Protein ID | Ophcf2|03595 |
Gene name | |
Location | scaffold_03:3221378..3222378 |
Strand | - |
Gene length (bp) | 1000 |
Transcript length (bp) | 915 |
Coding sequence length (bp) | 915 |
Protein length (aa) | 305 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04982 | HPP | HPP family | 6.4E-39 | 82 | 206 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Transmembrane domain | 0.0725 | 0.2364 | 0.0394 | 0.4317 | 0.1231 | 0.1173 | 0.688 | 0.3249 | 0.5559 | 0.0178 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 47 | 69 | 22 |
2 | 108 | 127 | 19 |
3 | 134 | 156 | 22 |
4 | 176 | 198 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 473 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03595 MGRRSWNWDLDRLINPLLPPPPWSRLPGWLSHFVGYRRTKTEPTGNVVVTFWAFVGVLASLLVISAVTTRVPLFE ANGVPVIVGSFGAAAVLEFCTIESPLAQPRNAILGQIISAVAAIIVAKLFQLSNHFDQVRWVGGALACASATALM NLSGTVHPPAGATALLAVVDPRIVRLGWLLLPVIMLGCGLMLVLALLVDNIDRRFPLYWWTAQSLSCAKQNENQA ECRCGSSSSSSSSGSSSNGGVDDDEETTIGSPPVIAHYDAILPDSRPEIVVGRGRILVPKHVILSVEEERLLHFM SQRL* |
Coding | >Ophcf2|03595 ATGGGCCGCCGCTCCTGGAATTGGGACCTGGACCGGCTCATCAACCCGCTTCTACCCCCTCCGCCTTGGTCCCGG CTTCCCGGATGGCTGTCGCACTTTGTGGGATACCGCCGGACGAAGACGGAGCCGACGGGCAACGTCGTGGTCACG TTTTGGGCCTTTGTCGGCGTATTGGCTTCTCTGCTCGTCATCTCGGCTGTTACGACTCGTGTACCGCTGTTTGAA GCCAATGGAGTGCCCGTCATCGTCGGCTCCTTTGGTGCCGCAGCCGTCCTCGAATTCTGCACCATTGAATCTCCT CTCGCTCAGCCGCGCAACGCCATCCTCGGCCAGATCATCAGCGCAGTAGCTGCCATCATCGTCGCCAAACTCTTC CAACTGAGCAATCACTTCGATCAAGTCCGCTGGGTAGGAGGTGCCCTGGCCTGCGCCTCTGCCACGGCGCTCATG AATCTCAGCGGCACCGTTCATCCGCCCGCCGGTGCGACGGCGCTGCTGGCCGTCGTTGATCCGCGTATCGTTCGT CTTGGCTGGTTGCTGCTGCCTGTTATTATGCTCGGCTGTGGACTGATGCTTGTTCTGGCTTTGCTTGTCGATAAT ATCGATCGCCGCTTTCCGTTGTATTGGTGGACGGCTCAATCGTTGAGCTGTGCTAAGCAGAATGAGAACCAGGCA GAGTGCCGCTGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAACGGCGGCGTCGATGATGATGAG GAGACGACCATTGGTAGTCCGCCCGTCATCGCCCATTACGACGCCATTCTGCCCGACTCACGACCCGAAATTGTC GTCGGCCGGGGTCGTATCTTGGTGCCCAAGCATGTCATTCTGTCGGTTGAGGAGGAGCGGCTCTTGCACTTTATG AGTCAAAGGTTGTGA |
Transcript | >Ophcf2|03595 ATGGGCCGCCGCTCCTGGAATTGGGACCTGGACCGGCTCATCAACCCGCTTCTACCCCCTCCGCCTTGGTCCCGG CTTCCCGGATGGCTGTCGCACTTTGTGGGATACCGCCGGACGAAGACGGAGCCGACGGGCAACGTCGTGGTCACG TTTTGGGCCTTTGTCGGCGTATTGGCTTCTCTGCTCGTCATCTCGGCTGTTACGACTCGTGTACCGCTGTTTGAA GCCAATGGAGTGCCCGTCATCGTCGGCTCCTTTGGTGCCGCAGCCGTCCTCGAATTCTGCACCATTGAATCTCCT CTCGCTCAGCCGCGCAACGCCATCCTCGGCCAGATCATCAGCGCAGTAGCTGCCATCATCGTCGCCAAACTCTTC CAACTGAGCAATCACTTCGATCAAGTCCGCTGGGTAGGAGGTGCCCTGGCCTGCGCCTCTGCCACGGCGCTCATG AATCTCAGCGGCACCGTTCATCCGCCCGCCGGTGCGACGGCGCTGCTGGCCGTCGTTGATCCGCGTATCGTTCGT CTTGGCTGGTTGCTGCTGCCTGTTATTATGCTCGGCTGTGGACTGATGCTTGTTCTGGCTTTGCTTGTCGATAAT ATCGATCGCCGCTTTCCGTTGTATTGGTGGACGGCTCAATCGTTGAGCTGTGCTAAGCAGAATGAGAACCAGGCA GAGTGCCGCTGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAACGGCGGCGTCGATGATGATGAG GAGACGACCATTGGTAGTCCGCCCGTCATCGCCCATTACGACGCCATTCTGCCCGACTCACGACCCGAAATTGTC GTCGGCCGGGGTCGTATCTTGGTGCCCAAGCATGTCATTCTGTCGGTTGAGGAGGAGCGGCTCTTGCACTTTATG AGTCAAAGGTTGTGA |
Gene | >Ophcf2|03595 ATGGGCCGCCGCTCCTGGAATTGGGACCTGGACCGGCTCATCAACCCGCTTCTACCCCCTCCGCCTTGGTCCCGG CTTCCCGGATGGCTGTCGCACTTTGTGGGATACCGCCGGACGAAGACGGAGCCGACGGGCAACGTCGTGGTCACG TTTTGGGCCTTTGTCGGCGTATTGGCTTCTCTGCTCGTCATCTCGGCTGTTACGACTCGTGTACCGCTGTTTGAA GCCAATGGAGTGCCCGTCATCGTCGGCTCCTTTGTGAGTTTCCCCTTCTTATACCCCCCCCCCCTGAGATGGGAA TCATCAACGCTGCAAAAGCAGCCGAATAACAAAAGAACGTCAGGGTGCCGCAGCCGTCCTCGAATTCTGCACCAT TGAATCTCCTCTCGCTCAGCCGCGCAACGCCATCCTCGGCCAGATCATCAGCGCAGTAGCTGCCATCATCGTCGC CAAACTCTTCCAACTGAGCAATCACTTCGATCAAGTCCGCTGGGTAGGAGGTGCCCTGGCCTGCGCCTCTGCCAC GGCGCTCATGAATCTCAGCGGCACCGTTCATCCGCCCGCCGGTGCGACGGCGCTGCTGGCCGTCGTTGATCCGCG TATCGTTCGTCTTGGCTGGTTGCTGCTGCCTGTTATTATGCTCGGCTGTGGACTGATGCTTGTTCTGGCTTTGCT TGTCGATAATATCGATCGCCGCTTTCCGTTGTATTGGTGGACGGCTCAATCGTTGAGCTGTGCTAAGCAGAATGA GAACCAGGCAGAGTGCCGCTGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAACGGCGGCGTCGA TGATGATGAGGAGACGACCATTGGTAGTCCGCCCGTCATCGCCCATTACGACGCCATTCTGCCCGACTCACGACC CGAAATTGTCGTCGGCCGGGGTCGTATCTTGGTGCCCAAGCATGTCATTCTGTCGGTTGAGGAGGAGCGGCTCTT GCACTTTATGAGTCAAAGGTTGTGA |