© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03570 |
| Gene name | |
| Location | scaffold_03:3120998..3122032 |
| Strand | - |
| Gene length (bp) | 1034 |
| Transcript length (bp) | 675 |
| Coding sequence length (bp) | 675 |
| Protein length (aa) | 225 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04148 | Erv26 | Transmembrane adaptor Erv26 | 2.4E-88 | 1 | 195 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097020 | COPII receptor activity | Yes |
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0038024 | cargo receptor activity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0008150 | biological_process | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0046907 | intracellular transport | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0051179 | localization | No |
| GO:0051641 | cellular localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 31 | 21 |
| 2 | 44 | 61 | 17 |
| 3 | 65 | 82 | 17 |
| 4 | 89 | 111 | 22 |
| 5 | 137 | 159 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 209.47 | 120.34 | 298.59 |
| Alive | In ants, during behavior modification | 188.51 | 107.98 | 269.04 |
| Dead | In ants, recently dead | 182.10 | 104.50 | 259.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.618875 | no |
| Alive | Dead | 0.866421 | no |
| Dead | Fungus | 0.502306 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03570 MWILPLVGYAGTIVGFCFLTLAIASGLYYLSELVEEHTVIAKRLLTRLIYSIVGLQIVLWLVDGFPFWATVLGVV AHVVYLANLRRFPFVQVTSPVFALAVVLVFLDHWVWFRHFSHGQTRAHQRSSYYDDVDAPTFTMIASYFGLCVWL VPFALFVSLSAADNVLPTMGSEPVRGADGKSRHQGMVKAVVDRVRGAIGDLRMSMRPRDVKFHNHHEQPTFAVD* |
| Coding | >Ophcf2|03570 ATGTGGATCCTGCCGCTTGTCGGCTACGCCGGGACTATTGTCGGCTTCTGCTTCCTGACGCTGGCCATTGCCTCT GGGCTTTACTACCTGTCGGAGTTGGTTGAGGAGCACACAGTTATTGCGAAGCGGCTGCTGACGCGCCTGATTTAC TCGATCGTCGGCTTGCAGATTGTATTGTGGCTTGTCGATGGGTTTCCCTTCTGGGCGACCGTGTTGGGCGTCGTT GCTCATGTCGTCTATCTTGCCAATCTGAGGCGCTTCCCTTTCGTCCAGGTGACGAGTCCGGTCTTTGCGTTGGCA GTCGTCCTTGTCTTCTTGGATCACTGGGTGTGGTTCAGACATTTTTCACACGGCCAGACGCGTGCCCATCAACGG TCGTCGTACTATGACGACGTCGACGCCCCTACCTTTACCATGATCGCCTCTTACTTTGGCCTGTGTGTCTGGCTT GTTCCTTTTGCCCTCTTCGTGAGCTTGTCTGCCGCCGACAACGTCTTGCCCACCATGGGGTCGGAGCCGGTGCGT GGCGCAGACGGCAAGAGCAGGCATCAGGGCATGGTCAAGGCTGTTGTCGATCGTGTTCGCGGCGCCATCGGGGAC CTTCGAATGTCCATGAGGCCGAGAGACGTGAAATTCCACAATCACCATGAGCAGCCGACATTCGCCGTCGACTAG |
| Transcript | >Ophcf2|03570 ATGTGGATCCTGCCGCTTGTCGGCTACGCCGGGACTATTGTCGGCTTCTGCTTCCTGACGCTGGCCATTGCCTCT GGGCTTTACTACCTGTCGGAGTTGGTTGAGGAGCACACAGTTATTGCGAAGCGGCTGCTGACGCGCCTGATTTAC TCGATCGTCGGCTTGCAGATTGTATTGTGGCTTGTCGATGGGTTTCCCTTCTGGGCGACCGTGTTGGGCGTCGTT GCTCATGTCGTCTATCTTGCCAATCTGAGGCGCTTCCCTTTCGTCCAGGTGACGAGTCCGGTCTTTGCGTTGGCA GTCGTCCTTGTCTTCTTGGATCACTGGGTGTGGTTCAGACATTTTTCACACGGCCAGACGCGTGCCCATCAACGG TCGTCGTACTATGACGACGTCGACGCCCCTACCTTTACCATGATCGCCTCTTACTTTGGCCTGTGTGTCTGGCTT GTTCCTTTTGCCCTCTTCGTGAGCTTGTCTGCCGCCGACAACGTCTTGCCCACCATGGGGTCGGAGCCGGTGCGT GGCGCAGACGGCAAGAGCAGGCATCAGGGCATGGTCAAGGCTGTTGTCGATCGTGTTCGCGGCGCCATCGGGGAC CTTCGAATGTCCATGAGGCCGAGAGACGTGAAATTCCACAATCACCATGAGCAGCCGACATTCGCCGTCGACTAG |
| Gene | >Ophcf2|03570 ATGTGGATCCTGCCGCTTGTCGGCTACGCCGGGACTATTGTCGGCTTCTGCTTCCTGACGCTGGCCATTGCCTCT GGGCTTTACTACCTGTCGGAGTTGGTTGAGGAGCACACAGTTATTGCGAAGCGGCTGCTGACGCGCCTGATTTAC TCGATCGTCGGCTTGCAGATTGTATTGTGGCTTGTCGATGGGTTTCCCTTCTGGGCGACCGTGTTGGGCGTCGTT GCTCATGTCGTCTATCTTGCCAATCTGAGGCGCTTCCCTTTCGTCCAGGTGACGAGTCCGGTCTTTGCGTTGGCA GTCGGTATGTCTGGTTCTTGACCGCTTCTCTTCCGTTGCTGACGACGCTGGATTCTGCAGTCCTTGTCTTCTTGG ATCACTGGGTGTGGTTCAGACATTTTTCACACGGCCAGACGCGTGCCCATCAACGGTCGTCGTACTATGACGACG TCGACGCCCCTACCTTTACCATGATCGCCTCTTACTTTGGCCTGTGTGTCTGGCTTGTTCCTTTTGCCCTCTTCG TGAGCTTGTCTGCCGCCGACAACGTCTTGCCCACCATGGGGTCGGAGCCGGTGCGTGGCGCAGACGGCAAGAGCA GGCATCAGGGCATGGTCAAGGCTGTTGTCGATCGTGTTCGCGGCGCCATCGGGGACCTTGTCGGCTCTTGGAATA TGGATCGGCCTTAGCCTTTGACGAGACACGGGTTCACCCTGTGGTCATGGGTTGTGTTGTGAAGGCTACCTCGAC TCGCCTCTAGTTGAAGAGAAGTAACGCACGACCTAGCGAATGTGAGTCCTACTTTCATGTTTTTTTTTTCCGCCT ATGATGAATTTCCATCACGCTAGATGGTATTTGACAAGGTAATGCCTTGTGTGATCATTTATGTCATAGTTACTC TGACAGGCGTCACGTTTTATGGAGTCTACGATCATGTCATTAGTAGATGAGAGACTAACTGGGGCAGGTCCATGA GGCCGAGAGACGTGAAATTCCACAATCACCATGAGCAGCCGACATTCGCCGTCGACTAG |