© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03810 |
| Gene name | |
| Location | scaffold_03:3890827..3893172 |
| Strand | - |
| Gene length (bp) | 2345 |
| Transcript length (bp) | 1947 |
| Coding sequence length (bp) | 1947 |
| Protein length (aa) | 649 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04152 | Mre11_DNA_bind | Mre11 DNA-binding presumed domain | 3.6E-54 | 290 | 464 |
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 1.6E-15 | 10 | 245 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0006302 | double-strand break repair | Yes |
| GO:0004519 | endonuclease activity | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0030145 | manganese ion binding | Yes |
| GO:0051716 | cellular response to stimulus | No |
| GO:0046914 | transition metal ion binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| GO:0050896 | response to stimulus | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0004518 | nuclease activity | No |
| GO:0008150 | biological_process | No |
| GO:0043167 | ion binding | No |
| GO:0006281 | DNA repair | No |
| GO:0006950 | response to stress | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0046872 | metal ion binding | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0005575 | cellular_component | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03810 MSELTEADTIRILIATDNHVGFEERDAIRKDDSWRTFDEIMNIARTEDVDMVLLAGDLFHDNKPSRKSLYQVMRA LRKNCLGMKPCPLEFLSDAAEVFEGAFTHVNYEDPDINISIPVFSIHGNHDDPSGDGNLCSLDLLQASGLLNYFG RVAEADNIEAKPILLQKGLTKLALFGLSNVRDERMFRTFRDHKVKWYRPNVQMDDWFNLLAVHQNHHAHTATSYL PENVLPDWLDLVVWGHEHECLIDPTKNPETGFHVMQPGSSVATSLVPGEAVQKHVAIVSITGKDFRVDKIPLQTV RPFVTRELVLSQDTRFKGLDKKKDNRQEVTRRLMEVVEEMIEEANTEWEAIQTNDTALEGRPLPLIRLKVEYGAQ EGCQFECENPQRFSNRFVGKVANTNDVVYFHRKKTSIKKVTAVTPAETLEALADGSDVVKVESLVRDFLSAQSLK VLPQGPFGEAVNQFVAKDDKHAMELFVSEHLTGQVKQLLGLESDDEDLSGAMEIYPQRKIIDSEIPQGEWWQDAR RRGRRQTGSKDWDEGTGSKVDYDIKDNHEKDGIDSGSWTENGESPPPKAESKTRRAQAIRATTSKRPTRTTTTRG AAKARQTKLNFSQKGATQEQALEVSDDDISDDDDAFEPAPVATRTRRR* |
| Coding | >Ophcf2|03810 ATGAGCGAACTCACAGAGGCGGATACGATCCGAATCCTGATTGCAACCGACAACCACGTCGGCTTCGAGGAGCGC GATGCCATCCGAAAAGATGACAGCTGGCGCACGTTTGACGAGATCATGAACATTGCGAGAACAGAAGACGTTGAC ATGGTTCTGCTCGCTGGCGATCTTTTCCACGATAACAAACCCTCCCGCAAGTCGCTATACCAAGTCATGCGGGCC TTGCGCAAGAACTGTCTTGGAATGAAACCATGTCCTCTCGAGTTTCTCTCCGACGCTGCCGAGGTCTTTGAAGGC GCCTTCACCCATGTCAACTACGAAGATCCCGACATAAATATCTCGATTCCCGTCTTCTCTATCCATGGAAATCAC GACGACCCCTCGGGCGATGGTAACCTGTGCTCGCTCGACCTATTGCAGGCCAGCGGCCTTCTTAACTACTTTGGC CGCGTGGCCGAAGCTGACAACATCGAGGCGAAGCCCATCCTGCTGCAGAAGGGCCTCACGAAATTGGCTCTGTTT GGGCTCAGCAATGTCCGCGACGAACGCATGTTTCGCACCTTTAGGGACCACAAAGTCAAATGGTACCGTCCAAAT GTGCAGATGGACGACTGGTTTAATCTGCTCGCCGTACACCAGAACCACCACGCGCATACCGCCACGTCTTACCTG CCCGAAAACGTGCTACCCGACTGGCTGGATCTCGTTGTGTGGGGGCATGAGCATGAATGCCTCATCGATCCCACG AAGAATCCCGAGACTGGTTTCCACGTCATGCAGCCCGGTTCGTCCGTGGCTACCTCCCTGGTGCCAGGAGAGGCT GTTCAGAAACACGTGGCAATCGTCAGCATCACCGGAAAGGACTTTCGAGTCGACAAGATCCCGCTGCAGACTGTG CGGCCGTTTGTCACCCGTGAGCTTGTTCTATCTCAGGATACCAGGTTCAAGGGCCTGGACAAGAAGAAGGACAAC AGGCAGGAAGTCACGCGTCGATTGATGGAGGTGGTTGAGGAGATGATTGAAGAAGCAAATACCGAGTGGGAAGCA ATCCAGACAAACGATACCGCACTCGAAGGGCGTCCTCTGCCACTCATCCGCCTCAAGGTGGAATACGGCGCTCAA GAGGGGTGCCAATTCGAATGCGAAAACCCTCAGCGCTTCTCCAATCGATTCGTTGGCAAGGTGGCCAACACAAAC GACGTTGTCTACTTTCACCGGAAGAAGACTTCGATCAAGAAAGTCACGGCCGTCACGCCGGCAGAAACGCTGGAA GCTCTCGCCGACGGCAGCGACGTCGTTAAGGTTGAATCGCTTGTCCGAGACTTTTTGTCGGCCCAGTCCCTCAAG GTGCTGCCGCAAGGCCCCTTTGGTGAGGCTGTCAACCAGTTTGTCGCAAAAGACGACAAGCACGCCATGGAGCTT TTCGTCTCAGAGCACCTTACGGGTCAGGTGAAGCAGCTGCTGGGCCTTGAGTCAGACGACGAAGACCTCAGTGGT GCAATGGAAATTTACCCCCAAAGGAAGATCATCGACAGCGAAATCCCGCAAGGGGAGTGGTGGCAGGATGCCAGA CGCAGGGGAAGACGACAAACCGGTTCCAAGGACTGGGACGAAGGCACGGGCAGCAAGGTCGACTACGACATCAAA GACAACCACGAGAAAGACGGCATCGACTCGGGGTCGTGGACGGAAAATGGGGAATCGCCGCCGCCAAAAGCCGAA TCCAAGACGCGGCGAGCTCAAGCCATCAGAGCCACCACTTCGAAGCGACCGACGAGGACGACAACGACGAGAGGC GCAGCAAAGGCGCGGCAGACTAAACTCAACTTCTCGCAAAAAGGAGCGACTCAGGAGCAAGCGCTGGAAGTCAGC GACGACGACATCTCGGACGATGACGACGCGTTTGAACCGGCGCCAGTGGCAACGAGGACAAGGAGACGGTGA |
| Transcript | >Ophcf2|03810 ATGAGCGAACTCACAGAGGCGGATACGATCCGAATCCTGATTGCAACCGACAACCACGTCGGCTTCGAGGAGCGC GATGCCATCCGAAAAGATGACAGCTGGCGCACGTTTGACGAGATCATGAACATTGCGAGAACAGAAGACGTTGAC ATGGTTCTGCTCGCTGGCGATCTTTTCCACGATAACAAACCCTCCCGCAAGTCGCTATACCAAGTCATGCGGGCC TTGCGCAAGAACTGTCTTGGAATGAAACCATGTCCTCTCGAGTTTCTCTCCGACGCTGCCGAGGTCTTTGAAGGC GCCTTCACCCATGTCAACTACGAAGATCCCGACATAAATATCTCGATTCCCGTCTTCTCTATCCATGGAAATCAC GACGACCCCTCGGGCGATGGTAACCTGTGCTCGCTCGACCTATTGCAGGCCAGCGGCCTTCTTAACTACTTTGGC CGCGTGGCCGAAGCTGACAACATCGAGGCGAAGCCCATCCTGCTGCAGAAGGGCCTCACGAAATTGGCTCTGTTT GGGCTCAGCAATGTCCGCGACGAACGCATGTTTCGCACCTTTAGGGACCACAAAGTCAAATGGTACCGTCCAAAT GTGCAGATGGACGACTGGTTTAATCTGCTCGCCGTACACCAGAACCACCACGCGCATACCGCCACGTCTTACCTG CCCGAAAACGTGCTACCCGACTGGCTGGATCTCGTTGTGTGGGGGCATGAGCATGAATGCCTCATCGATCCCACG AAGAATCCCGAGACTGGTTTCCACGTCATGCAGCCCGGTTCGTCCGTGGCTACCTCCCTGGTGCCAGGAGAGGCT GTTCAGAAACACGTGGCAATCGTCAGCATCACCGGAAAGGACTTTCGAGTCGACAAGATCCCGCTGCAGACTGTG CGGCCGTTTGTCACCCGTGAGCTTGTTCTATCTCAGGATACCAGGTTCAAGGGCCTGGACAAGAAGAAGGACAAC AGGCAGGAAGTCACGCGTCGATTGATGGAGGTGGTTGAGGAGATGATTGAAGAAGCAAATACCGAGTGGGAAGCA ATCCAGACAAACGATACCGCACTCGAAGGGCGTCCTCTGCCACTCATCCGCCTCAAGGTGGAATACGGCGCTCAA GAGGGGTGCCAATTCGAATGCGAAAACCCTCAGCGCTTCTCCAATCGATTCGTTGGCAAGGTGGCCAACACAAAC GACGTTGTCTACTTTCACCGGAAGAAGACTTCGATCAAGAAAGTCACGGCCGTCACGCCGGCAGAAACGCTGGAA GCTCTCGCCGACGGCAGCGACGTCGTTAAGGTTGAATCGCTTGTCCGAGACTTTTTGTCGGCCCAGTCCCTCAAG GTGCTGCCGCAAGGCCCCTTTGGTGAGGCTGTCAACCAGTTTGTCGCAAAAGACGACAAGCACGCCATGGAGCTT TTCGTCTCAGAGCACCTTACGGGTCAGGTGAAGCAGCTGCTGGGCCTTGAGTCAGACGACGAAGACCTCAGTGGT GCAATGGAAATTTACCCCCAAAGGAAGATCATCGACAGCGAAATCCCGCAAGGGGAGTGGTGGCAGGATGCCAGA CGCAGGGGAAGACGACAAACCGGTTCCAAGGACTGGGACGAAGGCACGGGCAGCAAGGTCGACTACGACATCAAA GACAACCACGAGAAAGACGGCATCGACTCGGGGTCGTGGACGGAAAATGGGGAATCGCCGCCGCCAAAAGCCGAA TCCAAGACGCGGCGAGCTCAAGCCATCAGAGCCACCACTTCGAAGCGACCGACGAGGACGACAACGACGAGAGGC GCAGCAAAGGCGCGGCAGACTAAACTCAACTTCTCGCAAAAAGGAGCGACTCAGGAGCAAGCGCTGGAAGTCAGC GACGACGACATCTCGGACGATGACGACGCGTTTGAACCGGCGCCAGTGGCAACGAGGACAAGGAGACGGTGA |
| Gene | >Ophcf2|03810 ATGAGCGAACTCACAGGTATGCGCAAATTCCTTGAAGTCTCGAGCTATCGCTCTTTCTATGACTTACTGTTTCTA GAGGCGGATACGATCCGAATCCTGATTGCAACCGACAACCACGTCGGCTTCGAGGAGCGCGATGCCATCCGAAAA GATGACAGCTGGCGCACGTTTGACGAGATCATGAACATTGCGAGAACAGAAGACGCACGTTTCTCCCCATCTTCT TATACTCCGCTCTCAACTAACAGACGTCGACTAGGTTGACATGGTTCTGCTCGCTGGCGATCTTTTCCACGATAA CAAACCCTCCCGCAAGTCGCTATACCAAGTCATGCGGGCCTTGCGCAAGAACTGTCTTGGAATGAAACCATGTCC TCTCGAGTTTCTCTCCGACGCTGCCGAGGTCTTTGAAGGCGCCTTCACCCATGTCAACTACGAAGATCCCGACAT AAATATCTCGATTCCCGTCTTCTCTATCCATGGAAATCACGACGACCCCTCGGGCGATGGTAACCTGTGCTCGCT CGACCTATTGCAGGCCAGCGGCCTTCTTAACTACTTTGGCCGCGTGGCCGAAGCTGACAACATCGAGGCGAAGCC CATCCTGCTGCAGAAGGGCCTCACGAAATTGGCTCTGTTTGGGCTCAGCAATGTCCGCGACGAACGCATGTTTCG CACCTTTAGGGACCACAAAGTCAAATGGTACCGTCCAAATGTGCAGATGGACGACTGGTTTAATCTGCTCGCCGT ACACCAGAACCACCACGCGCATACCGCCACGTCTTACCTGCCCGAAAACGTGCTACCCGACTGGCTGGATCTCGT TGTGTGGGGGCATGAGCATGAATGCCTCATCGATCCCACGAAGAATCCCGAGACTGGTTTCCACGTCATGCAGCC CGGTTCGTCCGTGGCTACCTCCCTGGTGCCAGGAGAGGCTGTTCAGAAACACGTGGCAATCGTCAGCATCACCGG AAAGGACTTTCGAGTCGACAAGATCCCGCTGCAGACTGTGCGGCCGTTTGTCACCCGTGAGCTTGTTCTATCTCA GGATACCAGGTTCAAGGGCCTGGACAAGAAGAAGGACAACAGGCAGGAAGTCACGCGTCGATTGATGGAGGTGGT TGAGGAGATGATTGAAGAAGCAAATACCGAGTGGGAAGCAATCCAGACAAACGATACCGCACTCGAAGGGCGTCC TCTGCCACTCATCCGCCTCAAGGTGGAATACGGCGCTCAAGAGGGGTGCCAATTCGAATGCGAAAACCCTCAGCG CTTCTCCAATCGATTCGTTGGCAAGGTGGCCAACACAAACGACGTTGTCTACTTTCACCGGAAGAAGACTTCGAT CAGTAAGTGCAGCTTGCTTCACTCCATTCTTGATGCTGAAATTCGTTTTAGAGAAAGTCACGGCCGTCACGCCGG CAGAAACGCTGGAAGCTCTCGCCGACGGCAGCGACGTCGTTAAGGTTGAATCGCTTGTCCGAGACTTTTTGTCGG CCCAGTCCCTCAAGGTGCTGCCGCAAGGCCCCTTTGGTGAGGCTGTCAACCAGTTTGTCGCAAAAGACGACAAGC ACGCCATGGAGCTTTTCGTCTCAGAGCACCTTACGGGTCAGGTGAAGCAGCTGCTGGGCCTTGAGTCAGACGACG AAGACCTCAGTGGTGCAATGGAAATTTACCGTACGAGGATAGAGCAGCAGGTAGCGACTGGGGCAGCAAGACAAC TAGGAGAAAGAAAGCGCATTTTGAGGCCCAAGCCTGATACCTGGGACAGCGATTTTGACGGGAATTGGGAGGATG AACCCGATGCTTGGACGTTTGAGGACGCAACACTCAACGTTGACTCCATATCAGAGACACAGCCCAAAGGAAGAT CATCGACAGCGAAATCCCGCAAGGGGAGTGGTGGCAGGATGCCAGACGCAGGGGAAGACGACAAACCGGTTCCAA GGACTGGGACGAAGGCACGGGCAGCAAGGTCGACTACGACATCAAAGACAACCACGAGAAAGACGGCATCGACTC GGGGTCGTGGACGGAAAGTAGTCGAAGAAAGCAACGACGGGGCCGATGAGGATATCATCATGGAGTCAGATGGGG AATCGCCGCCGCCAAAAGCCGAATCCAAGACGCGGCGAGCTCAAGCCATCAGAGCCACCACTTCGAAGCGACCGA CGAGGACGACAACGACGAGAGGCGCAGCAAAGGCGCGGCAGACTAAACTCAACTTCTCGCAAAAAGGAGCGACTC AGGAGCAAGCGCTGGAAGTCAGCGACGACGACATCTCGGACGATGACGACGCGTTTGAACCGGCGCCAGTGGCAA CGAGGACAAGGAGACGGTGA |