© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03728 |
| Gene name | |
| Location | scaffold_03:3658485..3659629 |
| Strand | + |
| Gene length (bp) | 1144 |
| Transcript length (bp) | 951 |
| Coding sequence length (bp) | 951 |
| Protein length (aa) | 317 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02737 | 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | 5.4E-41 | 5 | 181 |
| PF00725 | 3HCDH | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | 2.5E-08 | 186 | 275 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006631 | fatty acid metabolic process | Yes |
| GO:0070403 | NAD+ binding | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0051287 | NAD binding | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032787 | monocarboxylic acid metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Peroxisome | Peroxisomal targeting signal | 0.7467 | 0.3579 | 0.0104 | 0.1014 | 0.3365 | 0.1015 | 0.0818 | 0.0914 | 0.0725 | 0.8594 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5873 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03728 MAIRTVGVIGTGVIGSSWIGLFLAHGFRVLVSDPASGAEEKLEEYLKSIWPTLKDIGLASGASLSNYTFVGAAMD KHYHEVDFVQENAPERVDLKTKLLGEIDAGTRPDVVIASSSSGIPSSQFISQCAKNPGRVLIGHPFNPPHLMKLV EVVPHPKTDKAMIEEAMSFYRSLGRHPVHLRQEVPGFAANRLQAALCSEAYSLVSRGILSAEDLDACVTNSLGPR WAVVGPMMANAMGGGGGSEGFRHLLEHLGPATLEWKKDMDKHAFQWNKAGIDALADSVAKELEGKSVDEVAEKRD KQLVQLFRIKDGKTSG* |
| Coding | >Ophcf2|03728 ATGGCTATTCGAACTGTGGGCGTCATAGGCACCGGAGTGATTGGGTCTTCCTGGATAGGACTCTTTCTGGCCCAT GGGTTTCGAGTTCTGGTCTCGGACCCGGCTTCCGGCGCCGAAGAGAAGCTGGAAGAGTACCTCAAGAGCATCTGG CCTACGCTGAAGGACATTGGGCTGGCTTCCGGGGCGTCGCTGTCAAACTATACCTTTGTTGGTGCCGCTATGGAC AAGCATTACCACGAGGTCGATTTTGTTCAAGAGAATGCGCCGGAACGCGTGGACCTGAAGACCAAGCTCCTGGGC GAGATCGACGCCGGCACACGACCAGATGTAGTGATAGCCTCATCGTCATCCGGCATTCCAAGCTCTCAGTTCATC TCTCAATGCGCCAAGAATCCTGGCCGTGTTCTCATCGGCCATCCGTTCAACCCACCTCATCTCATGAAGCTGGTC GAGGTCGTCCCACATCCCAAGACGGACAAGGCCATGATTGAGGAAGCCATGAGCTTTTACCGCTCTCTCGGTCGT CACCCTGTTCACCTTCGGCAAGAGGTCCCTGGCTTTGCTGCCAACCGACTTCAGGCCGCTCTCTGCTCGGAAGCG TATAGCTTAGTTAGTCGGGGCATTCTTTCTGCTGAGGACCTCGATGCCTGTGTTACCAACAGCCTCGGACCTCGC TGGGCGGTGGTAGGCCCTATGATGGCAAACGCCATGGGCGGAGGCGGTGGCTCCGAAGGCTTCAGGCATCTTTTG GAGCACCTTGGTCCCGCGACGCTGGAATGGAAGAAGGATATGGACAAGCATGCTTTCCAGTGGAATAAGGCGGGT ATTGATGCGCTGGCCGATAGCGTTGCGAAGGAGCTCGAGGGGAAGAGTGTGGATGAGGTCGCGGAGAAGCGGGAT AAACAGCTTGTTCAGCTGTTCCGTATCAAGGATGGGAAAACGTCTGGTTAG |
| Transcript | >Ophcf2|03728 ATGGCTATTCGAACTGTGGGCGTCATAGGCACCGGAGTGATTGGGTCTTCCTGGATAGGACTCTTTCTGGCCCAT GGGTTTCGAGTTCTGGTCTCGGACCCGGCTTCCGGCGCCGAAGAGAAGCTGGAAGAGTACCTCAAGAGCATCTGG CCTACGCTGAAGGACATTGGGCTGGCTTCCGGGGCGTCGCTGTCAAACTATACCTTTGTTGGTGCCGCTATGGAC AAGCATTACCACGAGGTCGATTTTGTTCAAGAGAATGCGCCGGAACGCGTGGACCTGAAGACCAAGCTCCTGGGC GAGATCGACGCCGGCACACGACCAGATGTAGTGATAGCCTCATCGTCATCCGGCATTCCAAGCTCTCAGTTCATC TCTCAATGCGCCAAGAATCCTGGCCGTGTTCTCATCGGCCATCCGTTCAACCCACCTCATCTCATGAAGCTGGTC GAGGTCGTCCCACATCCCAAGACGGACAAGGCCATGATTGAGGAAGCCATGAGCTTTTACCGCTCTCTCGGTCGT CACCCTGTTCACCTTCGGCAAGAGGTCCCTGGCTTTGCTGCCAACCGACTTCAGGCCGCTCTCTGCTCGGAAGCG TATAGCTTAGTTAGTCGGGGCATTCTTTCTGCTGAGGACCTCGATGCCTGTGTTACCAACAGCCTCGGACCTCGC TGGGCGGTGGTAGGCCCTATGATGGCAAACGCCATGGGCGGAGGCGGTGGCTCCGAAGGCTTCAGGCATCTTTTG GAGCACCTTGGTCCCGCGACGCTGGAATGGAAGAAGGATATGGACAAGCATGCTTTCCAGTGGAATAAGGCGGGT ATTGATGCGCTGGCCGATAGCGTTGCGAAGGAGCTCGAGGGGAAGAGTGTGGATGAGGTCGCGGAGAAGCGGGAT AAACAGCTTGTTCAGCTGTTCCGTATCAAGGATGGGAAAACGTCTGGTTAG |
| Gene | >Ophcf2|03728 ATGGCTATTCGAACTGTGGGCGTCATAGGCACCGGAGTGATTGGGTCTTCCTGGATAGGACTCTTTCTGGCCCAT GGGTTTCGAGTTCTGGTCTCGGACCCGGCTTCCGGCGCCGAAGAGAAGCTGGAAGAGTACCTCAAGAGCATCTGG CCTACGCTGAAGGACATTGGGCTGGCTTCCGGGGCGTCGCTGTCAAACTATACCTTTGTTGGTGCCGCTATGGAC AAGCATTACCACGAGGTCGATTTTGTTCAAGAGGTGAGCAATCATTCGGTTGACTGGTATGGCCGTTTGTCTGTA CCGAGTGAGATGCACGAGAGCGGCTTCATGCAGAGAACCAGCCGTATGTATGACGTTGTTCTGACAATCACCTCC AGAATGCGCCGGAACGCGTGGACCTGAAGACCAAGCTCCTGGGCGAGATCGACGCCGGCACACGACCAGATGTAG TGATAGCCTCATCGTCATCCGGCATTCCAAGCTCTCAGTTCATCTCTCAATGCGCCAAGAATCCTGGCCGTGTTC TCATCGGCCATCCGTTCAACCCACCTCATCTCATGAAGCTGGTCGAGGTCGTCCCACATCCCAAGACGGACAAGG CCATGATTGAGGAAGCCATGAGCTTTTACCGCTCTCTCGGTCGTCACCCTGTTCACCTTCGGCAAGAGGTCCCTG GCTTTGCTGCCAACCGACTTCAGGCCGCTCTCTGCTCGGAAGCGTATAGCTTAGTTAGTCGGGGCATTCTTTCTG CTGAGGACCTCGGTGAGTACATTTTTCCGCCGACTGCGTTGTGATACCTCCATGTTTCACTTCATACGCGGCTAA TAACTCCTCAGATGCCTGTGTTACCAACAGCCTCGGACCTCGCTGGGCGGTGGTAGGCCCTATGATGGCAAACGC CATGGGCGGAGGCGGTGGCTCCGAAGGCTTCAGGCATCTTTTGGAGCACCTTGGTCCCGCGACGCTGGAATGGAA GAAGGATATGGACAAGCATGCTTTCCAGTGGAATAAGGCGGGTATTGATGCGCTGGCCGATAGCGTTGCGAAGGA GCTCGAGGGGAAGAGTGTGGATGAGGTCGCGGAGAAGCGGGATAAACAGCTTGTTCAGCTGTTCCGTATCAAGGA TGGGAAAACGTCTGGTTAG |