© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03656 |
| Gene name | |
| Location | scaffold_03:3436930..3439891 |
| Strand | - |
| Gene length (bp) | 2961 |
| Transcript length (bp) | 2634 |
| Coding sequence length (bp) | 2634 |
| Protein length (aa) | 878 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00654 | Voltage_CLC | Voltage gated chloride channel | 5.7E-80 | 309 | 686 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005247 | voltage-gated chloride channel activity | Yes |
| GO:0006821 | chloride transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015267 | channel activity | No |
| GO:0003674 | molecular_function | No |
| GO:0015698 | inorganic anion transport | No |
| GO:0005215 | transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005244 | voltage-gated ion channel activity | No |
| GO:0006810 | transport | No |
| GO:0022836 | gated channel activity | No |
| GO:0009987 | cellular process | No |
| GO:0022832 | voltage-gated channel activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008308 | voltage-gated anion channel activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006820 | anion transport | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| GO:0005254 | chloride channel activity | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| GO:0005253 | anion channel activity | No |
| GO:0051179 | localization | No |
| GO:0005216 | ion channel activity | No |
| GO:0008509 | anion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 154 | 176 | 22 |
| 2 | 232 | 254 | 22 |
| 3 | 325 | 347 | 22 |
| 4 | 389 | 411 | 22 |
| 5 | 423 | 445 | 22 |
| 6 | 460 | 482 | 22 |
| 7 | 503 | 522 | 19 |
| 8 | 561 | 583 | 22 |
| 9 | 590 | 612 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03656 MAIGDPEPPDPSSQASSPLTMRRPSSLRRWHSSGEPDERSPLLVPPPRTTSRPRVRIRSGANSPRFPSLSRNQSN AGSVFGARHFSRHESLSQRLLSAFADGRGSIAGSKSSLFVDERVWYDQFTSTDWVHDAIADSHRVKALRNRRGFW GRAAILFDGVQGWILSALSGFVVALIAYAVDVSEATVFDYKDGYCARAWYLGEQKCCPRGPCEDWKNWSEVVSTS PLGPRWTEFTIYISCVIGFAVFSCWLALWTETVVPSAYRLTTLDENLAALSPPHLSDEGQTDDSASPRRRSDADG ANPPMVYYSAAGSGVAEVRVIISGFVLHGFLGFKTLVIKMVSLIFSVSSGLSLGKEGPFVHMATCVGNIACRLFP KYDQNDAKRREALSAAAAAGVAVAFGAPLGGVLFGLEEVAYFFPAKTLFRTFFCCIIAALSLKFLNPFGTHKIVM FEVRYLVDWDFFELLGFIFVGVLGGAIGALFIKAHKHWAHSFRRIRVIKAYPMFEVFLVAAITGLMSYWNVLTKL PVAKLLFNLASPCDHSSDGYEDELGLCVKSAEDIPGVIRNLLIAFVIKGFLTVITFGIKVPSGIYIPSMVVGGLL GRIVGHLMQWLVMSVPHWRIFGNCATATEGTCVQPGVYGLIAAGATMCGTTRLSVTLAVILFELTGSLDYVLPFS LSILVSKWTADAIEPHSIYDLLTSMNSYPFLDNKRKPVFTGDLEDIVPRLRRERVIDITDSPLVSAASLRAKLEV LHRSAELDGGLPIVRYGVLVGLIPAPDLEYALDQLEDEDSSMCLMDRVPSIDDDDVCEADPTDFARYIDPAPVAL DIRSPMDLVYECFVKLGLRYICVLKDGKYAGMTHKKTFVKYMRQLEEDGDWS* |
| Coding | >Ophcf2|03656 ATGGCCATTGGTGACCCTGAGCCGCCGGACCCTTCTTCTCAAGCGTCGTCCCCTCTGACGATGCGCCGGCCTTCT TCCTTACGCCGATGGCACTCGAGCGGAGAGCCTGACGAGCGGTCGCCGCTACTGGTGCCGCCTCCGAGGACGACG TCGAGGCCCCGAGTTCGAATCCGCAGCGGCGCCAACTCTCCCCGCTTTCCGTCTCTCTCTCGGAACCAGAGCAAC GCAGGAAGCGTCTTTGGCGCGCGACATTTCAGTCGACACGAGTCACTGAGTCAGAGACTGCTATCAGCCTTCGCC GACGGGCGTGGATCCATTGCGGGCTCCAAGAGCTCCCTGTTCGTCGACGAACGAGTTTGGTACGATCAGTTCACA AGCACCGACTGGGTGCATGATGCCATTGCCGATTCACACCGAGTCAAGGCCCTCCGCAACAGAAGGGGCTTCTGG GGCCGTGCCGCCATATTGTTTGACGGTGTTCAGGGCTGGATTCTCAGCGCGCTTTCGGGCTTCGTTGTGGCTCTC ATTGCCTACGCCGTCGACGTGAGTGAGGCTACCGTCTTCGATTACAAGGATGGCTACTGTGCCAGGGCGTGGTAT CTCGGGGAGCAGAAATGCTGCCCTCGTGGGCCTTGCGAGGACTGGAAGAACTGGTCCGAAGTCGTCAGCACCAGC CCTCTCGGTCCGAGGTGGACCGAATTCACCATATACATATCGTGCGTCATCGGCTTCGCCGTCTTTTCCTGCTGG CTAGCTCTGTGGACGGAGACGGTAGTTCCATCTGCATACCGCCTGACGACGCTCGACGAGAACTTGGCCGCGCTG AGCCCACCCCATCTTTCAGACGAGGGCCAGACGGACGATTCGGCGAGTCCCCGGCGCCGGAGCGACGCCGACGGC GCGAATCCGCCGATGGTTTATTACTCGGCAGCCGGCAGCGGTGTGGCCGAGGTGCGTGTCATCATCAGCGGTTTC GTTCTGCACGGCTTCCTCGGCTTCAAGACGCTGGTCATCAAGATGGTCTCGCTCATCTTCAGCGTCTCGTCCGGC CTCAGCCTGGGAAAGGAAGGGCCGTTTGTTCACATGGCGACGTGCGTCGGCAACATCGCCTGTCGACTGTTCCCC AAGTATGACCAGAACGATGCCAAGCGGCGAGAGGCCCTCTCTGCAGCGGCGGCGGCCGGCGTTGCTGTCGCCTTT GGAGCGCCGTTGGGAGGCGTCTTGTTCGGGCTCGAGGAGGTGGCCTACTTCTTCCCGGCCAAGACGCTGTTCCGG ACCTTTTTCTGCTGCATCATTGCCGCCCTGTCGCTCAAGTTCCTCAACCCTTTCGGCACCCACAAGATTGTCATG TTCGAGGTGCGCTACCTCGTCGACTGGGACTTTTTCGAGCTGCTGGGCTTCATCTTCGTCGGCGTCCTCGGCGGT GCCATTGGTGCGCTCTTCATCAAGGCTCACAAGCACTGGGCCCATAGCTTCCGCCGGATCCGCGTCATCAAGGCC TACCCCATGTTTGAAGTCTTTCTCGTTGCCGCCATCACCGGCCTCATGAGCTACTGGAACGTGCTGACGAAGCTG CCTGTGGCCAAGCTGCTCTTCAACCTGGCGTCCCCATGCGATCACTCATCTGACGGCTACGAGGATGAGCTCGGC CTGTGTGTGAAGTCTGCCGAGGACATTCCGGGCGTCATCCGGAACCTCTTGATTGCTTTCGTCATCAAGGGGTTT CTAACCGTCATCACCTTTGGCATTAAAGTTCCGTCCGGCATTTATATTCCATCCATGGTAGTGGGCGGTCTGCTG GGCCGCATCGTAGGCCACCTAATGCAATGGCTGGTGATGTCGGTACCGCACTGGCGCATCTTTGGCAACTGTGCC ACGGCCACGGAAGGGACCTGTGTCCAACCCGGCGTGTACGGCCTCATTGCAGCCGGGGCGACCATGTGCGGGACG ACGAGGCTGTCGGTGACGCTGGCTGTCATTCTCTTTGAGCTGACAGGCAGTCTGGACTACGTCCTCCCGTTTTCT CTGTCCATTTTGGTTTCCAAGTGGACGGCGGATGCCATTGAGCCGCACAGCATCTACGACCTTCTCACGAGCATG AACTCGTACCCGTTCCTGGACAACAAACGCAAGCCTGTCTTCACCGGCGACTTGGAAGACATCGTGCCGCGGCTG CGACGAGAGCGGGTGATTGACATAACCGACTCGCCTCTGGTGTCAGCAGCGAGTCTCCGGGCCAAGCTCGAGGTG CTGCACCGTTCAGCCGAGCTGGACGGCGGGCTGCCGATTGTGCGGTACGGGGTGCTGGTCGGGCTGATCCCGGCG CCGGACCTCGAGTACGCGCTCGATCAGCTGGAGGACGAGGACTCGAGCATGTGTCTCATGGACAGGGTACCGAGT ATCGACGACGACGACGTATGCGAGGCGGACCCGACGGACTTCGCGCGCTACATCGATCCGGCTCCCGTTGCGCTA GACATACGGTCGCCGATGGACCTCGTGTACGAGTGCTTCGTCAAGCTGGGTCTCCGGTACATTTGCGTGCTCAAA GATGGCAAATACGCGGGCATGACACACAAGAAGACGTTTGTCAAGTACATGAGGCAGCTCGAAGAGGACGGAGAT TGGAGTTGA |
| Transcript | >Ophcf2|03656 ATGGCCATTGGTGACCCTGAGCCGCCGGACCCTTCTTCTCAAGCGTCGTCCCCTCTGACGATGCGCCGGCCTTCT TCCTTACGCCGATGGCACTCGAGCGGAGAGCCTGACGAGCGGTCGCCGCTACTGGTGCCGCCTCCGAGGACGACG TCGAGGCCCCGAGTTCGAATCCGCAGCGGCGCCAACTCTCCCCGCTTTCCGTCTCTCTCTCGGAACCAGAGCAAC GCAGGAAGCGTCTTTGGCGCGCGACATTTCAGTCGACACGAGTCACTGAGTCAGAGACTGCTATCAGCCTTCGCC GACGGGCGTGGATCCATTGCGGGCTCCAAGAGCTCCCTGTTCGTCGACGAACGAGTTTGGTACGATCAGTTCACA AGCACCGACTGGGTGCATGATGCCATTGCCGATTCACACCGAGTCAAGGCCCTCCGCAACAGAAGGGGCTTCTGG GGCCGTGCCGCCATATTGTTTGACGGTGTTCAGGGCTGGATTCTCAGCGCGCTTTCGGGCTTCGTTGTGGCTCTC ATTGCCTACGCCGTCGACGTGAGTGAGGCTACCGTCTTCGATTACAAGGATGGCTACTGTGCCAGGGCGTGGTAT CTCGGGGAGCAGAAATGCTGCCCTCGTGGGCCTTGCGAGGACTGGAAGAACTGGTCCGAAGTCGTCAGCACCAGC CCTCTCGGTCCGAGGTGGACCGAATTCACCATATACATATCGTGCGTCATCGGCTTCGCCGTCTTTTCCTGCTGG CTAGCTCTGTGGACGGAGACGGTAGTTCCATCTGCATACCGCCTGACGACGCTCGACGAGAACTTGGCCGCGCTG AGCCCACCCCATCTTTCAGACGAGGGCCAGACGGACGATTCGGCGAGTCCCCGGCGCCGGAGCGACGCCGACGGC GCGAATCCGCCGATGGTTTATTACTCGGCAGCCGGCAGCGGTGTGGCCGAGGTGCGTGTCATCATCAGCGGTTTC GTTCTGCACGGCTTCCTCGGCTTCAAGACGCTGGTCATCAAGATGGTCTCGCTCATCTTCAGCGTCTCGTCCGGC CTCAGCCTGGGAAAGGAAGGGCCGTTTGTTCACATGGCGACGTGCGTCGGCAACATCGCCTGTCGACTGTTCCCC AAGTATGACCAGAACGATGCCAAGCGGCGAGAGGCCCTCTCTGCAGCGGCGGCGGCCGGCGTTGCTGTCGCCTTT GGAGCGCCGTTGGGAGGCGTCTTGTTCGGGCTCGAGGAGGTGGCCTACTTCTTCCCGGCCAAGACGCTGTTCCGG ACCTTTTTCTGCTGCATCATTGCCGCCCTGTCGCTCAAGTTCCTCAACCCTTTCGGCACCCACAAGATTGTCATG TTCGAGGTGCGCTACCTCGTCGACTGGGACTTTTTCGAGCTGCTGGGCTTCATCTTCGTCGGCGTCCTCGGCGGT GCCATTGGTGCGCTCTTCATCAAGGCTCACAAGCACTGGGCCCATAGCTTCCGCCGGATCCGCGTCATCAAGGCC TACCCCATGTTTGAAGTCTTTCTCGTTGCCGCCATCACCGGCCTCATGAGCTACTGGAACGTGCTGACGAAGCTG CCTGTGGCCAAGCTGCTCTTCAACCTGGCGTCCCCATGCGATCACTCATCTGACGGCTACGAGGATGAGCTCGGC CTGTGTGTGAAGTCTGCCGAGGACATTCCGGGCGTCATCCGGAACCTCTTGATTGCTTTCGTCATCAAGGGGTTT CTAACCGTCATCACCTTTGGCATTAAAGTTCCGTCCGGCATTTATATTCCATCCATGGTAGTGGGCGGTCTGCTG GGCCGCATCGTAGGCCACCTAATGCAATGGCTGGTGATGTCGGTACCGCACTGGCGCATCTTTGGCAACTGTGCC ACGGCCACGGAAGGGACCTGTGTCCAACCCGGCGTGTACGGCCTCATTGCAGCCGGGGCGACCATGTGCGGGACG ACGAGGCTGTCGGTGACGCTGGCTGTCATTCTCTTTGAGCTGACAGGCAGTCTGGACTACGTCCTCCCGTTTTCT CTGTCCATTTTGGTTTCCAAGTGGACGGCGGATGCCATTGAGCCGCACAGCATCTACGACCTTCTCACGAGCATG AACTCGTACCCGTTCCTGGACAACAAACGCAAGCCTGTCTTCACCGGCGACTTGGAAGACATCGTGCCGCGGCTG CGACGAGAGCGGGTGATTGACATAACCGACTCGCCTCTGGTGTCAGCAGCGAGTCTCCGGGCCAAGCTCGAGGTG CTGCACCGTTCAGCCGAGCTGGACGGCGGGCTGCCGATTGTGCGGTACGGGGTGCTGGTCGGGCTGATCCCGGCG CCGGACCTCGAGTACGCGCTCGATCAGCTGGAGGACGAGGACTCGAGCATGTGTCTCATGGACAGGGTACCGAGT ATCGACGACGACGACGTATGCGAGGCGGACCCGACGGACTTCGCGCGCTACATCGATCCGGCTCCCGTTGCGCTA GACATACGGTCGCCGATGGACCTCGTGTACGAGTGCTTCGTCAAGCTGGGTCTCCGGTACATTTGCGTGCTCAAA GATGGCAAATACGCGGGCATGACACACAAGAAGACGTTTGTCAAGTACATGAGGCAGCTCGAAGAGGACGGAGAT TGGAGTTGA |
| Gene | >Ophcf2|03656 ATGGCCATTGGTGACCCTGAGCCGCCGGACCCTTCTTCTCAAGCGTCGTCCCCTCTGACGATGCGCCGGCCTTCT TCCTTACGCCGATGGCACTCGAGCGGAGAGCCTGACGAGCGGTCGCCGCTACTGGTGCCGCCTCCGAGGACGACG TCGAGGCCCCGAGTTCGAATCCGCAGCGGCGCCAACTCTCCCCGCTTTCCGTCTCTCTCTCGGAACCAGAGCAAC GCAGGTGAGGAGGCTTCCCGTTCGAAGTTGGCTTACACTTCACCATCTGCTGACGTCCGTCCACCTGGCTTATAG GAAGCGTCTTTGGCGCGCGACATTTCAGTCGACACGAGTCACTGAGTCAGAGACTGCTATCAGCCTTCGCCGACG GGCGTGGATCCATTGCGGGCTCCAAGAGCTCCCTGTTCGTCGACGAACGAGTTTGGTACGATCAGTTCACAAGCA CCGACTGGGTGCATGATGCCATTGCCGATTCACACCGAGTCAAGGCCCTCCGCAACAGAAGGGGCTTCTGGGGCC GTGCCGCCATATTGTTTGACGGTGTTCAGGGCTGGATTCTCAGCGCGCTTTCGGGCTTCGTTGTGGCTCTCATTG CCTACGCCGTCGACGTGAGTGAGGCTACCGTCTTCGATTACAAGGATGGCTACTGTGCCAGGGCGTGGTATCTCG GGGAGCAGGTGAGGCCTTGGTCTGCGAGCCGCTGGCTTGCGTGTGCTTACGCGCTTGACAGAAATGCTGCCCTCG TGGGCCTTGCGAGGACTGGAAGAACTGGTCCGAAGTCGTCAGCACCAGCCCTCTCGGTCCGAGGTGGACCGAATT CACCATATACATATCGTGCGTCATCGGCTTCGCCGTCTTTTCCTGCTGGCTAGCTCTGTGGACGGAGACGGTAGT TCCATCTGCATACCGCCTGACGACGCTCGACGAGAACTTGGCCGCGCTGAGCCCACCCCATCTTTCAGACGAGGG CCAGACGGACGATTCGGCGAGTCCCCGGCGCCGGAGCGACGCCGACGGCGCGAATCCGCCGATGGTTTATTACTC GGCAGCCGGCAGCGGTGTGGCCGAGGTGCGTGTCATCATCAGCGGTTTCGTTCTGCACGGCTTCCTCGGCTTCAA GACGCTGGTCATCAAGATGGTCTCGCTCATCTTCAGCGTCTCGTCCGGCCTCAGCCTGGGAAAGGAAGGGCCGTT TGTTCACATGGCGACGTGCGTCGGCAACATCGCCTGTCGACTGTTCCCCAAGTATGACCAGAACGATGCCAAGCG GCGAGAGGCCCTCTCTGCAGCGGCGGCGGCCGGCGTTGCTGTCGCCTTTGGAGCGCCGTTGGGAGGCGTCTTGTT CGGGCTCGAGGAGGTGGCCTACTTCTTCCCGGCCAAGACGCTGTTCCGGACCTTTTTCTGCTGCATCATTGCCGC CCTGTCGCTCAAGTTCCTCAACCCTTTCGGCACCCACAAGATTGTCATGTTCGAGGTGCGCTACCTCGTCGACTG GGACTTTTTCGAGCTGCTGGGCTTCATCTTCGTCGGCGTCCTCGGCGGTGCCATTGGTGCGCTCTTCATCAAGGC TCACAAGCACTGGGCCCATAGCTTCCGCCGGATCCGCGTCATCAAGGCCTACCCCATGTTTGAAGTCTTTCTCGT TGCCGCCATCACCGGCCTCATGAGCTACTGGAACGTGCTGACGAAGCTGCCTGTGGCCAAGCTGCTCTTCAACCT GGCGTCCCCATGCGATCACTCATCTGACGGCTACGAGGATGAGCTCGGCCTGTGTGTGAAGTCTGCCGAGGACAT TCCGGGCGTCATCCGGAACCTCTTGATTGCTTTCGTCATCAAGGGGTTTCTAACCGTCATCACCTTTGGCATTGT GAGTGGCCGGCGGGACGGTACGATGGTAGTTGAGCTAATGGAATGGATAGAAAGTTCCGTCCGGCATTTATATTC CATCCATGGTAGTGGGCGGTCTGCTGGGCCGCATCGTAGGCCACCTAATGCAATGGCTGGTGATGTCGGTACCGC ACTGGCGCATCTTTGGCAACTGTGCCACGGCCACGGAAGGGACCTGTGTCCAACCCGGCGTGTACGGCCTCATTG CAGCCGGGGCGACCATGTGCGGGACGACGAGGCTGTCGGTGACGCTGGCTGTCATTCTCTTTGAGCTGACAGGCA GTCTGGACTACGTCCTCCCGTTTTCTCTGTCCATTTTGGTTTCCAAGTGGACGGCGGATGCCATTGAGCCGCACA GCATCTACGTGAGCGTGAAATTCCTGGGCGGAGGTTAGCGACTGACTGCTACGGACAGGACCTTCTCACGAGCAT GAACTCGTACCCGTTCCTGGACAACAAACGCAAGCCTGTCTTCACCGGCGACTTGGAAGACATCGTGCCGCGGCT GCGACGAGAGCGGGTGATTGACATAACCGACTCGCCTCTGGTGTCAGCAGCGAGTCTCCGGGCCAAGCTCGAGGT GCTGCACCGTTCAGCCGAGCTGGACGGCGGGCTGCCGATTGTGCGGTACGGGGTGCTGGTCGGGCTGATCCCGGC GCCGGACCTCGAGTACGCGCTCGATCAGCTGGAGGACGAGGACTCGAGCATGTGTCTCATGGACAGGGTACCGAG TATCGACGACGACGACGTATGCGAGGCGGACCCGACGGACTTCGCGCGCTACATCGATCCGGTGAGTCGGCCCGG GCATGGTGGCGGAACACGGCTGACGGGGTTGTGGCAGGCTCCCGTTGCGCTAGACATACGGTCGCCGATGGACCT CGTGTACGAGTGCTTCGTCAAGCTGGGTCTCCGGTACATTTGCGTGCTCAAAGATGGCAAATACGCGGGCATGGT AAGCGGTACAGAGTCGACCAGTCGGGACGATGGGCTAAGACGACGCAGACACACAAGAAGACGTTTGTCAAGTAC ATGAGGCAGCTCGAAGAGGACGGAGATTGGAGTTGA |