© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|03692 |
| Gene name | |
| Location | scaffold_03:3560140..3561310 |
| Strand | + |
| Gene length (bp) | 1170 |
| Transcript length (bp) | 1170 |
| Coding sequence length (bp) | 1170 |
| Protein length (aa) | 390 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 2.6E-43 | 169 | 301 |
| PF17862 | AAA_lid_3 | AAA+ lid domain | 2.5E-13 | 325 | 367 |
| PF07728 | AAA_5 | AAA domain (dynein-related subfamily) | 1.1E-06 | 168 | 289 |
| PF16450 | Prot_ATP_ID_OB | Proteasomal ATPase OB C-terminal domain | 1.2E-06 | 56 | 104 |
| PF07724 | AAA_2 | AAA domain (Cdc48 subfamily) | 1.2E-06 | 169 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0003824 | catalytic activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03692 MALDAYYHNKIEAMKLEILKGQAALRRLEAQRNDYNSRVRLLREELGLLQQPGSYVGEVVKVMSTKKILVKVHPE GKYVVDISDSVDVSKLTPGKRVTLLSDSYKLEKLLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEIKEVIEL GLKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTACKFIRVSGSELVQKYIGEGSRMVRELFIMAREHA PSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKNIKVIMATNRLDILDPALLRPGRIDRKIEF PPPSVEARADILRIHSRKMNLTRGINLTKIAEKMSGCSGAELKGVCTEAGMYALRERRVHVTQEDFELATAKILN KHDDKEVSLGKLWK* |
| Coding | >Ophcf2|03692 ATGGCGCTCGACGCTTACTATCACAACAAGATCGAGGCCATGAAGCTCGAGATCCTCAAGGGTCAGGCTGCTCTT CGAAGGCTTGAGGCCCAGCGCAACGACTACAACTCCCGCGTCCGGTTACTCCGCGAGGAGCTTGGCCTTCTGCAG CAGCCGGGATCGTACGTCGGCGAAGTGGTCAAGGTTATGAGCACCAAGAAGATCTTGGTCAAGGTGCATCCCGAG GGCAAATACGTCGTCGACATCTCCGATAGTGTCGATGTCTCCAAGCTTACGCCCGGAAAGCGCGTCACGCTCCTT TCCGATAGCTACAAGCTGGAGAAGCTGCTCCCGTCGTCGGTCGACCCCTTGGTGTCGCTCATGATGGTAGAAAAA GTGCCCGACAGTACCTACGATATGATCGGAGGTCTGGATCAGCAGATCAAAGAGATTAAGGAGGTCATCGAACTC GGCCTCAAACATCCCGAATTATTCGAGTCGCTCGGCATCGCCCAGCCCAAAGGCGTGCTGCTCTACGGCCCGCCC GGGACTGGCAAGACACTGCTGGCTCGGGCCGTCGCCCATCACACGGCCTGCAAGTTCATCCGCGTCTCCGGCTCG GAGCTGGTGCAAAAATACATCGGCGAGGGCAGCCGCATGGTGCGGGAGCTCTTCATCATGGCTCGCGAGCATGCT CCGTCCATCATCTTCATGGACGAGATTGACAGCATCGGCTCCTCCCGCGTCGAGGGCTCCTCCGGCGGCGACTCC GAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTCGAGCCAACTAAAAATATCAAGGTCATC ATGGCCACCAACCGGCTCGACATCCTCGACCCGGCGCTGCTGCGGCCCGGCCGCATCGATCGCAAGATCGAGTTT CCGCCCCCGAGCGTCGAGGCGCGCGCCGACATTTTGCGAATCCACAGCCGCAAGATGAACCTGACACGCGGCATC AACCTCACCAAGATTGCCGAGAAGATGAGCGGCTGCTCCGGCGCCGAGCTCAAGGGCGTCTGCACCGAGGCCGGC ATGTATGCCTTGCGCGAGCGGAGGGTCCACGTCACGCAGGAGGACTTTGAGCTGGCCACGGCCAAGATCCTCAAC AAGCACGACGATAAAGAGGTGTCGCTTGGAAAGCTATGGAAGTAG |
| Transcript | >Ophcf2|03692 ATGGCGCTCGACGCTTACTATCACAACAAGATCGAGGCCATGAAGCTCGAGATCCTCAAGGGTCAGGCTGCTCTT CGAAGGCTTGAGGCCCAGCGCAACGACTACAACTCCCGCGTCCGGTTACTCCGCGAGGAGCTTGGCCTTCTGCAG CAGCCGGGATCGTACGTCGGCGAAGTGGTCAAGGTTATGAGCACCAAGAAGATCTTGGTCAAGGTGCATCCCGAG GGCAAATACGTCGTCGACATCTCCGATAGTGTCGATGTCTCCAAGCTTACGCCCGGAAAGCGCGTCACGCTCCTT TCCGATAGCTACAAGCTGGAGAAGCTGCTCCCGTCGTCGGTCGACCCCTTGGTGTCGCTCATGATGGTAGAAAAA GTGCCCGACAGTACCTACGATATGATCGGAGGTCTGGATCAGCAGATCAAAGAGATTAAGGAGGTCATCGAACTC GGCCTCAAACATCCCGAATTATTCGAGTCGCTCGGCATCGCCCAGCCCAAAGGCGTGCTGCTCTACGGCCCGCCC GGGACTGGCAAGACACTGCTGGCTCGGGCCGTCGCCCATCACACGGCCTGCAAGTTCATCCGCGTCTCCGGCTCG GAGCTGGTGCAAAAATACATCGGCGAGGGCAGCCGCATGGTGCGGGAGCTCTTCATCATGGCTCGCGAGCATGCT CCGTCCATCATCTTCATGGACGAGATTGACAGCATCGGCTCCTCCCGCGTCGAGGGCTCCTCCGGCGGCGACTCC GAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTCGAGCCAACTAAAAATATCAAGGTCATC ATGGCCACCAACCGGCTCGACATCCTCGACCCGGCGCTGCTGCGGCCCGGCCGCATCGATCGCAAGATCGAGTTT CCGCCCCCGAGCGTCGAGGCGCGCGCCGACATTTTGCGAATCCACAGCCGCAAGATGAACCTGACACGCGGCATC AACCTCACCAAGATTGCCGAGAAGATGAGCGGCTGCTCCGGCGCCGAGCTCAAGGGCGTCTGCACCGAGGCCGGC ATGTATGCCTTGCGCGAGCGGAGGGTCCACGTCACGCAGGAGGACTTTGAGCTGGCCACGGCCAAGATCCTCAAC AAGCACGACGATAAAGAGGTGTCGCTTGGAAAGCTATGGAAGTAG |
| Gene | >Ophcf2|03692 ATGGCGCTCGACGCTTACTATCACAACAAGATCGAGGCCATGAAGCTCGAGATCCTCAAGGGTCAGGCTGCTCTT CGAAGGCTTGAGGCCCAGCGCAACGACTACAACTCCCGCGTCCGGTTACTCCGCGAGGAGCTTGGCCTTCTGCAG CAGCCGGGATCGTACGTCGGCGAAGTGGTCAAGGTTATGAGCACCAAGAAGATCTTGGTCAAGGTGCATCCCGAG GGCAAATACGTCGTCGACATCTCCGATAGTGTCGATGTCTCCAAGCTTACGCCCGGAAAGCGCGTCACGCTCCTT TCCGATAGCTACAAGCTGGAGAAGCTGCTCCCGTCGTCGGTCGACCCCTTGGTGTCGCTCATGATGGTAGAAAAA GTGCCCGACAGTACCTACGATATGATCGGAGGTCTGGATCAGCAGATCAAAGAGATTAAGGAGGTCATCGAACTC GGCCTCAAACATCCCGAATTATTCGAGTCGCTCGGCATCGCCCAGCCCAAAGGCGTGCTGCTCTACGGCCCGCCC GGGACTGGCAAGACACTGCTGGCTCGGGCCGTCGCCCATCACACGGCCTGCAAGTTCATCCGCGTCTCCGGCTCG GAGCTGGTGCAAAAATACATCGGCGAGGGCAGCCGCATGGTGCGGGAGCTCTTCATCATGGCTCGCGAGCATGCT CCGTCCATCATCTTCATGGACGAGATTGACAGCATCGGCTCCTCCCGCGTCGAGGGCTCCTCCGGCGGCGACTCC GAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTCGAGCCAACTAAAAATATCAAGGTCATC ATGGCCACCAACCGGCTCGACATCCTCGACCCGGCGCTGCTGCGGCCCGGCCGCATCGATCGCAAGATCGAGTTT CCGCCCCCGAGCGTCGAGGCGCGCGCCGACATTTTGCGAATCCACAGCCGCAAGATGAACCTGACACGCGGCATC AACCTCACCAAGATTGCCGAGAAGATGAGCGGCTGCTCCGGCGCCGAGCTCAAGGGCGTCTGCACCGAGGCCGGC ATGTATGCCTTGCGCGAGCGGAGGGTCCACGTCACGCAGGAGGACTTTGAGCTGGCCACGGCCAAGATCCTCAAC AAGCACGACGATAAAGAGGTGTCGCTTGGAAAGCTATGGAAGTAG |