Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03637
Gene name
Locationscaffold_03:3378896..3380118
Strand-
Gene length (bp)1222
Transcript length (bp)1035
Coding sequence length (bp)1035
Protein length (aa) 345

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04193 PQ-loop PQ loop repeat 6.8E-16 16 71
PF04193 PQ-loop PQ loop repeat 2.0E-17 194 245

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 12 31 19
2 46 68 22
3 156 178 22
4 193 215 22
5 228 247 19
6 267 289 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03637
MAPLKPLFPVDAVAVSGICGAISIACWVVVFSPQIIQQFRQGNADGLSVQFIAIWLLGDVFNIVGAVLQGTMLAI
YYTLTDLVLLGQCFYYRGPRWRDDASPASDVDDERTPLTSRAAAGETRPSDWTGLSPAVGHPAAEAAPEERRARS
GLLRTAAWKAIVIAMVLCAGATGWLLNGRRNHGSRIGLEFDAAGQVFGYLSAVAYIASRVPQLLLNWRRKTTDGL
SMLFFLFACLGNATYVLSILSYEPRGCVDDMCSPGAVYGRHVLVNLSWLMGSAVTLLMDLVVLAQHLIYRTAEEE
EEEDDDDDEEDEEDNDNEQGGGRRSVENDWAGRPILRRGETDNR*
Coding >Ophcf2|03637
ATGGCGCCTCTGAAGCCGCTGTTTCCCGTTGACGCCGTGGCCGTTTCCGGAATTTGCGGGGCTATATCCATTGCG
TGTTGGGTCGTCGTCTTCTCGCCGCAAATCATCCAACAGTTCCGGCAGGGAAACGCCGACGGCTTGTCGGTCCAG
TTCATCGCCATATGGCTGCTGGGAGACGTCTTCAACATCGTGGGGGCCGTCCTTCAGGGGACGATGCTGGCGATA
TATTACACCTTGACGGACCTGGTGCTGTTGGGCCAGTGCTTCTACTATCGCGGACCGCGATGGCGAGACGACGCG
TCCCCGGCGTCGGATGTCGATGACGAGCGGACACCATTGACTAGTCGAGCTGCGGCGGGCGAGACGCGGCCATCG
GACTGGACAGGCCTGTCGCCGGCCGTCGGTCATCCAGCGGCCGAAGCAGCCCCGGAAGAGCGGCGGGCGCGCTCG
GGCCTGCTACGGACAGCCGCATGGAAGGCAATCGTCATCGCCATGGTATTGTGCGCGGGGGCCACCGGCTGGCTC
CTCAACGGGAGGCGCAATCACGGGTCGCGTATCGGACTCGAGTTCGACGCGGCGGGCCAGGTCTTCGGCTACCTG
AGCGCGGTGGCATACATTGCGTCGCGCGTGCCGCAGCTGCTGCTTAACTGGCGGCGCAAGACGACCGATGGATTG
AGCATGCTGTTCTTTCTCTTTGCTTGCTTGGGGAACGCCACGTATGTGCTGTCCATTTTGTCGTATGAGCCGAGG
GGTTGTGTCGATGATATGTGCAGTCCGGGGGCTGTGTATGGTCGACACGTGCTCGTGAACTTGAGCTGGTTGATG
GGGAGTGCCGTGACGCTGTTGATGGACTTGGTTGTCTTGGCGCAGCACTTGATATATAGGACGGCGGAGGAGGAG
GAGGAGGAAGACGACGACGACGACGAGGAAGACGAGGAAGACAATGACAACGAGCAAGGTGGCGGGAGGCGTTCG
GTTGAAAACGACTGGGCTGGTAGACCTATACTGCGGCGAGGAGAAACGGACAATCGGTGA
Transcript >Ophcf2|03637
ATGGCGCCTCTGAAGCCGCTGTTTCCCGTTGACGCCGTGGCCGTTTCCGGAATTTGCGGGGCTATATCCATTGCG
TGTTGGGTCGTCGTCTTCTCGCCGCAAATCATCCAACAGTTCCGGCAGGGAAACGCCGACGGCTTGTCGGTCCAG
TTCATCGCCATATGGCTGCTGGGAGACGTCTTCAACATCGTGGGGGCCGTCCTTCAGGGGACGATGCTGGCGATA
TATTACACCTTGACGGACCTGGTGCTGTTGGGCCAGTGCTTCTACTATCGCGGACCGCGATGGCGAGACGACGCG
TCCCCGGCGTCGGATGTCGATGACGAGCGGACACCATTGACTAGTCGAGCTGCGGCGGGCGAGACGCGGCCATCG
GACTGGACAGGCCTGTCGCCGGCCGTCGGTCATCCAGCGGCCGAAGCAGCCCCGGAAGAGCGGCGGGCGCGCTCG
GGCCTGCTACGGACAGCCGCATGGAAGGCAATCGTCATCGCCATGGTATTGTGCGCGGGGGCCACCGGCTGGCTC
CTCAACGGGAGGCGCAATCACGGGTCGCGTATCGGACTCGAGTTCGACGCGGCGGGCCAGGTCTTCGGCTACCTG
AGCGCGGTGGCATACATTGCGTCGCGCGTGCCGCAGCTGCTGCTTAACTGGCGGCGCAAGACGACCGATGGATTG
AGCATGCTGTTCTTTCTCTTTGCTTGCTTGGGGAACGCCACGTATGTGCTGTCCATTTTGTCGTATGAGCCGAGG
GGTTGTGTCGATGATATGTGCAGTCCGGGGGCTGTGTATGGTCGACACGTGCTCGTGAACTTGAGCTGGTTGATG
GGGAGTGCCGTGACGCTGTTGATGGACTTGGTTGTCTTGGCGCAGCACTTGATATATAGGACGGCGGAGGAGGAG
GAGGAGGAAGACGACGACGACGACGAGGAAGACGAGGAAGACAATGACAACGAGCAAGGTGGCGGGAGGCGTTCG
GTTGAAAACGACTGGGCTGGTAGACCTATACTGCGGCGAGGAGAAACGGACAATCGGTGA
Gene >Ophcf2|03637
ATGGCGCCTCTGAAGCCGCTGTTTCCCGTTGACGCCGTGGCCGTTTCCGGAATTTGCGGGTATGGATGAGTCTTC
GCTTTGGCTGGCGGATGCGGACTGACGCGTTATGGTTCTAGGGCTATATCCATTGCGTGTTGGGGTCAGTGACGC
GTCCGTGATCGAGTTCGTCTTCGGGACGGCGACTGACTATCATCGAGCAGTCGTCGTCTTCTCGCCGCAAATCAT
CCAACAGTTCCGGCAGGGAAACGCCGACGGCTTGTCGGTCCAGTTCATCGCCATATGGCTGCTGGGAGACGTCTT
CAACATCGTGGGGGCCGTCCTTCAGGGGGTTCTCCCGACCATGGCACGAAACCTAGGACTTGAAAAGAGGCGATT
TGGGCGCTGACGCGAGGGACAGACGATGCTGGCGATATATTACACCTTGACGGACCTGGTGCTGTTGGGCCAGTG
CTTCTACTATCGCGGACCGCGATGGCGAGACGACGCGTCCCCGGCGTCGGATGTCGATGACGAGCGGACACCATT
GACTAGTCGAGCTGCGGCGGGCGAGACGCGGCCATCGGACTGGACAGGCCTGTCGCCGGCCGTCGGTCATCCAGC
GGCCGAAGCAGCCCCGGAAGAGCGGCGGGCGCGCTCGGGCCTGCTACGGACAGCCGCATGGAAGGCAATCGTCAT
CGCCATGGTATTGTGCGCGGGGGCCACCGGCTGGCTCCTCAACGGGAGGCGCAATCACGGGTCGCGTATCGGACT
CGAGTTCGACGCGGCGGGCCAGGTCTTCGGCTACCTGAGCGCGGTGGCATACATTGCGTCGCGCGTGCCGCAGCT
GCTGCTTAACTGGCGGCGCAAGACGACCGATGGATTGAGCATGCTGTTCTTTCTCTTTGCTTGCTTGGGGAACGC
CACGTATGTGCTGTCCATTTTGTCGTATGAGCCGAGGGGTTGTGTCGATGATATGTGCAGTCCGGGGGCTGTGTA
TGGTCGACACGTGCTCGTGAACTTGAGCTGGTTGATGGGGAGTGCCGTGACGCTGTTGATGGACTTGGTTGTCTT
GGCGCAGCACTTGATATATAGGACGGCGGAGGAGGAGGAGGAGGAAGACGACGACGACGACGAGGAAGACGAGGA
AGACAATGACAACGAGCAAGGTGGCGGGAGGCGTTCGGTTGAAAACGACTGGGCTGGTAGACCTATACTGCGGCG
AGGAGAAACGGACAATCGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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