© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophcf2|03636 |
| Gene name | |
| Location | scaffold_03:3377314..3378105 |
| Strand | - |
| Gene length (bp) | 791 |
| Transcript length (bp) | 735 |
| Coding sequence length (bp) | 735 |
| Protein length (aa) | 245 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02466 | Tim17 | Tim17/Tim22/Tim23/Pmp24 family | 5.6E-24 | 111 | 218 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 210 | 227 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 153.49 | 88.29 | 218.69 |
| Alive | In ants, during behavior modification | 282.01 | 156.30 | 407.72 |
| Dead | In ants, recently dead | 218.02 | 123.53 | 312.51 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000657 | yes |
| Alive | Dead | 0.118192 | no |
| Dead | Fungus | 0.057682 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03636 MSSLWNSLTGGSKQSQAQAHTAVQTRAVGQTSPGLAETDEPEPVNMPLSLTPGTDAYIIQRSAFSDPSLLHPLAG LDKPSLEYLTLDESALSDLPGGQSVLPSRGFTDDLCYGTGITYLTALSIGGAWGLQEGLRRSDGQPPKLRLNSVL NAVTRRGPFLGNSAGAVAITYNCINSLIGHLRGKHAASNSVLAGALSGMVFKSTRGLRPMMISGGIVGSIAAVWA VFRRSVFPVPDRSAPITTM* |
| Coding | >Ophcf2|03636 ATGTCGTCACTCTGGAACTCCCTCACGGGGGGCAGCAAGCAGTCACAGGCCCAGGCCCACACGGCAGTTCAGACC CGGGCCGTGGGCCAGACATCGCCGGGCCTGGCCGAGACGGACGAGCCGGAGCCGGTCAATATGCCGCTGTCGCTG ACGCCGGGGACGGACGCCTACATCATCCAGAGATCGGCTTTTTCCGATCCGTCGCTGCTGCATCCCCTCGCCGGC CTCGACAAGCCGTCGCTCGAATACCTTACGCTCGACGAGTCGGCCCTGTCCGACCTACCGGGCGGTCAGTCGGTT CTGCCGTCGCGGGGCTTCACCGATGATCTCTGCTACGGCACCGGCATCACATATCTGACGGCGCTTTCGATTGGT GGTGCTTGGGGTCTGCAGGAGGGGTTACGCAGGTCTGACGGACAGCCGCCCAAGTTGCGGCTCAACTCTGTCCTC AACGCCGTTACCAGGCGAGGGCCTTTTCTCGGGAATTCGGCTGGTGCGGTGGCCATTACCTATAACTGCATCAAC TCGCTCATAGGTCACCTGCGCGGCAAGCACGCTGCTTCGAATAGCGTCTTGGCCGGCGCGTTGAGCGGCATGGTC TTTAAAAGTACGCGGGGGTTGCGTCCCATGATGATCTCTGGTGGCATTGTGGGGTCTATCGCCGCTGTCTGGGCT GTCTTTCGGCGAAGCGTGTTTCCCGTGCCGGATCGCAGTGCTCCGATCACGACGATGTGA |
| Transcript | >Ophcf2|03636 ATGTCGTCACTCTGGAACTCCCTCACGGGGGGCAGCAAGCAGTCACAGGCCCAGGCCCACACGGCAGTTCAGACC CGGGCCGTGGGCCAGACATCGCCGGGCCTGGCCGAGACGGACGAGCCGGAGCCGGTCAATATGCCGCTGTCGCTG ACGCCGGGGACGGACGCCTACATCATCCAGAGATCGGCTTTTTCCGATCCGTCGCTGCTGCATCCCCTCGCCGGC CTCGACAAGCCGTCGCTCGAATACCTTACGCTCGACGAGTCGGCCCTGTCCGACCTACCGGGCGGTCAGTCGGTT CTGCCGTCGCGGGGCTTCACCGATGATCTCTGCTACGGCACCGGCATCACATATCTGACGGCGCTTTCGATTGGT GGTGCTTGGGGTCTGCAGGAGGGGTTACGCAGGTCTGACGGACAGCCGCCCAAGTTGCGGCTCAACTCTGTCCTC AACGCCGTTACCAGGCGAGGGCCTTTTCTCGGGAATTCGGCTGGTGCGGTGGCCATTACCTATAACTGCATCAAC TCGCTCATAGGTCACCTGCGCGGCAAGCACGCTGCTTCGAATAGCGTCTTGGCCGGCGCGTTGAGCGGCATGGTC TTTAAAAGTACGCGGGGGTTGCGTCCCATGATGATCTCTGGTGGCATTGTGGGGTCTATCGCCGCTGTCTGGGCT GTCTTTCGGCGAAGCGTGTTTCCCGTGCCGGATCGCAGTGCTCCGATCACGACGATGTGA |
| Gene | >Ophcf2|03636 ATGTCGTCACTCTGGAACTCCCTCACGGGGGGCAGCAAGCAGTCACAGGCCCAGGCCCACACGGCAGTTCAGACC CGGGCCGTGGGCCAGACATCGCCGGGCCTGGCCGAGACGGACGAGCCGGAGCCGGTCAATATGCCGCTGTCGCTG ACGCCGGGGACGGACGCCTACATCATCCAGAGATCGGCTTTTTCCGATCCGTCGCTGCTGCATCCCCTCGCCGGC CTCGACAAGCCGTCGCTCGAATACCTTACGCTCGACGAGTCGGCCCTGTCCGACCTACCGGGCGGTCAGTCGGTT CTGCCGTCGCGGGGCTTCACCGATGATCTCTGCTACGGCACCGGCATCACATATCTGACGGCGCTTTCGATTGGT GGTGCTTGGGGTCTGCAGGAGGGGTTACGCAGGTCTGACGGACAGCCGCCCAAGTTGCGGCTCAACTCTGTCCTC AACGCCGTTACCAGGCGAGGGCCTTTTCTCGGGAATTCGGCTGGTGCGGTGGCCATTACCTATAACTGCATCAAC TCGCTCATAGGTCACCTGCGCGGCAAGCACGCTGCTTCGAATAGCGTCTTGGCCGGCGCGTTGAGCGGCATGGTC TTTAAAAGTACGCGGGGGTTGCGTCCCATGATGATCTCTGGTGGCATTGTGGGGTCTATCGCCGCTGTCTGGGCT GTAAGTCTTGGTGTGTTCGTGATCCGTCTTTGACGGGAACTGATGAAAGGGTCAAGGTCTTTCGGCGAAGCGTGT TTCCCGTGCCGGATCGCAGTGCTCCGATCACGACGATGTGA |