Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03681
Gene name
Locationscaffold_03:3515252..3516365
Strand-
Gene length (bp)1113
Transcript length (bp)1011
Coding sequence length (bp)1011
Protein length (aa) 337

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09451 ATG27 Autophagy-related protein 27 3.1E-94 17 332

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 26 0.45

Transmembrane Domains

Domain # Start End Length
1 265 287 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03681
MHPPQLSTTTLALGLVLAPLRGVAMLRCENVRVDGHSFDLSQLGGPHSVVTSRYESIPDAHHNTTYTLDICKPLK
KSGTVKKTEECPNGTRVCAIQRFLQGDKNVVDNVVAIAGSLENVGGSQFEYEATRLKTSDSNSDSQKEGLRLVLK
GGKDPLVGPVGERREQKAIVEFLCDPNKKGDEGEWEAGDKYDRRSPDDNKGNDGKDQSAIEHQLKKEGAALVWEG
YGREKDADVLRLTWHTKFACEKRDGGDKDGGGSSSSHWGFFTWFVVLVFLGIAAYLIFGSWLNYNRYGARGWDLL
PHGDAIREIPYLMKDWTRRVLNTVQGTGSRGGYSAV*
Coding >Ophcf2|03681
ATGCATCCGCCGCAATTATCGACGACGACGCTGGCTCTCGGCTTGGTCTTGGCGCCTCTGCGGGGCGTCGCCATG
TTGAGATGTGAAAACGTCCGGGTTGATGGCCACAGCTTTGACCTTTCGCAATTGGGCGGGCCTCATTCCGTCGTC
ACGTCGCGATACGAGTCGATCCCGGATGCTCATCACAACACCACCTACACGCTGGATATCTGCAAACCGCTGAAG
AAGAGCGGAACGGTCAAGAAGACGGAGGAGTGTCCTAACGGAACGAGAGTCTGCGCCATCCAGCGCTTCCTGCAG
GGCGACAAGAACGTCGTCGACAATGTTGTGGCCATCGCCGGCTCGCTCGAGAACGTGGGCGGTTCGCAGTTCGAG
TACGAGGCCACGCGACTCAAGACGAGCGACTCCAACAGCGACTCACAGAAGGAAGGCCTTAGGCTCGTGCTCAAG
GGCGGCAAGGACCCCCTCGTCGGGCCCGTGGGGGAGCGCCGCGAACAGAAAGCCATCGTCGAGTTCCTCTGCGAC
CCCAATAAGAAGGGGGACGAAGGCGAGTGGGAGGCCGGCGACAAGTACGACAGGCGGTCCCCCGACGACAACAAG
GGCAACGACGGCAAAGACCAGTCTGCCATCGAACACCAGCTCAAGAAGGAGGGTGCTGCTCTCGTCTGGGAGGGC
TACGGCCGGGAAAAGGACGCTGACGTGCTGCGGCTAACGTGGCATACCAAGTTTGCTTGCGAGAAGCGAGACGGT
GGCGATAAGGACGGTGGCGGGAGCTCCAGTAGCCACTGGGGTTTCTTCACCTGGTTTGTCGTTCTCGTCTTCCTC
GGCATCGCCGCCTACCTCATCTTCGGATCGTGGCTCAACTACAACCGCTACGGCGCCAGGGGCTGGGATCTGCTT
CCCCACGGTGACGCCATCCGCGAGATACCATACTTGATGAAAGACTGGACGAGGCGGGTGCTAAATACGGTGCAG
GGTACTGGCAGTCGGGGAGGATACAGCGCAGTCTGA
Transcript >Ophcf2|03681
ATGCATCCGCCGCAATTATCGACGACGACGCTGGCTCTCGGCTTGGTCTTGGCGCCTCTGCGGGGCGTCGCCATG
TTGAGATGTGAAAACGTCCGGGTTGATGGCCACAGCTTTGACCTTTCGCAATTGGGCGGGCCTCATTCCGTCGTC
ACGTCGCGATACGAGTCGATCCCGGATGCTCATCACAACACCACCTACACGCTGGATATCTGCAAACCGCTGAAG
AAGAGCGGAACGGTCAAGAAGACGGAGGAGTGTCCTAACGGAACGAGAGTCTGCGCCATCCAGCGCTTCCTGCAG
GGCGACAAGAACGTCGTCGACAATGTTGTGGCCATCGCCGGCTCGCTCGAGAACGTGGGCGGTTCGCAGTTCGAG
TACGAGGCCACGCGACTCAAGACGAGCGACTCCAACAGCGACTCACAGAAGGAAGGCCTTAGGCTCGTGCTCAAG
GGCGGCAAGGACCCCCTCGTCGGGCCCGTGGGGGAGCGCCGCGAACAGAAAGCCATCGTCGAGTTCCTCTGCGAC
CCCAATAAGAAGGGGGACGAAGGCGAGTGGGAGGCCGGCGACAAGTACGACAGGCGGTCCCCCGACGACAACAAG
GGCAACGACGGCAAAGACCAGTCTGCCATCGAACACCAGCTCAAGAAGGAGGGTGCTGCTCTCGTCTGGGAGGGC
TACGGCCGGGAAAAGGACGCTGACGTGCTGCGGCTAACGTGGCATACCAAGTTTGCTTGCGAGAAGCGAGACGGT
GGCGATAAGGACGGTGGCGGGAGCTCCAGTAGCCACTGGGGTTTCTTCACCTGGTTTGTCGTTCTCGTCTTCCTC
GGCATCGCCGCCTACCTCATCTTCGGATCGTGGCTCAACTACAACCGCTACGGCGCCAGGGGCTGGGATCTGCTT
CCCCACGGTGACGCCATCCGCGAGATACCATACTTGATGAAAGACTGGACGAGGCGGGTGCTAAATACGGTGCAG
GGTACTGGCAGTCGGGGAGGATACAGCGCAGTCTGA
Gene >Ophcf2|03681
ATGCATCCGCCGCAATTATCGACGACGACGCTGGCTCTCGGCTTGGTCTTGGCGCCTCTGCGGGGCGTCGCCATG
TTGAGATGTGAAAACGTCCGGGTTGATGGCCACAGCTTTGACCTTTCGCAATTGGGCGGGCCTCATTCCGTCGTC
ACGTCGCGATACGAGTCGATCCCGGATGCTCATCACAACACCACCTACACGCTGGATATCTGCAAACCGCTGAAG
AAGAGCGGAACGGTCAAGAAGACGGAGGAGTGTCCTAACGGAACGAGAGGTGAGATCCGACCATCCTCCTGACCA
GCCACAGATGCTGACAGCCGCCCAGTCTGCGCCATCCAGCGCTTCCTGCAGGGCGACAAGAACGTCGTCGACAAT
GTTGTGGCCATCGCCGGCTCGCTCGAGAACGTGGGCGGTTCGCAGTTCGAGTACGAGGCCACGCGACTCAAGACG
AGCGACTCCAACAGCGACTCACAGAAGGAAGGCCTTAGGCTCGTGCTCAAGGGCGGCAAGGACCCCCTCGTCGGG
CCCGTGGGGGAGCGCCGCGAACAGAAAGCCATCGTCGAGTTCCTCTGCGACCCCAATAAGAAGGGGGACGAAGGC
GAGTGGGAGGCCGGCGACAAGTACGACAGGCGGTCCCCCGACGACAACAAGGGCAACGACGGCAAAGACCAGTCT
GCCATCGAACACCAGCTCAAGAAGGAGGGTGCTGCTCTCGTCTGGGAGGGCTACGGCCGGGAAAAGGACGCTGAC
GTGCTGCGGCTAACGTGGCATACCAAGTTTGCTTGCGAGAAGCGAGACGGTGGCGATAAGGACGGTGGCGGGAGC
TCCAGTAGCCACTGGGGTTTCTTCACCTGGTTTGTCGTTCTGTGAGTCTGTCCTCTGTTGAGCGCGTCCTGTTTT
GCTAACGGCCTGGTCAGCGTCTTCCTCGGCATCGCCGCCTACCTCATCTTCGGATCGTGGCTCAACTACAACCGC
TACGGCGCCAGGGGCTGGGATCTGCTTCCCCACGGTGACGCCATCCGCGAGATACCATACTTGATGAAAGACTGG
ACGAGGCGGGTGCTAAATACGGTGCAGGGTACTGGCAGTCGGGGAGGATACAGCGCAGTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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