© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03737 |
| Gene name | |
| Location | scaffold_03:3695967..3698376 |
| Strand | - |
| Gene length (bp) | 2409 |
| Transcript length (bp) | 2409 |
| Coding sequence length (bp) | 2409 |
| Protein length (aa) | 803 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07993 | NAD_binding_4 | Male sterility protein | 2.0E-31 | 411 | 644 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.1E-10 | 409 | 615 |
| PF00550 | PP-binding | Phosphopantetheine attachment site | 1.6E-04 | 301 | 364 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.6799 | 0.584 | 0.0835 | 0.0658 | 0.2558 | 0.018 | 0.0594 | 0.0835 | 0.1509 | 0.2787 |
| Orthofinder run ID | 4 |
| Orthogroup | 4820 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03737 MPMTARNVMQAVQTARLTSPVPVSYFSSVPFVLQRLAEDDGGVDMLRSMTIVSFGGAALPVSVGDALVEAGVHLS SRFGSAESGFLMSSHRDYAVDDEWQYLRPVQDEKLLSFEPRGRGLWELVVKPAWPVRAKTNRPDGSYATSDLFEP HPHRSGLWRHHSRADGQMTLLNGKKFDPAPMEADILASTHNLLRDVLIFGEGRDYPGLLLFPLSNQDDDVSEKLW PEIERVNATTASHARITKPMLIVIPDEEIPLPKSSKGSILRHQAQEKYASVIDSAYRVVVASPAVLVPDGEVLPI VLDCFRRVLARTIHQDDDLFRQGVDSIACIQVRNLLQAASLTRRELPPNVIYDTGTVTRLVSYILRLRNGQDGSG EEDEEACIMNRLVNRYTMFPHLDFVPRNQRPTSIVLTGATGFMGARVLRQLLQNTSVNKVYCLVRATTRHEALER VKRSLRVLGPDCESPKLACLPYNLSITELGLSGTDELLLTREATVYIHLAWAVNFGLNLSSFEHHISGTHHLLTL SAKSRASFFFISSTAAVLRSSNVPIPETPSEDATEASPLGYGRSKWVAERVCAVANRLYASSAPVSVIRVGQLCG DEDGVWNASEAFPLMLSTASVAGCLPDLPGEVLNWLPVEQAARAVTEIALSSHPVDKMEYGSQTGTLVYHVLNPS PWPTWKQLLQWVSEEEGGPCFQIVSPKTWLSRLEEALKCKRPSGHPAEPLLEVWKNSYSEVDRDPRPTFPEFDIE RSQRMSATLRLVGPLSRERVIKLWRWIQCVDLGRVQATDNNHEHTYLCINQR* |
| Coding | >Ophcf2|03737 ATGCCCATGACGGCAAGAAACGTCATGCAGGCCGTTCAGACCGCCCGGCTTACAAGCCCCGTCCCCGTCTCCTAC TTCTCATCAGTACCCTTCGTCCTCCAGAGACTGGCCGAAGACGATGGCGGCGTCGACATGCTCCGCTCCATGACA ATCGTCTCCTTCGGCGGCGCGGCCCTCCCCGTCTCGGTGGGAGACGCCCTCGTCGAAGCAGGGGTGCACCTCTCC TCACGCTTCGGCAGCGCCGAGTCGGGCTTCCTCATGTCGTCTCATCGCGACTACGCCGTCGATGACGAGTGGCAG TATCTCCGTCCCGTGCAGGACGAGAAGCTCCTGTCGTTTGAACCGCGGGGACGGGGTCTATGGGAACTGGTGGTG AAGCCTGCATGGCCGGTTCGAGCGAAGACGAATAGACCGGATGGATCGTACGCTACGTCGGATCTCTTCGAGCCG CATCCTCATCGATCCGGATTATGGCGTCATCACAGCAGAGCCGACGGCCAGATGACGCTGCTCAACGGAAAGAAG TTCGATCCTGCTCCCATGGAAGCCGATATCCTCGCCTCGACCCATAATCTTCTCCGAGACGTCCTCATCTTCGGC GAGGGTAGAGACTATCCCGGCCTTCTCCTCTTCCCCCTTTCAAACCAAGACGACGACGTAAGCGAAAAGCTATGG CCGGAGATCGAAAGGGTCAACGCCACGACAGCAAGCCACGCTCGCATCACGAAACCGATGCTCATCGTCATCCCC GACGAAGAGATCCCCCTTCCGAAAAGCAGCAAAGGCAGCATCCTTCGCCACCAAGCACAAGAGAAATACGCCAGC GTCATCGACTCGGCCTACCGGGTTGTCGTTGCCTCGCCAGCCGTTCTCGTGCCGGATGGAGAGGTCCTCCCCATC GTCTTGGATTGCTTCCGCCGAGTTCTCGCCCGGACGATACATCAGGATGACGATCTGTTTCGTCAGGGCGTCGAC TCCATTGCCTGCATTCAGGTGAGGAACCTGCTGCAAGCCGCCAGCCTCACCCGTAGAGAGCTGCCCCCCAACGTG ATATACGACACCGGGACGGTAACGCGCCTCGTGTCCTATATCCTCCGTCTTCGAAACGGACAGGATGGGAGCGGG GAGGAAGATGAGGAAGCTTGCATCATGAACCGCCTCGTCAACAGATACACCATGTTCCCTCATCTCGACTTCGTC CCCCGCAACCAGCGACCAACATCCATCGTCCTCACCGGCGCAACGGGCTTCATGGGAGCGCGCGTCCTGCGACAA CTCCTCCAAAACACCAGCGTCAACAAGGTCTACTGCCTGGTCCGCGCAACGACACGACACGAAGCCCTCGAGCGG GTAAAGCGATCCCTACGAGTCCTCGGCCCCGACTGCGAATCCCCCAAGCTCGCCTGTCTCCCCTACAACCTCTCC ATCACGGAGCTGGGCCTCTCCGGGACGGACGAGCTTCTCCTGACCCGCGAGGCAACAGTCTACATCCACCTAGCC TGGGCCGTCAACTTCGGCCTCAACCTCTCCTCCTTCGAACACCACATATCCGGAACACACCACCTCCTAACCCTC TCAGCGAAAAGCCGAGCCTCCTTCTTCTTCATAAGCTCCACAGCTGCAGTCCTTCGTTCCTCCAACGTGCCCATC CCCGAAACCCCCTCGGAAGACGCGACCGAGGCCTCGCCGCTGGGATACGGCAGGTCGAAATGGGTAGCAGAGCGT GTCTGCGCGGTTGCGAATCGGCTCTACGCTTCTTCTGCGCCCGTCTCCGTCATCCGAGTGGGCCAGCTCTGCGGC GATGAAGACGGCGTGTGGAATGCCAGCGAGGCTTTCCCCCTGATGCTCTCCACGGCGAGCGTTGCTGGCTGTCTG CCTGATCTCCCGGGGGAGGTCCTCAACTGGCTCCCCGTTGAACAAGCCGCGCGAGCAGTCACGGAGATTGCTCTC TCGTCTCATCCTGTTGACAAGATGGAGTACGGCTCGCAGACGGGAACCCTAGTCTACCATGTCCTCAACCCTTCC CCTTGGCCGACATGGAAACAACTCCTGCAGTGGGTTTCCGAAGAAGAAGGCGGACCTTGTTTCCAAATCGTCTCG CCCAAGACCTGGCTCTCTCGTCTGGAGGAGGCCTTGAAATGCAAGAGACCATCCGGCCATCCAGCAGAGCCGCTC CTCGAGGTCTGGAAGAACAGCTACAGCGAGGTCGACCGAGATCCCAGACCAACGTTCCCCGAGTTCGACATCGAG CGGAGCCAGCGGATGTCGGCGACCCTGCGACTTGTCGGCCCGTTGAGTCGGGAGCGCGTCATCAAGTTGTGGAGG TGGATACAATGCGTCGACCTTGGTCGAGTTCAAGCCACGGACAATAATCATGAGCACACGTATCTATGTATAAAC CAAAGATAG |
| Transcript | >Ophcf2|03737 ATGCCCATGACGGCAAGAAACGTCATGCAGGCCGTTCAGACCGCCCGGCTTACAAGCCCCGTCCCCGTCTCCTAC TTCTCATCAGTACCCTTCGTCCTCCAGAGACTGGCCGAAGACGATGGCGGCGTCGACATGCTCCGCTCCATGACA ATCGTCTCCTTCGGCGGCGCGGCCCTCCCCGTCTCGGTGGGAGACGCCCTCGTCGAAGCAGGGGTGCACCTCTCC TCACGCTTCGGCAGCGCCGAGTCGGGCTTCCTCATGTCGTCTCATCGCGACTACGCCGTCGATGACGAGTGGCAG TATCTCCGTCCCGTGCAGGACGAGAAGCTCCTGTCGTTTGAACCGCGGGGACGGGGTCTATGGGAACTGGTGGTG AAGCCTGCATGGCCGGTTCGAGCGAAGACGAATAGACCGGATGGATCGTACGCTACGTCGGATCTCTTCGAGCCG CATCCTCATCGATCCGGATTATGGCGTCATCACAGCAGAGCCGACGGCCAGATGACGCTGCTCAACGGAAAGAAG TTCGATCCTGCTCCCATGGAAGCCGATATCCTCGCCTCGACCCATAATCTTCTCCGAGACGTCCTCATCTTCGGC GAGGGTAGAGACTATCCCGGCCTTCTCCTCTTCCCCCTTTCAAACCAAGACGACGACGTAAGCGAAAAGCTATGG CCGGAGATCGAAAGGGTCAACGCCACGACAGCAAGCCACGCTCGCATCACGAAACCGATGCTCATCGTCATCCCC GACGAAGAGATCCCCCTTCCGAAAAGCAGCAAAGGCAGCATCCTTCGCCACCAAGCACAAGAGAAATACGCCAGC GTCATCGACTCGGCCTACCGGGTTGTCGTTGCCTCGCCAGCCGTTCTCGTGCCGGATGGAGAGGTCCTCCCCATC GTCTTGGATTGCTTCCGCCGAGTTCTCGCCCGGACGATACATCAGGATGACGATCTGTTTCGTCAGGGCGTCGAC TCCATTGCCTGCATTCAGGTGAGGAACCTGCTGCAAGCCGCCAGCCTCACCCGTAGAGAGCTGCCCCCCAACGTG ATATACGACACCGGGACGGTAACGCGCCTCGTGTCCTATATCCTCCGTCTTCGAAACGGACAGGATGGGAGCGGG GAGGAAGATGAGGAAGCTTGCATCATGAACCGCCTCGTCAACAGATACACCATGTTCCCTCATCTCGACTTCGTC CCCCGCAACCAGCGACCAACATCCATCGTCCTCACCGGCGCAACGGGCTTCATGGGAGCGCGCGTCCTGCGACAA CTCCTCCAAAACACCAGCGTCAACAAGGTCTACTGCCTGGTCCGCGCAACGACACGACACGAAGCCCTCGAGCGG GTAAAGCGATCCCTACGAGTCCTCGGCCCCGACTGCGAATCCCCCAAGCTCGCCTGTCTCCCCTACAACCTCTCC ATCACGGAGCTGGGCCTCTCCGGGACGGACGAGCTTCTCCTGACCCGCGAGGCAACAGTCTACATCCACCTAGCC TGGGCCGTCAACTTCGGCCTCAACCTCTCCTCCTTCGAACACCACATATCCGGAACACACCACCTCCTAACCCTC TCAGCGAAAAGCCGAGCCTCCTTCTTCTTCATAAGCTCCACAGCTGCAGTCCTTCGTTCCTCCAACGTGCCCATC CCCGAAACCCCCTCGGAAGACGCGACCGAGGCCTCGCCGCTGGGATACGGCAGGTCGAAATGGGTAGCAGAGCGT GTCTGCGCGGTTGCGAATCGGCTCTACGCTTCTTCTGCGCCCGTCTCCGTCATCCGAGTGGGCCAGCTCTGCGGC GATGAAGACGGCGTGTGGAATGCCAGCGAGGCTTTCCCCCTGATGCTCTCCACGGCGAGCGTTGCTGGCTGTCTG CCTGATCTCCCGGGGGAGGTCCTCAACTGGCTCCCCGTTGAACAAGCCGCGCGAGCAGTCACGGAGATTGCTCTC TCGTCTCATCCTGTTGACAAGATGGAGTACGGCTCGCAGACGGGAACCCTAGTCTACCATGTCCTCAACCCTTCC CCTTGGCCGACATGGAAACAACTCCTGCAGTGGGTTTCCGAAGAAGAAGGCGGACCTTGTTTCCAAATCGTCTCG CCCAAGACCTGGCTCTCTCGTCTGGAGGAGGCCTTGAAATGCAAGAGACCATCCGGCCATCCAGCAGAGCCGCTC CTCGAGGTCTGGAAGAACAGCTACAGCGAGGTCGACCGAGATCCCAGACCAACGTTCCCCGAGTTCGACATCGAG CGGAGCCAGCGGATGTCGGCGACCCTGCGACTTGTCGGCCCGTTGAGTCGGGAGCGCGTCATCAAGTTGTGGAGG TGGATACAATGCGTCGACCTTGGTCGAGTTCAAGCCACGGACAATAATCATGAGCACACGTATCTATGTATAAAC CAAAGATAG |
| Gene | >Ophcf2|03737 ATGCCCATGACGGCAAGAAACGTCATGCAGGCCGTTCAGACCGCCCGGCTTACAAGCCCCGTCCCCGTCTCCTAC TTCTCATCAGTACCCTTCGTCCTCCAGAGACTGGCCGAAGACGATGGCGGCGTCGACATGCTCCGCTCCATGACA ATCGTCTCCTTCGGCGGCGCGGCCCTCCCCGTCTCGGTGGGAGACGCCCTCGTCGAAGCAGGGGTGCACCTCTCC TCACGCTTCGGCAGCGCCGAGTCGGGCTTCCTCATGTCGTCTCATCGCGACTACGCCGTCGATGACGAGTGGCAG TATCTCCGTCCCGTGCAGGACGAGAAGCTCCTGTCGTTTGAACCGCGGGGACGGGGTCTATGGGAACTGGTGGTG AAGCCTGCATGGCCGGTTCGAGCGAAGACGAATAGACCGGATGGATCGTACGCTACGTCGGATCTCTTCGAGCCG CATCCTCATCGATCCGGATTATGGCGTCATCACAGCAGAGCCGACGGCCAGATGACGCTGCTCAACGGAAAGAAG TTCGATCCTGCTCCCATGGAAGCCGATATCCTCGCCTCGACCCATAATCTTCTCCGAGACGTCCTCATCTTCGGC GAGGGTAGAGACTATCCCGGCCTTCTCCTCTTCCCCCTTTCAAACCAAGACGACGACGTAAGCGAAAAGCTATGG CCGGAGATCGAAAGGGTCAACGCCACGACAGCAAGCCACGCTCGCATCACGAAACCGATGCTCATCGTCATCCCC GACGAAGAGATCCCCCTTCCGAAAAGCAGCAAAGGCAGCATCCTTCGCCACCAAGCACAAGAGAAATACGCCAGC GTCATCGACTCGGCCTACCGGGTTGTCGTTGCCTCGCCAGCCGTTCTCGTGCCGGATGGAGAGGTCCTCCCCATC GTCTTGGATTGCTTCCGCCGAGTTCTCGCCCGGACGATACATCAGGATGACGATCTGTTTCGTCAGGGCGTCGAC TCCATTGCCTGCATTCAGGTGAGGAACCTGCTGCAAGCCGCCAGCCTCACCCGTAGAGAGCTGCCCCCCAACGTG ATATACGACACCGGGACGGTAACGCGCCTCGTGTCCTATATCCTCCGTCTTCGAAACGGACAGGATGGGAGCGGG GAGGAAGATGAGGAAGCTTGCATCATGAACCGCCTCGTCAACAGATACACCATGTTCCCTCATCTCGACTTCGTC CCCCGCAACCAGCGACCAACATCCATCGTCCTCACCGGCGCAACGGGCTTCATGGGAGCGCGCGTCCTGCGACAA CTCCTCCAAAACACCAGCGTCAACAAGGTCTACTGCCTGGTCCGCGCAACGACACGACACGAAGCCCTCGAGCGG GTAAAGCGATCCCTACGAGTCCTCGGCCCCGACTGCGAATCCCCCAAGCTCGCCTGTCTCCCCTACAACCTCTCC ATCACGGAGCTGGGCCTCTCCGGGACGGACGAGCTTCTCCTGACCCGCGAGGCAACAGTCTACATCCACCTAGCC TGGGCCGTCAACTTCGGCCTCAACCTCTCCTCCTTCGAACACCACATATCCGGAACACACCACCTCCTAACCCTC TCAGCGAAAAGCCGAGCCTCCTTCTTCTTCATAAGCTCCACAGCTGCAGTCCTTCGTTCCTCCAACGTGCCCATC CCCGAAACCCCCTCGGAAGACGCGACCGAGGCCTCGCCGCTGGGATACGGCAGGTCGAAATGGGTAGCAGAGCGT GTCTGCGCGGTTGCGAATCGGCTCTACGCTTCTTCTGCGCCCGTCTCCGTCATCCGAGTGGGCCAGCTCTGCGGC GATGAAGACGGCGTGTGGAATGCCAGCGAGGCTTTCCCCCTGATGCTCTCCACGGCGAGCGTTGCTGGCTGTCTG CCTGATCTCCCGGGGGAGGTCCTCAACTGGCTCCCCGTTGAACAAGCCGCGCGAGCAGTCACGGAGATTGCTCTC TCGTCTCATCCTGTTGACAAGATGGAGTACGGCTCGCAGACGGGAACCCTAGTCTACCATGTCCTCAACCCTTCC CCTTGGCCGACATGGAAACAACTCCTGCAGTGGGTTTCCGAAGAAGAAGGCGGACCTTGTTTCCAAATCGTCTCG CCCAAGACCTGGCTCTCTCGTCTGGAGGAGGCCTTGAAATGCAAGAGACCATCCGGCCATCCAGCAGAGCCGCTC CTCGAGGTCTGGAAGAACAGCTACAGCGAGGTCGACCGAGATCCCAGACCAACGTTCCCCGAGTTCGACATCGAG CGGAGCCAGCGGATGTCGGCGACCCTGCGACTTGTCGGCCCGTTGAGTCGGGAGCGCGTCATCAAGTTGTGGAGG TGGATACAATGCGTCGACCTTGGTCGAGTTCAAGCCACGGACAATAATCATGAGCACACGTATCTATGTATAAAC CAAAGATAG |