© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03620 |
| Gene name | |
| Location | scaffold_03:3342574..3343944 |
| Strand | + |
| Gene length (bp) | 1370 |
| Transcript length (bp) | 1257 |
| Coding sequence length (bp) | 1257 |
| Protein length (aa) | 419 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00002 | 7tm_2 | 7 transmembrane receptor (Secretin family) | 1.5E-14 | 17 | 216 |
| PF05462 | Dicty_CAR | Slime mold cyclic AMP receptor | 4.2E-06 | 29 | 191 |
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 1.5E-05 | 29 | 203 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0004930 | G protein-coupled receptor activity | Yes |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0038023 | signaling receptor activity | No |
| GO:0007165 | signal transduction | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0050789 | regulation of biological process | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0065007 | biological regulation | No |
| GO:0004888 | transmembrane signaling receptor activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 43 | 17 |
| 2 | 50 | 72 | 22 |
| 3 | 99 | 116 | 17 |
| 4 | 125 | 147 | 22 |
| 5 | 178 | 200 | 22 |
| 6 | 357 | 376 | 19 |
| 7 | 391 | 413 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 1.65 | 0.20 | 3.10 |
| Alive | In ants, during behavior modification | 1.19 | 0.02 | 2.36 |
| Dead | In ants, recently dead | 1.89 | 0.23 | 3.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.474224 | no |
| Alive | Dead | 0.205420 | no |
| Dead | Fungus | 0.773483 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03620 MLRHPSDPGLTTAEIEKLITIERTGAGLSMVAIGLTVLSFLVFKKLRTTPNMFLVFASLANAGASVASMIGYDGL HKGEESSLCQAQAFIFEWFMQSDPWWSFAMAVNVFLVFFNNADPASFRRYIWAYCLVCFGGPLIPAVVLISITGD PRGPVYGDAALWCWISDSWGLVRLYAYYIPIWLCIMMSFVIYFAVGYQVFHRRNQLMSMSMHEKAQQKPVRFGRS GFDSAEEARSSSVPSLMAIMRSNTIWQSLTRRQDVYGTVVTEVHVTSTLPPLDFDSPRAPPRSHARGGLPCTSSW ASGLHGESLIIRNNHHHFETICSSDSPRPKKRTCFEFIKAVFAEASLRLKRLDPVKMAYLRTSFIFGFSVLITWI PSSVNRLYTLANGGRISFTLSVASGCVLPLQGVWNAIIYLTTS* |
| Coding | >Ophcf2|03620 ATGCTGCGCCATCCAAGCGATCCGGGCCTCACCACGGCCGAGATCGAGAAGCTCATCACCATCGAGCGAACCGGT GCTGGCCTCTCTATGGTAGCCATAGGCCTTACTGTTCTTTCGTTCCTGGTTTTCAAGAAACTTCGTACCACTCCG AATATGTTTCTGGTCTTTGCCTCCCTCGCCAATGCTGGAGCCAGTGTCGCCTCCATGATCGGTTACGACGGCCTT CACAAGGGAGAAGAATCTTCTCTCTGCCAAGCCCAGGCCTTCATCTTCGAGTGGTTCATGCAGTCGGATCCTTGG TGGTCGTTTGCTATGGCGGTCAACGTCTTCCTCGTCTTCTTCAACAACGCGGATCCCGCTTCTTTCCGACGATAC ATCTGGGCTTACTGCCTTGTTTGCTTTGGTGGTCCTCTGATACCTGCTGTCGTCCTCATCTCCATCACAGGTGAC CCACGGGGTCCCGTCTACGGTGATGCTGCGCTCTGGTGTTGGATCAGTGACAGTTGGGGTCTTGTTCGGCTTTAT GCCTATTACATCCCTATCTGGCTGTGCATCATGATGTCCTTTGTCATCTACTTCGCCGTGGGATACCAAGTCTTT CACCGTCGAAACCAGTTGATGAGCATGTCGATGCACGAAAAGGCCCAGCAGAAGCCGGTCAGGTTCGGCAGAAGT GGCTTCGACTCTGCCGAGGAGGCACGCAGTTCCTCCGTCCCGTCCTTGATGGCCATTATGCGTTCTAACACCATC TGGCAGAGCCTCACACGACGACAAGACGTCTACGGAACCGTCGTCACCGAGGTTCATGTCACATCTACTCTGCCG CCCCTCGACTTTGACTCACCCCGGGCCCCGCCTCGCTCGCACGCCCGAGGCGGCCTCCCTTGCACTTCGTCTTGG GCTTCGGGTCTTCATGGTGAGAGCTTAATCATTCGCAACAATCATCATCATTTTGAGACCATCTGCTCGTCCGAT AGTCCCAGACCCAAGAAACGCACCTGCTTTGAATTCATCAAGGCCGTCTTTGCCGAAGCGTCTCTACGACTGAAG CGCCTTGACCCAGTCAAGATGGCCTACCTGCGCACCAGTTTCATATTTGGCTTTTCGGTTCTCATCACCTGGATT CCGAGCTCAGTCAACAGGCTGTACACGCTGGCCAACGGGGGACGCATCAGCTTCACCCTCAGTGTCGCCAGCGGC TGCGTGCTTCCGCTGCAGGGGGTCTGGAACGCCATCATCTACCTCACGACAAGCTAG |
| Transcript | >Ophcf2|03620 ATGCTGCGCCATCCAAGCGATCCGGGCCTCACCACGGCCGAGATCGAGAAGCTCATCACCATCGAGCGAACCGGT GCTGGCCTCTCTATGGTAGCCATAGGCCTTACTGTTCTTTCGTTCCTGGTTTTCAAGAAACTTCGTACCACTCCG AATATGTTTCTGGTCTTTGCCTCCCTCGCCAATGCTGGAGCCAGTGTCGCCTCCATGATCGGTTACGACGGCCTT CACAAGGGAGAAGAATCTTCTCTCTGCCAAGCCCAGGCCTTCATCTTCGAGTGGTTCATGCAGTCGGATCCTTGG TGGTCGTTTGCTATGGCGGTCAACGTCTTCCTCGTCTTCTTCAACAACGCGGATCCCGCTTCTTTCCGACGATAC ATCTGGGCTTACTGCCTTGTTTGCTTTGGTGGTCCTCTGATACCTGCTGTCGTCCTCATCTCCATCACAGGTGAC CCACGGGGTCCCGTCTACGGTGATGCTGCGCTCTGGTGTTGGATCAGTGACAGTTGGGGTCTTGTTCGGCTTTAT GCCTATTACATCCCTATCTGGCTGTGCATCATGATGTCCTTTGTCATCTACTTCGCCGTGGGATACCAAGTCTTT CACCGTCGAAACCAGTTGATGAGCATGTCGATGCACGAAAAGGCCCAGCAGAAGCCGGTCAGGTTCGGCAGAAGT GGCTTCGACTCTGCCGAGGAGGCACGCAGTTCCTCCGTCCCGTCCTTGATGGCCATTATGCGTTCTAACACCATC TGGCAGAGCCTCACACGACGACAAGACGTCTACGGAACCGTCGTCACCGAGGTTCATGTCACATCTACTCTGCCG CCCCTCGACTTTGACTCACCCCGGGCCCCGCCTCGCTCGCACGCCCGAGGCGGCCTCCCTTGCACTTCGTCTTGG GCTTCGGGTCTTCATGGTGAGAGCTTAATCATTCGCAACAATCATCATCATTTTGAGACCATCTGCTCGTCCGAT AGTCCCAGACCCAAGAAACGCACCTGCTTTGAATTCATCAAGGCCGTCTTTGCCGAAGCGTCTCTACGACTGAAG CGCCTTGACCCAGTCAAGATGGCCTACCTGCGCACCAGTTTCATATTTGGCTTTTCGGTTCTCATCACCTGGATT CCGAGCTCAGTCAACAGGCTGTACACGCTGGCCAACGGGGGACGCATCAGCTTCACCCTCAGTGTCGCCAGCGGC TGCGTGCTTCCGCTGCAGGGGGTCTGGAACGCCATCATCTACCTCACGACAAGCTAG |
| Gene | >Ophcf2|03620 ATGCTGCGCCATCCAAGCGATCCGGGCCTCACCACGGCCGAGATCGAGAAGCTCATCACCATCGAGCGAACCGGT GCTGGCCTCTCTATGGTAGCCATAGGCCTTACTGTTCTTTCGTTCCTGGTTTTCAAGAAACTTCGTACCACTCCG AATATGTTTCTGGTCTTTGCCTCCCTCGCCAATGCTGGAGCCAGTGTCGCCTCCATGATCGGTTACGACGGCCTT CACAAGGGAGAAGAATCTTCTCTCTGCCAAGCCCAGGCCTTCATCTTCGAGTGGTTTGTTGACACTTGTATTTGT CCGTGGCTCTCTGCTAATAGATGCACGCAGGTTCATGCAGTCGGATCCTTGGTGGTCGTTTGCTATGGCGGTCAA CGTCTTCCTCGTCTTCTTCAACAACGCGGATCCCGCTTCTTTCCGACGATACATCTGGGCTTACTGCCTTGTTTG CTTTGGTGGTCCTCTGATACCTGCTGTCGTCCTCATCTCCATCACAGGTGACCCACGGGGTCCCGTCTACGGTGA TGCTGCGGTAAGTCTTGCTCCGTTCCTCTTTTCGATTCTCTCCCGAGCCCAAGCTCACTCATTCGCAGCTCTGGT GTTGGATCAGTGACAGTTGGGGTCTTGTTCGGCTTTATGCCTATTACATCCCTATCTGGCTGTGCATCATGATGT CCTTTGTCATCTACTTCGCCGTGGGATACCAAGTCTTTCACCGTCGAAACCAGTTGATGAGCATGTCGATGCACG AAAAGGCCCAGCAGAAGCCGGTCAGGTTCGGCAGAAGTGGCTTCGACTCTGCCGAGGAGGCACGCAGTTCCTCCG TCCCGTCCTTGATGGCCATTATGCGTTCTAACACCATCTGGCAGAGCCTCACACGACGACAAGACGTCTACGGAA CCGTCGTCACCGAGGTTCATGTCACATCTACTCTGCCGCCCCTCGACTTTGACTCACCCCGGGCCCCGCCTCGCT CGCACGCCCGAGGCGGCCTCCCTTGCACTTCGTCTTGGGCTTCGGGTCTTCATGGTGAGAGCTTAATCATTCGCA ACAATCATCATCATTTTGAGACCATCTGCTCGTCCGATAGTCCCAGACCCAAGAAACGCACCTGCTTTGAATTCA TCAAGGCCGTCTTTGCCGAAGCGTCTCTACGACTGAAGCGCCTTGACCCAGTCAAGATGGCCTACCTGCGCACCA GTTTCATATTTGGCTTTTCGGTTCTCATCACCTGGATTCCGAGCTCAGTCAACAGGCTGTACACGCTGGCCAACG GGGGACGCATCAGCTTCACCCTCAGTGTCGCCAGCGGCTGCGTGCTTCCGCTGCAGGGGGTCTGGAACGCCATCA TCTACCTCACGACAAGCTAG |