© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03787 |
| Gene name | |
| Location | scaffold_03:3833633..3834403 |
| Strand | - |
| Gene length (bp) | 770 |
| Transcript length (bp) | 549 |
| Coding sequence length (bp) | 549 |
| Protein length (aa) | 183 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 19 | 41 | 22 |
| 2 | 61 | 83 | 22 |
| 3 | 90 | 108 | 18 |
| 4 | 118 | 140 | 22 |
| 5 | 153 | 175 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 60.36 | 28.30 | 92.43 |
| Alive | In ants, during behavior modification | 47.20 | 20.13 | 74.27 |
| Dead | In ants, recently dead | 39.26 | 16.37 | 62.16 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.344481 | no |
| Alive | Dead | 0.437253 | no |
| Dead | Fungus | 0.076590 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03787 MALNGWFPPSTRARYETMLLLWQLIFPIMGSMQWFIEWYGMGKTSRPSRLNLPGRGAWMTMEAPGFLMLVYTVHS LSGGVAGLPWRNQVLTGLFVIHYIYRAILFPLLQPSMAPIHLAVWTMALTFQLLNASCLGAWLAVHGPTTAQEWT RQSPLPQFILGLSLFYAGLAANFFHDEEGWVL* |
| Coding | >Ophcf2|03787 ATGGCCCTCAACGGCTGGTTTCCCCCCTCCACCCGTGCCCGCTACGAAACGATGCTACTTCTATGGCAGCTCATC TTCCCCATCATGGGATCGATGCAATGGTTCATTGAGTGGTATGGGATGGGGAAGACTTCGAGACCTAGCAGGTTG AATCTTCCGGGGAGGGGGGCGTGGATGACGATGGAGGCGCCTGGGTTTCTGATGCTGGTTTATACGGTTCATTCG CTTTCGGGCGGGGTGGCGGGTCTGCCTTGGAGGAATCAGGTCCTCACCGGCCTCTTCGTCATCCACTACATCTAC CGCGCAATCCTCTTCCCCCTCCTCCAACCCTCCATGGCCCCCATCCACCTCGCCGTCTGGACAATGGCGCTCACC TTCCAGCTCCTAAACGCAAGCTGCCTGGGCGCCTGGCTAGCCGTGCACGGCCCAACCACAGCGCAAGAATGGACG CGGCAAAGTCCCCTCCCGCAATTCATCCTCGGCCTAAGCCTCTTCTACGCCGGACTGGCGGCGAATTTCTTCCAC GATGAGGAGGGGTGGGTATTATGA |
| Transcript | >Ophcf2|03787 ATGGCCCTCAACGGCTGGTTTCCCCCCTCCACCCGTGCCCGCTACGAAACGATGCTACTTCTATGGCAGCTCATC TTCCCCATCATGGGATCGATGCAATGGTTCATTGAGTGGTATGGGATGGGGAAGACTTCGAGACCTAGCAGGTTG AATCTTCCGGGGAGGGGGGCGTGGATGACGATGGAGGCGCCTGGGTTTCTGATGCTGGTTTATACGGTTCATTCG CTTTCGGGCGGGGTGGCGGGTCTGCCTTGGAGGAATCAGGTCCTCACCGGCCTCTTCGTCATCCACTACATCTAC CGCGCAATCCTCTTCCCCCTCCTCCAACCCTCCATGGCCCCCATCCACCTCGCCGTCTGGACAATGGCGCTCACC TTCCAGCTCCTAAACGCAAGCTGCCTGGGCGCCTGGCTAGCCGTGCACGGCCCAACCACAGCGCAAGAATGGACG CGGCAAAGTCCCCTCCCGCAATTCATCCTCGGCCTAAGCCTCTTCTACGCCGGACTGGCGGCGAATTTCTTCCAC GATGAGGAGGGGTGGGTATTATGA |
| Gene | >Ophcf2|03787 ATGGCCCTCAACGGCTGGTTTCCCCCCTCCACCCGTGCCCGCTACGAAACGATGCTACTTCTATGGCAGCTCATC TTCCCCATCGCAAGTTCCCCCCCCCCCCTTGGGAGTATGTCGACGGCGAATCGCTGATGAGGAGATGGGGGCAGA TGGGATCGATGCAATGGTTCATTGAGTGGTATGGGATGGGGAAGACTTCGAGACCTAGCAGGTTGAATCTTCCGG GGAGGGGGGCGTGGATGACGATGGAGGCGCCTGGGTTTCTGATGCTGGTTTATACGGTTCATTCGCTTTCGGGCG GGGTGGCGGGTCTGCCTTGGAGGAATCAGGTCCTCACCGGCCTCTTCGTACCCCCCTCCCCCCCCCCCCAAAATT GATTCTATACAGACAGATGGAAGCTGACTATCTATGTATGTAGGTCATCCACTACATCTACCGCGCAATCCTCTT CCCCCTCCTCCAACCCTCCATGGCCCCCATCCACCTCGCCGTCTGGACAATGGCGCTCACCTTCCAGCTCCTAAA CGCAAGCTGCCTGGGCGCCTGGCTAGCCGTGCACGGCCCAACCACAGCGCAAGAATGGACGCGGCAAAGTCCCCT CCCGCAATTCATCCTCGGCCTAAGCCTCTTCTACGCCGGACTGGCGGCGAATTTCTTCCACGATGAGGAGTTGAG GGAGATTCGAAGGCGGCGGCTTCGTCGTCTTCGTCACGAGCATCGTCGTGGTGGTGACCAGAGGGGTGGGGGTTA CAAGGGGGTGGGTATTATGA |