Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03598
Gene name
Locationscaffold_03:3254550..3255328
Strand+
Gene length (bp)778
Transcript length (bp)726
Coding sequence length (bp)726
Protein length (aa) 242

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08566 Pam17 Mitochondrial import protein Pam17 2.0E-55 85 237

GO

GO Term Description Terminal node
GO:0001405 PAM complex, Tim23 associated import motor Yes
GO:0005575 cellular_component No
GO:0032991 protein-containing complex No
GO:0098798 mitochondrial protein-containing complex No
GO:0098796 membrane protein complex No
GO:0098800 inner mitochondrial membrane protein complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 109 131 22
2 151 173 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03598
MALALRTLASRRPPNPSLLCLLVRPHHGPRHGSPLILKALPLLRHASSSAASQIKTSPPNPTANTTAPDANGASA
SPPASDLSFTPSPKPSLDWNSFFLLRVRRRRIQVAFSLLGFGVCGFGGAFVLSTGVAEPLVAQVPLDPFFTLGLL
GAACAAMGWLVGPSVGAQVFYLFNWPFKSQMIRKESEFFARIKRNRVDPTNSSAGNPVPDFYGERIQSVTGYRQW
LKDQRAFDRKKTANFV*
Coding >Ophcf2|03598
ATGGCCTTGGCCCTCAGAACCCTCGCCTCGCGTCGTCCGCCGAATCCCTCGCTACTCTGCCTCCTCGTCCGTCCT
CACCATGGACCCCGTCACGGCTCTCCGCTCATCTTGAAGGCTCTGCCTCTTCTACGCCATGCCTCTTCCAGCGCG
GCGTCCCAGATCAAAACCTCGCCCCCAAACCCGACGGCCAATACAACGGCTCCCGACGCGAACGGCGCGTCTGCT
TCCCCTCCCGCCTCCGACCTCTCCTTCACGCCGTCGCCCAAGCCGTCGCTCGACTGGAACTCCTTCTTCCTTCTG
CGCGTTCGTCGACGACGCATTCAGGTTGCCTTTTCTCTTCTCGGCTTCGGCGTCTGCGGCTTCGGCGGTGCCTTT
GTCCTGTCTACGGGCGTGGCCGAGCCGCTCGTCGCCCAGGTCCCGCTGGACCCCTTCTTCACCCTAGGCCTCCTG
GGCGCTGCCTGCGCCGCCATGGGCTGGTTGGTGGGACCTAGCGTTGGTGCTCAGGTCTTCTATCTTTTCAACTGG
CCTTTCAAGTCGCAGATGATTCGTAAGGAGAGCGAGTTCTTTGCCAGGATCAAGAGGAACAGAGTTGATCCGACC
AACTCAAGCGCCGGCAACCCAGTTCCCGACTTTTATGGCGAGAGGATCCAGAGCGTTACCGGTTATCGGCAGTGG
CTTAAGGATCAGCGCGCGTTCGACAGGAAGAAGACTGCAAACTTTGTCTAA
Transcript >Ophcf2|03598
ATGGCCTTGGCCCTCAGAACCCTCGCCTCGCGTCGTCCGCCGAATCCCTCGCTACTCTGCCTCCTCGTCCGTCCT
CACCATGGACCCCGTCACGGCTCTCCGCTCATCTTGAAGGCTCTGCCTCTTCTACGCCATGCCTCTTCCAGCGCG
GCGTCCCAGATCAAAACCTCGCCCCCAAACCCGACGGCCAATACAACGGCTCCCGACGCGAACGGCGCGTCTGCT
TCCCCTCCCGCCTCCGACCTCTCCTTCACGCCGTCGCCCAAGCCGTCGCTCGACTGGAACTCCTTCTTCCTTCTG
CGCGTTCGTCGACGACGCATTCAGGTTGCCTTTTCTCTTCTCGGCTTCGGCGTCTGCGGCTTCGGCGGTGCCTTT
GTCCTGTCTACGGGCGTGGCCGAGCCGCTCGTCGCCCAGGTCCCGCTGGACCCCTTCTTCACCCTAGGCCTCCTG
GGCGCTGCCTGCGCCGCCATGGGCTGGTTGGTGGGACCTAGCGTTGGTGCTCAGGTCTTCTATCTTTTCAACTGG
CCTTTCAAGTCGCAGATGATTCGTAAGGAGAGCGAGTTCTTTGCCAGGATCAAGAGGAACAGAGTTGATCCGACC
AACTCAAGCGCCGGCAACCCAGTTCCCGACTTTTATGGCGAGAGGATCCAGAGCGTTACCGGTTATCGGCAGTGG
CTTAAGGATCAGCGCGCGTTCGACAGGAAGAAGACTGCAAACTTTGTCTAA
Gene >Ophcf2|03598
ATGGCCTTGGCCCTCAGAACCCTCGCCTCGCGTCGTCCGCCGAATCCCTCGCTACTCTGCCTCCTCGTCCGTCCT
CACCATGGACCCCGTCACGGCTCTCCGCTCATCTTGAAGGCTCTGCCTCTTCTACGCCATGCCTCTTCCAGCGCG
GCGTCCCAGATCAAAACCTCGCCCCCAAACCCGACGGCCAATACAACGGCTCCCGACGCGAACGGCGCGTCTGCT
TCCCCTCCCGCCTCCGACCTCTCCTTCACGCCGTCGCCCAAGCCGTCGCTCGACTGGAACTCCTTCTTCCTTCTG
CGCGTTCGTCGACGACGCATTCAGGTTGCCTTTTCTCTTCTCGGCTTCGGCGTCTGCGGCTTCGGCGGTGCCTTT
GTCCTGTCTACGGGCGTGGCCGAGCCGCTCGTCGCCCAGGTCCCGCTGGACCCCTTCTTCACCCTAGGCCTCCTG
GGCGCTGCCTGCGCCGCCATGGGCTGGTTGGTGGGACCTAGCGTTGGTGCTCAGGTCTTCTATCTTTTCAACTGG
CCTTTCAAGTCGCAGATGATTCGTAAGGAGAGCGAGTTCTTTGCCAGGATCAAGAGGAACAGAGTTGATCCGACC
AACTCAAGCGCCGGCAACCCAGGTACGATTCACCCTCTCATGGCGTTTTCTTCCGCCTACTGACCATTGCTTAGT
TCCCGACTTTTATGGCGAGAGGATCCAGAGCGTTACCGGTTATCGGCAGTGGCTTAAGGATCAGCGCGCGTTCGA
CAGGAAGAAGACTGCAAACTTTGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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