© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03562 |
| Gene name | |
| Location | scaffold_03:3085423..3086828 |
| Strand | + |
| Gene length (bp) | 1405 |
| Transcript length (bp) | 1200 |
| Coding sequence length (bp) | 1200 |
| Protein length (aa) | 400 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.0975 | 0.0727 | 0.0394 | 0.8732 | 0.0622 | 0.0071 | 0.118 | 0.3191 | 0.3628 | 0.0308 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 61 | 22 |
| 2 | 74 | 96 | 22 |
| 3 | 116 | 138 | 22 |
| 4 | 159 | 181 | 22 |
| 5 | 201 | 223 | 22 |
| 6 | 235 | 257 | 22 |
| 7 | 272 | 291 | 19 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 14 | (None) |
| Orthofinder run ID | 4 |
| Orthogroup | 441 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03562 MENFLSLPPARQQAILNGPGLAPPPGVTPNFTHPPNRTTMGITIISICLVLGTLTGLVRLYSRFCTKKLHAEDVL GFAAYVSFVASGWSLLAFGHYGGFFVHQWNVQAKTMITISYVLYFFPIFYCMTMLFAKTAILLEWTRIFVPVIRN SFYWISRLTTLINVCLYLSVIVATSLYCVPVEKVWHKWVPGHCLNRKAVDTCVAVFNLAIDLLILALPQRIIWSL RIDTSKKIGVSIVFSVGLLACACAIARTYLVIQLDFTGDVTYKLCETFMFAYSEMTCVLMVFFVPASARAFKQNS LLSRLVSSLRSWTRLPSSKKSRSAEDVGGQFPPTIGSKPINRLFNSTDEETQALSLGEMRPAERFIVKTMEFEQR EDAASKASTEPEVPSRNHHPWVKP* |
| Coding | >Ophcf2|03562 ATGGAGAACTTCCTCAGCCTCCCGCCTGCCCGGCAGCAGGCCATTCTCAACGGCCCCGGACTGGCGCCGCCACCG GGTGTCACGCCCAACTTCACACACCCGCCCAACAGGACGACGATGGGCATTACCATCATCTCCATCTGCCTCGTC CTTGGCACGCTGACGGGGCTTGTCCGCTTGTACTCGCGTTTCTGCACCAAAAAGTTGCATGCTGAGGATGTCCTC GGCTTCGCGGCATACGTTTCCTTCGTCGCCTCTGGCTGGAGCCTGCTCGCTTTTGGACACTATGGAGGCTTCTTT GTGCACCAGTGGAATGTCCAAGCCAAGACCATGATCACCATTTCTTACGTCTTGTACTTTTTTCCCATCTTTTAC TGCATGACGATGCTCTTCGCCAAGACAGCCATCTTGCTCGAGTGGACGCGTATCTTTGTGCCCGTCATCCGCAAC TCGTTTTACTGGATCAGTCGTCTGACAACACTCATCAACGTCTGCTTATACCTTTCAGTCATCGTCGCCACGTCG TTGTATTGTGTGCCGGTAGAAAAGGTCTGGCACAAGTGGGTTCCGGGCCATTGCCTAAACCGCAAGGCTGTGGAC ACATGCGTTGCCGTCTTCAACCTGGCCATTGATCTTCTCATCTTGGCTCTGCCGCAGCGAATCATCTGGTCCCTG AGAATTGACACGTCCAAAAAGATTGGCGTCTCAATCGTCTTTTCCGTTGGGTTGCTAGCTTGTGCCTGTGCCATC GCTCGGACGTATCTGGTCATTCAGCTGGACTTTACTGGTGACGTGACCTACAAGCTCTGCGAGACATTCATGTTT GCCTATTCGGAGATGACGTGCGTTCTTATGGTCTTTTTCGTGCCGGCGTCGGCGCGCGCTTTCAAGCAGAACAGC CTGCTGTCGAGATTGGTGTCTTCACTGCGTTCCTGGACACGGCTGCCATCATCCAAGAAGAGCCGGTCGGCCGAG GACGTCGGAGGCCAATTCCCGCCTACCATTGGCAGCAAACCCATCAACCGCCTGTTCAACTCGACAGATGAGGAG ACGCAGGCGCTAAGTCTGGGCGAGATGAGGCCGGCGGAGCGATTCATTGTCAAGACTATGGAGTTTGAGCAGCGC GAGGACGCAGCTTCCAAGGCATCCACGGAGCCGGAGGTGCCCAGCCGCAATCATCACCCTTGGGTGAAGCCGTAG |
| Transcript | >Ophcf2|03562 ATGGAGAACTTCCTCAGCCTCCCGCCTGCCCGGCAGCAGGCCATTCTCAACGGCCCCGGACTGGCGCCGCCACCG GGTGTCACGCCCAACTTCACACACCCGCCCAACAGGACGACGATGGGCATTACCATCATCTCCATCTGCCTCGTC CTTGGCACGCTGACGGGGCTTGTCCGCTTGTACTCGCGTTTCTGCACCAAAAAGTTGCATGCTGAGGATGTCCTC GGCTTCGCGGCATACGTTTCCTTCGTCGCCTCTGGCTGGAGCCTGCTCGCTTTTGGACACTATGGAGGCTTCTTT GTGCACCAGTGGAATGTCCAAGCCAAGACCATGATCACCATTTCTTACGTCTTGTACTTTTTTCCCATCTTTTAC TGCATGACGATGCTCTTCGCCAAGACAGCCATCTTGCTCGAGTGGACGCGTATCTTTGTGCCCGTCATCCGCAAC TCGTTTTACTGGATCAGTCGTCTGACAACACTCATCAACGTCTGCTTATACCTTTCAGTCATCGTCGCCACGTCG TTGTATTGTGTGCCGGTAGAAAAGGTCTGGCACAAGTGGGTTCCGGGCCATTGCCTAAACCGCAAGGCTGTGGAC ACATGCGTTGCCGTCTTCAACCTGGCCATTGATCTTCTCATCTTGGCTCTGCCGCAGCGAATCATCTGGTCCCTG AGAATTGACACGTCCAAAAAGATTGGCGTCTCAATCGTCTTTTCCGTTGGGTTGCTAGCTTGTGCCTGTGCCATC GCTCGGACGTATCTGGTCATTCAGCTGGACTTTACTGGTGACGTGACCTACAAGCTCTGCGAGACATTCATGTTT GCCTATTCGGAGATGACGTGCGTTCTTATGGTCTTTTTCGTGCCGGCGTCGGCGCGCGCTTTCAAGCAGAACAGC CTGCTGTCGAGATTGGTGTCTTCACTGCGTTCCTGGACACGGCTGCCATCATCCAAGAAGAGCCGGTCGGCCGAG GACGTCGGAGGCCAATTCCCGCCTACCATTGGCAGCAAACCCATCAACCGCCTGTTCAACTCGACAGATGAGGAG ACGCAGGCGCTAAGTCTGGGCGAGATGAGGCCGGCGGAGCGATTCATTGTCAAGACTATGGAGTTTGAGCAGCGC GAGGACGCAGCTTCCAAGGCATCCACGGAGCCGGAGGTGCCCAGCCGCAATCATCACCCTTGGGTGAAGCCGTAG |
| Gene | >Ophcf2|03562 ATGGAGAACTTCCTCAGCCTCCCGCCTGCCCGGCAGCAGGCCATTCTCAACGGCCCCGGACTGGCGCCGCCACCG GGTGTCACGCCCAACTTCACACACCCGCCCAACAGGACGACGATGGGCATTACCATCATCTCCATCTGCCTCGTC CTTGGCACGCTGACGGGGCTTGTCCGCTTGTACTCGCGTTTCTGCACCAAAAAGTTGCATGCTGAGGATGGTATG TAACCAATCTCGACGGAGACTGCTCCGTGCTCATAGACGAACTACTCAGTCCTCGGCTTCGCGGCATACGTACGA ATACATTACCACCAACGTGCTTTTTTCCCCATCTCACCATGACAGGTTTCCTTCGTCGCCTCTGGCTGGAGCCTG CTCGCTTTTGGACACTATGGAGGCTTCTTTGTGCACCAGTGGAATGTCCAAGCCAAGACCATGATCACCATTTCT TACGTCGGTCTCGCACGCCTCCCACAAGAACGCCGGCTGACGTTGACCAGGTCTTGTACTTTTTTCCCATCTTTT ACTGCATGACGATGCTCTTCGCCAAGACAGCCATCTTGCTCGAGTGGACGCGTATCTTTGTGCCCGTCATCCGCA ACTCGTTTTACTGGATCAGTCGTCTGACAACACTCATCAACGTCTGCTTATACCTTTCAGTCATCGTCGCCACGT CGTTGTATTGTGTGCCGGTAGAAAAGGTCTGGCACAAGTGGGTTCCGGGCCATTGCCTAAACCGCAAGGCTGTGG ACACATGCGTTGCCGTCTTCAACCTGGCCATTGATCTTCTCATCTTGGCTCTGCCGCAGCGAATCATCTGGTCCC TGAGAATTGACACGTCCAAAAAGATTGGCGTCTCAATCGTCTTTTCCGTTGGGTTGCTGTGAGTCGTCCTGCCCG AGTATCAAGGCTGGAAGCTGATTATTGGCCTGCTAGAGCTTGTGCCTGTGCCATCGCTCGGACGTATCTGGTCAT TCAGCTGGACTTTACTGGTGACGTGACCTACAAGCTCTGCGAGACATTCATGTTTGCCTATTCGGAGATGACGTG CGTTCTTATGGTCTTTTTCGTGCCGGCGTCGGCGCGCGCTTTCAAGCAGAACAGCCTGCTGTCGAGATTGGTGTC TTCACTGCGTTCCTGGACACGGCTGCCATCATCCAAGAAGAGCCGGTCGGCCGAGGACGTCGGAGGCCAATTCCC GCCTACCATTGGCAGCAAACCCATCAACCGCCTGTTCAACTCGACAGATGAGGAGACGCAGGCGCTAAGTCTGGG CGAGATGAGGCCGGCGGAGCGATTCATTGTCAAGACTATGGAGTTTGAGCAGCGCGAGGACGCAGCTTCCAAGGC ATCCACGGAGCCGGAGGTGCCCAGCCGCAATCATCACCCTTGGGTGAAGCCGTAG |