCTGCAGACGGCTGGATACTCCAGAGACATCCAAACGCCTTTCCGCAACTACA CTCGATACTACTACGGCCGGAGAACGCACGACACATCTCGTGACCACGATGGGAACTACACGCTGCAAGTCCGCG ACCTTGATGACCAGTACGATCACTTCAAGCACGGCTTCGACAATATGGACGGTCATTGGAGCCCGACTCTGCAGT GAGCCCCCTTTCCCCTTGCTACCTGTAGCCCTAAACGTAATTCTCAAGACGGCTGACACTGTTCCTCGAGGTCGT ACGTCGCCTTCGTCAAGAACGGTCGCCTCCTACCCACGGGCTCAGAGTTCGTGCCCATCCCCCAACTCTCTCGCT CCGACGGAGACCTCATGATCTTCTTCCTCTCCGGCAACGGCGCCGTATTCATGAGACCGACACCGGATCCCTGGT ACCGCGGAACCGTCCCCGGCCAAAACGTATCCATGGACCACTCCTCAGACTCCCTCTCATTCCAAACATTCGAGC CCGAAGAGGCAGCTTCACCCATGGCCTGCCTCCAACGACACCAATTCTGCGACGGTTACGGTCACTGCGGACCGT TGGCCAGTTACCTTGATGCCCTCGCCGGCGCCAGCAGCGTCTTCAACTCGACTGTTCTCCAGAGTCCTCAGGATG GCGAGGAGCCGGCTACGCCGTTTGCGACGTTTCGGCGTGCCTTGGGATCGGCCCTGGGGACTATCGACTTGATGG TTTCTAGCTTTCAGGGGAATGCCCTCCTGTCTCAGCAGGTTTCTAGCAGTGGGCTCAGGGGTCCTTTGCCTGATA ACCAGTGGCAGCTTGACGTGACCTACTGGTGGACTACGATGCTGGCTGCTATCCAGGCTTCGTTCGTACAGATGG CTGCCGGCACGACAGACGCTGAGCTTGAACCATACGTTGTGCACCTCAACAGCTCTTACGTGTGTAATAACCAGG TACAAGCCCTGAATTATGTCTTCCTGTCTTCCAAGACTGACCAGAAGTGCAGAAGATATTGGCCTCCGCATTCAC TTCGTTCAGTGTATTCGGTCTCTACTTCGTCTACATCTTCGGCTTCGTCATCATAATCGTCTCTGTCGCGCTCGA ACCACTGCTAAGCTTCCTGCGAGAACGGCGCGACCCCAAGCTATACACCCATCTGGAACGCCAGTCGGACCAGGT CCTCCAGCTTCAGCGCGCCGCCTACCAGGGTATTGGGTCCGGTACCTGGATGGGCTTCGCTGGCGCTGTTCCGAG GACCGAGAGAGTGGAAGCCCTTGCTGATCTATCGGGTCATTATCAAGAGGCAGGCCACGGTGAGAAGACGGATGG TGTTGCGGAAGAGTGTCCCGTGCTATCTGCCTCTACAAATACCGAGGGAGAAGACGGAAGGCAGTTTCGAGCCAA TGGATTTGATGAGAGGCGAGAGGAAGAGAGTGGGAGCAGCTCATCGATGAAGACGGTGGCGGTTCCCCCGACTAT TTCTCGGCGGCACTCGACTTCCTAA |