Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophcf2\|03689
Gene name
Location	scaffold_03:3550400..3551840
Strand	+
Gene length (bp)	1440
Transcript length (bp)	1440
Coding sequence length (bp)	1440
Protein length (aa)	480

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00561	Abhydrolase_1	alpha/beta hydrolase fold	5.0E-07	250	365

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Fungus	Fungus in pure culture	27.35	14.11	40.60
Alive	In ants, during behavior modification	31.72	14.26	49.17
Dead	In ants, recently dead	27.52	13.84	41.20

Differential expression

Label1	Label2	Q-value	Significant difference
Alive	Fungus	0.569918	no
Alive	Dead	0.524083	no
Dead	Fungus	0.984770	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophcf2\|03689 MPRPGLLHVATTPPPLPPYTDWYNNEHGPARLRHPLITTGHRYMATDDQTPSYLAIYTVPDLSALSTSQSYARLR THRSDREEALIKRVNPHRQLLDLIFEKQTDIPSKDPPFIVSIPYNHLPDPQTWFDGPTPQPKSWLRTRLFHDRES NTALAIHDFSSPPPASDFSAPGTRIWSLLYIFGSAPRDLAVLAAEPRPPAWSDGEMTTTTPGDDASIVSYVSAAD GLVIPYRLEGNPSPNAPVIAMSNSLLTSLEMWDPLVKLIRKHRPDLAILRYDFRGRHSIPSSSPPVTVGLLASDL CSVLDALRIHRLHALIGVSLGGVTALRFAQLHPNRLERLIGCDFNPVSTPSNAQAWRDRAATPLPTLADQTVVRW LHPRNASIAPWLLSIIKANDPVSFRAASEALHDYDLRPAAPDCSVPALLVVGDVDAKGAMHAAMADFAPKLGPGG ATLRVISEAGHVPMCEDPEAFWDAIGDFL*
Coding	>Ophcf2\|03689 ATGCCCCGTCCAGGCCTCCTCCACGTAGCCACAACTCCCCCCCCCCTTCCCCCCTACACAGACTGGTACAACAAC GAACACGGCCCTGCCCGCCTCCGCCACCCCCTCATAACCACCGGCCACCGCTACATGGCAACAGACGACCAAACC CCTTCCTACCTCGCAATCTACACCGTTCCCGACCTCTCCGCCCTATCCACCTCTCAAAGCTACGCCCGCCTCCGA ACGCACCGCTCAGACAGAGAAGAAGCACTTATCAAGAGAGTCAACCCCCACCGCCAACTCCTTGACCTCATCTTC GAGAAGCAAACAGACATCCCATCGAAAGACCCCCCCTTCATCGTCTCCATCCCTTACAACCACCTCCCAGACCCC CAAACCTGGTTCGACGGCCCAACCCCCCAGCCAAAATCCTGGCTCCGAACACGACTCTTCCACGACCGCGAATCA AACACCGCCCTCGCCATCCATGACTTCTCAAGCCCGCCCCCGGCATCCGACTTCTCCGCGCCAGGCACGCGCATC TGGTCTCTCCTCTACATCTTTGGATCTGCGCCGCGGGATCTCGCGGTGCTGGCTGCTGAGCCCAGACCGCCTGCC TGGTCAGATGGAGAGATGACGACGACGACGCCAGGTGATGATGCCTCCATCGTCTCGTACGTCTCTGCTGCGGAC GGACTCGTCATCCCCTACAGACTTGAAGGCAATCCCTCTCCCAACGCACCCGTCATCGCCATGAGCAACTCCCTC CTCACCTCGCTCGAGATGTGGGATCCCCTCGTCAAGCTCATCCGCAAGCACCGTCCCGACCTCGCCATCCTCCGC TACGACTTTCGAGGCCGCCACTCCATCCCCTCTTCCTCCCCTCCCGTAACCGTCGGCCTCCTAGCCTCCGATCTG TGCTCCGTCCTTGACGCCCTGCGGATCCATCGTCTCCACGCCCTCATCGGCGTCTCCCTCGGCGGCGTAACCGCC CTTCGCTTCGCCCAACTTCACCCGAATCGCCTCGAGCGTCTCATAGGATGCGACTTCAACCCCGTCTCTACACCG TCCAACGCCCAAGCCTGGAGAGACCGCGCGGCCACGCCGCTTCCAACGCTGGCAGATCAAACCGTCGTCCGCTGG TTACACCCGCGCAACGCCTCCATCGCCCCCTGGCTCCTCTCCATAATCAAGGCAAACGACCCGGTCAGCTTCCGT GCCGCGTCCGAGGCCCTTCACGATTACGACCTCCGGCCCGCCGCTCCGGACTGCTCCGTTCCCGCTCTGCTCGTC GTGGGGGACGTCGATGCAAAGGGCGCTATGCATGCTGCCATGGCCGACTTCGCCCCTAAACTGGGGCCTGGAGGT GCGACGCTGCGAGTCATCTCCGAGGCCGGACACGTTCCCATGTGTGAGGATCCCGAGGCTTTTTGGGATGCCATT GGCGATTTTTTGTGA
Transcript	>Ophcf2\|03689 ATGCCCCGTCCAGGCCTCCTCCACGTAGCCACAACTCCCCCCCCCCTTCCCCCCTACACAGACTGGTACAACAAC GAACACGGCCCTGCCCGCCTCCGCCACCCCCTCATAACCACCGGCCACCGCTACATGGCAACAGACGACCAAACC CCTTCCTACCTCGCAATCTACACCGTTCCCGACCTCTCCGCCCTATCCACCTCTCAAAGCTACGCCCGCCTCCGA ACGCACCGCTCAGACAGAGAAGAAGCACTTATCAAGAGAGTCAACCCCCACCGCCAACTCCTTGACCTCATCTTC GAGAAGCAAACAGACATCCCATCGAAAGACCCCCCCTTCATCGTCTCCATCCCTTACAACCACCTCCCAGACCCC CAAACCTGGTTCGACGGCCCAACCCCCCAGCCAAAATCCTGGCTCCGAACACGACTCTTCCACGACCGCGAATCA AACACCGCCCTCGCCATCCATGACTTCTCAAGCCCGCCCCCGGCATCCGACTTCTCCGCGCCAGGCACGCGCATC TGGTCTCTCCTCTACATCTTTGGATCTGCGCCGCGGGATCTCGCGGTGCTGGCTGCTGAGCCCAGACCGCCTGCC TGGTCAGATGGAGAGATGACGACGACGACGCCAGGTGATGATGCCTCCATCGTCTCGTACGTCTCTGCTGCGGAC GGACTCGTCATCCCCTACAGACTTGAAGGCAATCCCTCTCCCAACGCACCCGTCATCGCCATGAGCAACTCCCTC CTCACCTCGCTCGAGATGTGGGATCCCCTCGTCAAGCTCATCCGCAAGCACCGTCCCGACCTCGCCATCCTCCGC TACGACTTTCGAGGCCGCCACTCCATCCCCTCTTCCTCCCCTCCCGTAACCGTCGGCCTCCTAGCCTCCGATCTG TGCTCCGTCCTTGACGCCCTGCGGATCCATCGTCTCCACGCCCTCATCGGCGTCTCCCTCGGCGGCGTAACCGCC CTTCGCTTCGCCCAACTTCACCCGAATCGCCTCGAGCGTCTCATAGGATGCGACTTCAACCCCGTCTCTACACCG TCCAACGCCCAAGCCTGGAGAGACCGCGCGGCCACGCCGCTTCCAACGCTGGCAGATCAAACCGTCGTCCGCTGG TTACACCCGCGCAACGCCTCCATCGCCCCCTGGCTCCTCTCCATAATCAAGGCAAACGACCCGGTCAGCTTCCGT GCCGCGTCCGAGGCCCTTCACGATTACGACCTCCGGCCCGCCGCTCCGGACTGCTCCGTTCCCGCTCTGCTCGTC GTGGGGGACGTCGATGCAAAGGGCGCTATGCATGCTGCCATGGCCGACTTCGCCCCTAAACTGGGGCCTGGAGGT GCGACGCTGCGAGTCATCTCCGAGGCCGGACACGTTCCCATGTGTGAGGATCCCGAGGCTTTTTGGGATGCCATT GGCGATTTTTTGTGA
Gene	>Ophcf2\|03689 ATGCCCCGTCCAGGCCTCCTCCACGTAGCCACAACTCCCCCCCCCCTTCCCCCCTACACAGACTGGTACAACAAC GAACACGGCCCTGCCCGCCTCCGCCACCCCCTCATAACCACCGGCCACCGCTACATGGCAACAGACGACCAAACC CCTTCCTACCTCGCAATCTACACCGTTCCCGACCTCTCCGCCCTATCCACCTCTCAAAGCTACGCCCGCCTCCGA ACGCACCGCTCAGACAGAGAAGAAGCACTTATCAAGAGAGTCAACCCCCACCGCCAACTCCTTGACCTCATCTTC GAGAAGCAAACAGACATCCCATCGAAAGACCCCCCCTTCATCGTCTCCATCCCTTACAACCACCTCCCAGACCCC CAAACCTGGTTCGACGGCCCAACCCCCCAGCCAAAATCCTGGCTCCGAACACGACTCTTCCACGACCGCGAATCA AACACCGCCCTCGCCATCCATGACTTCTCAAGCCCGCCCCCGGCATCCGACTTCTCCGCGCCAGGCACGCGCATC TGGTCTCTCCTCTACATCTTTGGATCTGCGCCGCGGGATCTCGCGGTGCTGGCTGCTGAGCCCAGACCGCCTGCC TGGTCAGATGGAGAGATGACGACGACGACGCCAGGTGATGATGCCTCCATCGTCTCGTACGTCTCTGCTGCGGAC GGACTCGTCATCCCCTACAGACTTGAAGGCAATCCCTCTCCCAACGCACCCGTCATCGCCATGAGCAACTCCCTC CTCACCTCGCTCGAGATGTGGGATCCCCTCGTCAAGCTCATCCGCAAGCACCGTCCCGACCTCGCCATCCTCCGC TACGACTTTCGAGGCCGCCACTCCATCCCCTCTTCCTCCCCTCCCGTAACCGTCGGCCTCCTAGCCTCCGATCTG TGCTCCGTCCTTGACGCCCTGCGGATCCATCGTCTCCACGCCCTCATCGGCGTCTCCCTCGGCGGCGTAACCGCC CTTCGCTTCGCCCAACTTCACCCGAATCGCCTCGAGCGTCTCATAGGATGCGACTTCAACCCCGTCTCTACACCG TCCAACGCCCAAGCCTGGAGAGACCGCGCGGCCACGCCGCTTCCAACGCTGGCAGATCAAACCGTCGTCCGCTGG TTACACCCGCGCAACGCCTCCATCGCCCCCTGGCTCCTCTCCATAATCAAGGCAAACGACCCGGTCAGCTTCCGT GCCGCGTCCGAGGCCCTTCACGATTACGACCTCCGGCCCGCCGCTCCGGACTGCTCCGTTCCCGCTCTGCTCGTC GTGGGGGACGTCGATGCAAAGGGCGCTATGCATGCTGCCATGGCCGACTTCGCCCCTAAACTGGGGCCTGGAGGT GCGACGCTGCGAGTCATCTCCGAGGCCGGACACGTTCCCATGTGTGAGGATCCCGAGGCTTTTTGGGATGCCATT GGCGATTTTTTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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