© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03753 |
| Gene name | |
| Location | scaffold_03:3733913..3734801 |
| Strand | - |
| Gene length (bp) | 888 |
| Transcript length (bp) | 837 |
| Coding sequence length (bp) | 837 |
| Protein length (aa) | 279 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08660 | Alg14 | Oligosaccharide biosynthesis protein Alg14 like | 2.8E-39 | 77 | 261 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 153 | 175 | 22 |
| 3 | 190 | 212 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 56.46 | 29.55 | 83.36 |
| Alive | In ants, during behavior modification | 79.88 | 43.12 | 116.65 |
| Dead | In ants, recently dead | 57.35 | 30.09 | 84.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.089776 | no |
| Alive | Dead | 0.054675 | no |
| Dead | Fungus | 0.953725 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03753 MRRSSGPAAASLAAGLTILRLSPHSIIVKTSFALAVALAIFATTRHVQLLRHRRVTRWPSRNAPVVPLAERPDYH LFVLGSGGHTKEMLMMMDDGFCDMARLHRRYLLSSGDRVSRHQLEDYEARLTSLCCGAGTEAGTYDVRTVLRARR VHQSLLTTPFTALASIAAIVSVLLSPPVNVTGRAVKFPTMVFSNGPGTGFCVALAVHLLKVFCVVPDDVMRFVYV ESWARISSLSLTARLLRRLGVADALYVQHAEVAAKYGLPCAGEMVLNARHLDD* |
| Coding | >Ophcf2|03753 ATGCGCCGCTCCTCGGGGCCCGCAGCAGCCTCACTCGCAGCGGGCCTCACCATCTTGCGCCTAAGCCCTCACAGC ATCATCGTGAAAACGAGCTTCGCCCTAGCCGTCGCCCTGGCCATCTTCGCCACGACGAGACACGTTCAGCTTCTT CGTCACCGCCGCGTAACCCGCTGGCCCTCGAGAAACGCACCGGTCGTGCCCCTCGCTGAACGGCCAGACTATCAC CTCTTCGTCCTCGGCTCTGGCGGACATACGAAGGAGATGCTCATGATGATGGACGATGGCTTCTGTGATATGGCG CGTCTTCATCGTCGGTATCTGCTTTCTAGCGGCGATCGTGTCTCGCGTCATCAACTTGAAGACTACGAGGCTCGG CTTACGAGCCTGTGTTGCGGGGCGGGAACGGAGGCTGGCACGTACGATGTTCGAACCGTTCTGCGCGCCCGTCGT GTACATCAGTCTCTTCTCACGACGCCATTTACGGCTCTCGCTTCCATCGCGGCCATCGTGTCCGTTCTGCTATCG CCACCGGTCAACGTGACGGGTCGAGCGGTGAAGTTCCCGACCATGGTGTTTTCGAATGGTCCTGGAACGGGTTTC TGCGTCGCGCTGGCTGTACATCTTCTCAAGGTGTTCTGCGTCGTGCCTGATGATGTTATGCGCTTCGTCTACGTT GAGTCGTGGGCGCGGATATCGTCGCTCAGCTTGACGGCTCGTCTGCTGCGGCGGTTGGGCGTTGCTGATGCATTG TACGTTCAGCACGCTGAGGTGGCTGCCAAGTACGGCCTGCCGTGTGCCGGGGAGATGGTTCTCAACGCGAGGCAT CTGGACGACTAG |
| Transcript | >Ophcf2|03753 ATGCGCCGCTCCTCGGGGCCCGCAGCAGCCTCACTCGCAGCGGGCCTCACCATCTTGCGCCTAAGCCCTCACAGC ATCATCGTGAAAACGAGCTTCGCCCTAGCCGTCGCCCTGGCCATCTTCGCCACGACGAGACACGTTCAGCTTCTT CGTCACCGCCGCGTAACCCGCTGGCCCTCGAGAAACGCACCGGTCGTGCCCCTCGCTGAACGGCCAGACTATCAC CTCTTCGTCCTCGGCTCTGGCGGACATACGAAGGAGATGCTCATGATGATGGACGATGGCTTCTGTGATATGGCG CGTCTTCATCGTCGGTATCTGCTTTCTAGCGGCGATCGTGTCTCGCGTCATCAACTTGAAGACTACGAGGCTCGG CTTACGAGCCTGTGTTGCGGGGCGGGAACGGAGGCTGGCACGTACGATGTTCGAACCGTTCTGCGCGCCCGTCGT GTACATCAGTCTCTTCTCACGACGCCATTTACGGCTCTCGCTTCCATCGCGGCCATCGTGTCCGTTCTGCTATCG CCACCGGTCAACGTGACGGGTCGAGCGGTGAAGTTCCCGACCATGGTGTTTTCGAATGGTCCTGGAACGGGTTTC TGCGTCGCGCTGGCTGTACATCTTCTCAAGGTGTTCTGCGTCGTGCCTGATGATGTTATGCGCTTCGTCTACGTT GAGTCGTGGGCGCGGATATCGTCGCTCAGCTTGACGGCTCGTCTGCTGCGGCGGTTGGGCGTTGCTGATGCATTG TACGTTCAGCACGCTGAGGTGGCTGCCAAGTACGGCCTGCCGTGTGCCGGGGAGATGGTTCTCAACGCGAGGCAT CTGGACGACTAG |
| Gene | >Ophcf2|03753 ATGCGCCGCTCCTCGGGGCCCGCAGCAGCCTCACTCGCAGCGGGCCTCACCATCTTGCGCCTAAGCCCTCACAGC ATCATCGTGAAAACGAGCTTCGCCCTAGCCGTCGCCCTGGCCATCTTCGCCACGGTTCGTCTCCCCTTCAGTTCC CATCCTGGCAAAACTGACGAGCGCACCAAGACGAGACACGTTCAGCTTCTTCGTCACCGCCGCGTAACCCGCTGG CCCTCGAGAAACGCACCGGTCGTGCCCCTCGCTGAACGGCCAGACTATCACCTCTTCGTCCTCGGCTCTGGCGGA CATACGAAGGAGATGCTCATGATGATGGACGATGGCTTCTGTGATATGGCGCGTCTTCATCGTCGGTATCTGCTT TCTAGCGGCGATCGTGTCTCGCGTCATCAACTTGAAGACTACGAGGCTCGGCTTACGAGCCTGTGTTGCGGGGCG GGAACGGAGGCTGGCACGTACGATGTTCGAACCGTTCTGCGCGCCCGTCGTGTACATCAGTCTCTTCTCACGACG CCATTTACGGCTCTCGCTTCCATCGCGGCCATCGTGTCCGTTCTGCTATCGCCACCGGTCAACGTGACGGGTCGA GCGGTGAAGTTCCCGACCATGGTGTTTTCGAATGGTCCTGGAACGGGTTTCTGCGTCGCGCTGGCTGTACATCTT CTCAAGGTGTTCTGCGTCGTGCCTGATGATGTTATGCGCTTCGTCTACGTTGAGTCGTGGGCGCGGATATCGTCG CTCAGCTTGACGGCTCGTCTGCTGCGGCGGTTGGGCGTTGCTGATGCATTGTACGTTCAGCACGCTGAGGTGGCT GCCAAGTACGGCCTGCCGTGTGCCGGGGAGATGGTTCTCAACGCGAGGCATCTGGACGACTAG |