© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03840 |
| Gene name | |
| Location | scaffold_04:79855..80821 |
| Strand | - |
| Gene length (bp) | 966 |
| Transcript length (bp) | 840 |
| Coding sequence length (bp) | 840 |
| Protein length (aa) | 280 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01027 | Bax1-I | Inhibitor of apoptosis-promoting Bax1 | 3.9E-53 | 72 | 273 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole|Golgi apparatus | Signal peptide|Transmembrane domain | 0.1496 | 0.1133 | 0.1703 | 0.2321 | 0.2754 | 0.0129 | 0.4533 | 0.8031 | 0.6861 | 0.0041 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 78 | 100 | 22 |
| 2 | 112 | 129 | 17 |
| 3 | 139 | 158 | 19 |
| 4 | 163 | 182 | 19 |
| 5 | 192 | 214 | 22 |
| 6 | 221 | 243 | 22 |
| 7 | 253 | 275 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1358 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03840 MASNPKYQPAPQRDPEDEDYTHAPPAYAAASSSAARDEAQGLFGAPRSSEDNLPDDFKFGGSVAEATVDIRNQFI RKVYTILTIQLLATAGLSGVSFFNASYKSWIQHHPALVWVSLIASLVFMGLTYWKRKSYPTNLLFLTAFTLTEAY TISVIVSFYKTSIVLNAVVLTAGIFVFLTAFACQTKYDFTSWMPYLFGAVWGLFLFGLVAVFLPYNSTVELIYGG VAALIFSAYILVDTQLVLRKHHVEEEIAAAISLYLDIINLFLAILRILNGQSNN* |
| Coding | >Ophcf2|03840 ATGGCTTCTAACCCAAAGTACCAACCCGCGCCCCAGCGCGACCCCGAAGACGAAGACTATACTCACGCGCCCCCC GCCTACGCCGCCGCCTCGTCATCCGCCGCCCGCGACGAGGCACAGGGTCTCTTTGGAGCCCCGCGCTCTAGCGAG GATAATTTGCCGGACGACTTCAAGTTCGGCGGCTCTGTCGCAGAAGCCACCGTCGACATCCGCAACCAGTTCATC CGCAAAGTCTACACCATCCTCACCATCCAGCTCCTCGCCACCGCTGGCCTCAGCGGCGTCTCCTTCTTCAACGCC TCGTACAAGTCGTGGATCCAGCACCATCCAGCTCTCGTCTGGGTTTCCCTCATCGCCTCCCTCGTTTTCATGGGC TTGACCTACTGGAAGCGCAAGTCGTACCCGACCAATCTCCTCTTCCTTACCGCCTTCACCCTCACCGAAGCCTAC ACCATCTCCGTCATCGTCTCTTTCTACAAGACCTCCATCGTCCTCAACGCTGTTGTCCTCACTGCCGGTATCTTC GTCTTCCTAACCGCCTTCGCTTGTCAGACAAAATACGACTTCACATCCTGGATGCCCTACCTCTTCGGCGCAGTC TGGGGCCTCTTCCTCTTCGGTCTCGTCGCGGTCTTCCTGCCATACAACTCCACCGTTGAGCTCATCTACGGTGGC GTCGCTGCTCTCATCTTCAGCGCCTACATCCTCGTCGACACCCAGCTGGTCCTCCGCAAGCACCACGTCGAGGAA GAGATCGCCGCCGCCATCAGCCTGTACCTCGACATCATCAACCTGTTCCTCGCCATCTTGCGCATCCTCAACGGC CAGTCCAACAACTAG |
| Transcript | >Ophcf2|03840 ATGGCTTCTAACCCAAAGTACCAACCCGCGCCCCAGCGCGACCCCGAAGACGAAGACTATACTCACGCGCCCCCC GCCTACGCCGCCGCCTCGTCATCCGCCGCCCGCGACGAGGCACAGGGTCTCTTTGGAGCCCCGCGCTCTAGCGAG GATAATTTGCCGGACGACTTCAAGTTCGGCGGCTCTGTCGCAGAAGCCACCGTCGACATCCGCAACCAGTTCATC CGCAAAGTCTACACCATCCTCACCATCCAGCTCCTCGCCACCGCTGGCCTCAGCGGCGTCTCCTTCTTCAACGCC TCGTACAAGTCGTGGATCCAGCACCATCCAGCTCTCGTCTGGGTTTCCCTCATCGCCTCCCTCGTTTTCATGGGC TTGACCTACTGGAAGCGCAAGTCGTACCCGACCAATCTCCTCTTCCTTACCGCCTTCACCCTCACCGAAGCCTAC ACCATCTCCGTCATCGTCTCTTTCTACAAGACCTCCATCGTCCTCAACGCTGTTGTCCTCACTGCCGGTATCTTC GTCTTCCTAACCGCCTTCGCTTGTCAGACAAAATACGACTTCACATCCTGGATGCCCTACCTCTTCGGCGCAGTC TGGGGCCTCTTCCTCTTCGGTCTCGTCGCGGTCTTCCTGCCATACAACTCCACCGTTGAGCTCATCTACGGTGGC GTCGCTGCTCTCATCTTCAGCGCCTACATCCTCGTCGACACCCAGCTGGTCCTCCGCAAGCACCACGTCGAGGAA GAGATCGCCGCCGCCATCAGCCTGTACCTCGACATCATCAACCTGTTCCTCGCCATCTTGCGCATCCTCAACGGC CAGTCCAACAACTAG |
| Gene | >Ophcf2|03840 ATGGCTTCTAACCCAAAGTACCAACCCGCGCCCCAGCGCGACCCCGAAGACGAAGACTATACTCACGCGCCCCCC GCCTACGCCGCCGCCTCGTCATCCGCCGCCCGCGACGAGGCACAGGGTCTCTTTGGAGCCCCGCGCTCTAGCGAG GATAATTTGCCGGACGACTTCAAGGTGCTGCTTTCCTAAACCACCTCTTTCTTGGTTCCTATGTCGAGTTGCTGA CAGCTTGTCCCGCAGTTCGGCGGCTCTGTCGCAGAAGCCACCGTCGACATCCGCAACCAGTTCATCCGCAAAGTC TACACCATCCTCACCATCCAGCTCCTCGCCACCGCTGGCCTCAGCGGCGTCTCCTTCTTCAACGCCTCGTACAAG TCGTGGATCCAGCACCATCCAGCTCTCGTCTGGGTTTCCGTGCGTTTCCCTTCCTCGAATCCTATTACCTTTTCC GTCTCACGCTGACACTGCATACAGCTCATCGCCTCCCTCGTTTTCATGGGCTTGACCTACTGGAAGCGCAAGTCG TACCCGACCAATCTCCTCTTCCTTACCGCCTTCACCCTCACCGAAGCCTACACCATCTCCGTCATCGTCTCTTTC TACAAGACCTCCATCGTCCTCAACGCTGTTGTCCTCACTGCCGGTATCTTCGTCTTCCTAACCGCCTTCGCTTGT CAGACAAAATACGACTTCACATCCTGGATGCCCTACCTCTTCGGCGCAGTCTGGGGCCTCTTCCTCTTCGGTCTC GTCGCGGTCTTCCTGCCATACAACTCCACCGTTGAGCTCATCTACGGTGGCGTCGCTGCTCTCATCTTCAGCGCC TACATCCTCGTCGACACCCAGCTGGTCCTCCGCAAGCACCACGTCGAGGAAGAGATCGCCGCCGCCATCAGCCTG TACCTCGACATCATCAACCTGTTCCTCGCCATCTTGCGCATCCTCAACGGCCAGTCCAACAACTAG |