© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03730 |
| Gene name | |
| Location | scaffold_03:3661739..3663236 |
| Strand | - |
| Gene length (bp) | 1497 |
| Transcript length (bp) | 1497 |
| Coding sequence length (bp) | 1497 |
| Protein length (aa) | 499 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 9.9E-53 | 29 | 467 |
| PF00324 | AA_permease | Amino acid permease | 1.3E-22 | 43 | 479 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 40 | 19 |
| 2 | 60 | 82 | 22 |
| 3 | 103 | 125 | 22 |
| 4 | 145 | 167 | 22 |
| 5 | 176 | 198 | 22 |
| 6 | 224 | 246 | 22 |
| 7 | 259 | 281 | 22 |
| 8 | 308 | 330 | 22 |
| 9 | 364 | 386 | 22 |
| 10 | 390 | 412 | 22 |
| 11 | 425 | 447 | 22 |
| 12 | 462 | 481 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03730 MTTKPPPVNASGHAQDLPRRFNLLALTGVGLVVGNVWPAVGGSLVVAISNGGPPGVLYEFIAVSVCYVAVAASIG ELASAVPSSAGVYHWASLTPGGRAGRPVGFLAGWWNYLAWILGTASMTAIFGNGAVQMYVATHPGFKPEAWHVLV AYLICTWASCLAVCIVSKAMPTLNKLGGYAIVVFFVITVVVVAVMPGLPGHSGHASSANVWSQWTTWTSYPPGFV FLSGMLNGAYGVGAVDAVSHLAEEIPDPERNVPLALALQVSIGFVTGFLYLVAILYSLHDLDALRDSPYPIADIY RQATGSQAAVAGLLSMIVIIIGVTVLGAQITCGRTLWTLARDGASPFPASLSRTNKTFQVPVNATVVSAVLLTAL GVLYIGSTTAFNAFAGSFVLLSSSSYVACILPHLLTGRKNVPLGPFRMRGAWGYVVNAFSCLYMIVFGVVYCFPP NVPTDAKSMNYTSLIWGGSTILIVLFWLVVARRGYRGPRLVRHALCAE* |
| Coding | >Ophcf2|03730 ATGACCACCAAACCCCCCCCCGTCAACGCCTCAGGCCACGCCCAAGACCTCCCCCGACGCTTCAACCTCCTCGCC CTAACAGGCGTGGGCCTCGTCGTCGGAAACGTCTGGCCCGCTGTCGGAGGCTCCCTCGTCGTCGCCATCTCCAAC GGCGGGCCTCCGGGGGTGCTGTACGAGTTCATCGCCGTCTCCGTCTGCTATGTCGCCGTGGCAGCCAGTATCGGC GAGCTGGCTAGTGCTGTACCCTCCTCCGCCGGCGTCTATCACTGGGCTTCCCTCACGCCAGGGGGGAGAGCGGGA AGGCCGGTGGGTTTCCTGGCTGGCTGGTGGAATTATCTGGCTTGGATTCTCGGTACGGCCAGCATGACGGCCATC TTTGGCAATGGTGCGGTGCAGATGTATGTTGCCACGCATCCCGGCTTCAAGCCCGAGGCCTGGCACGTCCTCGTT GCCTATCTGATCTGCACCTGGGCTTCTTGTCTCGCCGTCTGCATCGTCAGCAAGGCAATGCCGACGCTAAACAAG CTGGGGGGATACGCCATCGTCGTCTTCTTCGTCATCACTGTTGTTGTCGTCGCCGTCATGCCCGGGCTTCCAGGA CACAGCGGACACGCTTCGTCGGCTAACGTCTGGTCCCAGTGGACGACTTGGACATCTTACCCTCCGGGCTTCGTC TTCCTCTCCGGCATGCTCAACGGGGCCTATGGCGTCGGTGCCGTCGACGCCGTCAGCCATCTCGCCGAGGAGATT CCCGACCCGGAGCGTAACGTGCCCCTGGCTCTGGCTCTGCAGGTGTCCATCGGCTTCGTCACGGGCTTCTTATAT CTGGTAGCCATCCTATACAGCCTTCACGACTTGGACGCCCTGCGAGATTCTCCCTACCCCATCGCCGACATCTAC CGTCAAGCCACTGGCTCGCAGGCGGCCGTCGCTGGTCTGCTGTCCATGATAGTCATCATCATCGGCGTCACCGTC CTGGGCGCCCAGATAACCTGCGGACGGACGCTGTGGACGCTGGCCCGAGACGGGGCCTCGCCCTTTCCAGCCAGC CTCTCGCGGACGAACAAGACGTTCCAAGTCCCTGTCAACGCCACCGTCGTCTCGGCCGTCCTGTTGACCGCCCTC GGCGTTCTCTATATCGGCAGCACGACGGCCTTTAACGCGTTTGCCGGCAGCTTCGTCTTGCTCTCCAGCAGCTCG TACGTCGCCTGTATCCTGCCTCATCTCCTGACGGGGCGAAAGAATGTCCCCTTGGGTCCGTTCAGGATGCGTGGA GCATGGGGTTACGTGGTTAATGCCTTCTCGTGCCTGTACATGATTGTCTTTGGTGTCGTTTACTGTTTCCCACCC AACGTACCGACGGATGCCAAGAGCATGAACTACACCAGCCTCATCTGGGGTGGCTCCACCATCCTGATCGTCCTG TTTTGGCTCGTGGTGGCGAGAAGAGGGTATCGAGGCCCCAGACTGGTGAGACACGCCCTTTGCGCAGAATGA |
| Transcript | >Ophcf2|03730 ATGACCACCAAACCCCCCCCCGTCAACGCCTCAGGCCACGCCCAAGACCTCCCCCGACGCTTCAACCTCCTCGCC CTAACAGGCGTGGGCCTCGTCGTCGGAAACGTCTGGCCCGCTGTCGGAGGCTCCCTCGTCGTCGCCATCTCCAAC GGCGGGCCTCCGGGGGTGCTGTACGAGTTCATCGCCGTCTCCGTCTGCTATGTCGCCGTGGCAGCCAGTATCGGC GAGCTGGCTAGTGCTGTACCCTCCTCCGCCGGCGTCTATCACTGGGCTTCCCTCACGCCAGGGGGGAGAGCGGGA AGGCCGGTGGGTTTCCTGGCTGGCTGGTGGAATTATCTGGCTTGGATTCTCGGTACGGCCAGCATGACGGCCATC TTTGGCAATGGTGCGGTGCAGATGTATGTTGCCACGCATCCCGGCTTCAAGCCCGAGGCCTGGCACGTCCTCGTT GCCTATCTGATCTGCACCTGGGCTTCTTGTCTCGCCGTCTGCATCGTCAGCAAGGCAATGCCGACGCTAAACAAG CTGGGGGGATACGCCATCGTCGTCTTCTTCGTCATCACTGTTGTTGTCGTCGCCGTCATGCCCGGGCTTCCAGGA CACAGCGGACACGCTTCGTCGGCTAACGTCTGGTCCCAGTGGACGACTTGGACATCTTACCCTCCGGGCTTCGTC TTCCTCTCCGGCATGCTCAACGGGGCCTATGGCGTCGGTGCCGTCGACGCCGTCAGCCATCTCGCCGAGGAGATT CCCGACCCGGAGCGTAACGTGCCCCTGGCTCTGGCTCTGCAGGTGTCCATCGGCTTCGTCACGGGCTTCTTATAT CTGGTAGCCATCCTATACAGCCTTCACGACTTGGACGCCCTGCGAGATTCTCCCTACCCCATCGCCGACATCTAC CGTCAAGCCACTGGCTCGCAGGCGGCCGTCGCTGGTCTGCTGTCCATGATAGTCATCATCATCGGCGTCACCGTC CTGGGCGCCCAGATAACCTGCGGACGGACGCTGTGGACGCTGGCCCGAGACGGGGCCTCGCCCTTTCCAGCCAGC CTCTCGCGGACGAACAAGACGTTCCAAGTCCCTGTCAACGCCACCGTCGTCTCGGCCGTCCTGTTGACCGCCCTC GGCGTTCTCTATATCGGCAGCACGACGGCCTTTAACGCGTTTGCCGGCAGCTTCGTCTTGCTCTCCAGCAGCTCG TACGTCGCCTGTATCCTGCCTCATCTCCTGACGGGGCGAAAGAATGTCCCCTTGGGTCCGTTCAGGATGCGTGGA GCATGGGGTTACGTGGTTAATGCCTTCTCGTGCCTGTACATGATTGTCTTTGGTGTCGTTTACTGTTTCCCACCC AACGTACCGACGGATGCCAAGAGCATGAACTACACCAGCCTCATCTGGGGTGGCTCCACCATCCTGATCGTCCTG TTTTGGCTCGTGGTGGCGAGAAGAGGGTATCGAGGCCCCAGACTGGTGAGACACGCCCTTTGCGCAGAATGA |
| Gene | >Ophcf2|03730 ATGACCACCAAACCCCCCCCCGTCAACGCCTCAGGCCACGCCCAAGACCTCCCCCGACGCTTCAACCTCCTCGCC CTAACAGGCGTGGGCCTCGTCGTCGGAAACGTCTGGCCCGCTGTCGGAGGCTCCCTCGTCGTCGCCATCTCCAAC GGCGGGCCTCCGGGGGTGCTGTACGAGTTCATCGCCGTCTCCGTCTGCTATGTCGCCGTGGCAGCCAGTATCGGC GAGCTGGCTAGTGCTGTACCCTCCTCCGCCGGCGTCTATCACTGGGCTTCCCTCACGCCAGGGGGGAGAGCGGGA AGGCCGGTGGGTTTCCTGGCTGGCTGGTGGAATTATCTGGCTTGGATTCTCGGTACGGCCAGCATGACGGCCATC TTTGGCAATGGTGCGGTGCAGATGTATGTTGCCACGCATCCCGGCTTCAAGCCCGAGGCCTGGCACGTCCTCGTT GCCTATCTGATCTGCACCTGGGCTTCTTGTCTCGCCGTCTGCATCGTCAGCAAGGCAATGCCGACGCTAAACAAG CTGGGGGGATACGCCATCGTCGTCTTCTTCGTCATCACTGTTGTTGTCGTCGCCGTCATGCCCGGGCTTCCAGGA CACAGCGGACACGCTTCGTCGGCTAACGTCTGGTCCCAGTGGACGACTTGGACATCTTACCCTCCGGGCTTCGTC TTCCTCTCCGGCATGCTCAACGGGGCCTATGGCGTCGGTGCCGTCGACGCCGTCAGCCATCTCGCCGAGGAGATT CCCGACCCGGAGCGTAACGTGCCCCTGGCTCTGGCTCTGCAGGTGTCCATCGGCTTCGTCACGGGCTTCTTATAT CTGGTAGCCATCCTATACAGCCTTCACGACTTGGACGCCCTGCGAGATTCTCCCTACCCCATCGCCGACATCTAC CGTCAAGCCACTGGCTCGCAGGCGGCCGTCGCTGGTCTGCTGTCCATGATAGTCATCATCATCGGCGTCACCGTC CTGGGCGCCCAGATAACCTGCGGACGGACGCTGTGGACGCTGGCCCGAGACGGGGCCTCGCCCTTTCCAGCCAGC CTCTCGCGGACGAACAAGACGTTCCAAGTCCCTGTCAACGCCACCGTCGTCTCGGCCGTCCTGTTGACCGCCCTC GGCGTTCTCTATATCGGCAGCACGACGGCCTTTAACGCGTTTGCCGGCAGCTTCGTCTTGCTCTCCAGCAGCTCG TACGTCGCCTGTATCCTGCCTCATCTCCTGACGGGGCGAAAGAATGTCCCCTTGGGTCCGTTCAGGATGCGTGGA GCATGGGGTTACGTGGTTAATGCCTTCTCGTGCCTGTACATGATTGTCTTTGGTGTCGTTTACTGTTTCCCACCC AACGTACCGACGGATGCCAAGAGCATGAACTACACCAGCCTCATCTGGGGTGGCTCCACCATCCTGATCGTCCTG TTTTGGCTCGTGGTGGCGAGAAGAGGGTATCGAGGCCCCAGACTGGTGAGACACGCCCTTTGCGCAGAATGA |