Protein ID | Ophcf2|03562 |
Gene name | |
Location | scaffold_03:3085423..3086828 |
Strand | + |
Gene length (bp) | 1405 |
Transcript length (bp) | 1200 |
Coding sequence length (bp) | 1200 |
Protein length (aa) | 400 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Transmembrane domain | 0.0975 | 0.0727 | 0.0394 | 0.8732 | 0.0622 | 0.0071 | 0.118 | 0.3191 | 0.3628 | 0.0308 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 39 | 61 | 22 |
2 | 74 | 96 | 22 |
3 | 116 | 138 | 22 |
4 | 159 | 181 | 22 |
5 | 201 | 223 | 22 |
6 | 235 | 257 | 22 |
7 | 272 | 291 | 19 |
Gene cluster ID | Type of secondary metabolism gene |
---|---|
Cluster 14 | (None) |
Orthofinder run ID | 4 |
Orthogroup | 441 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophcf2|03562 MENFLSLPPARQQAILNGPGLAPPPGVTPNFTHPPNRTTMGITIISICLVLGTLTGLVRLYSRFCTKKLHAEDVL GFAAYVSFVASGWSLLAFGHYGGFFVHQWNVQAKTMITISYVLYFFPIFYCMTMLFAKTAILLEWTRIFVPVIRN SFYWISRLTTLINVCLYLSVIVATSLYCVPVEKVWHKWVPGHCLNRKAVDTCVAVFNLAIDLLILALPQRIIWSL RIDTSKKIGVSIVFSVGLLACACAIARTYLVIQLDFTGDVTYKLCETFMFAYSEMTCVLMVFFVPASARAFKQNS LLSRLVSSLRSWTRLPSSKKSRSAEDVGGQFPPTIGSKPINRLFNSTDEETQALSLGEMRPAERFIVKTMEFEQR EDAASKASTEPEVPSRNHHPWVKP* |
Coding | >Ophcf2|03562 ATGGAGAACTTCCTCAGCCTCCCGCCTGCCCGGCAGCAGGCCATTCTCAACGGCCCCGGACTGGCGCCGCCACCG GGTGTCACGCCCAACTTCACACACCCGCCCAACAGGACGACGATGGGCATTACCATCATCTCCATCTGCCTCGTC CTTGGCACGCTGACGGGGCTTGTCCGCTTGTACTCGCGTTTCTGCACCAAAAAGTTGCATGCTGAGGATGTCCTC GGCTTCGCGGCATACGTTTCCTTCGTCGCCTCTGGCTGGAGCCTGCTCGCTTTTGGACACTATGGAGGCTTCTTT GTGCACCAGTGGAATGTCCAAGCCAAGACCATGATCACCATTTCTTACGTCTTGTACTTTTTTCCCATCTTTTAC TGCATGACGATGCTCTTCGCCAAGACAGCCATCTTGCTCGAGTGGACGCGTATCTTTGTGCCCGTCATCCGCAAC TCGTTTTACTGGATCAGTCGTCTGACAACACTCATCAACGTCTGCTTATACCTTTCAGTCATCGTCGCCACGTCG TTGTATTGTGTGCCGGTAGAAAAGGTCTGGCACAAGTGGGTTCCGGGCCATTGCCTAAACCGCAAGGCTGTGGAC ACATGCGTTGCCGTCTTCAACCTGGCCATTGATCTTCTCATCTTGGCTCTGCCGCAGCGAATCATCTGGTCCCTG AGAATTGACACGTCCAAAAAGATTGGCGTCTCAATCGTCTTTTCCGTTGGGTTGCTAGCTTGTGCCTGTGCCATC GCTCGGACGTATCTGGTCATTCAGCTGGACTTTACTGGTGACGTGACCTACAAGCTCTGCGAGACATTCATGTTT GCCTATTCGGAGATGACGTGCGTTCTTATGGTCTTTTTCGTGCCGGCGTCGGCGCGCGCTTTCAAGCAGAACAGC CTGCTGTCGAGATTGGTGTCTTCACTGCGTTCCTGGACACGGCTGCCATCATCCAAGAAGAGCCGGTCGGCCGAG GACGTCGGAGGCCAATTCCCGCCTACCATTGGCAGCAAACCCATCAACCGCCTGTTCAACTCGACAGATGAGGAG ACGCAGGCGCTAAGTCTGGGCGAGATGAGGCCGGCGGAGCGATTCATTGTCAAGACTATGGAGTTTGAGCAGCGC GAGGACGCAGCTTCCAAGGCATCCACGGAGCCGGAGGTGCCCAGCCGCAATCATCACCCTTGGGTGAAGCCGTAG |
Transcript | >Ophcf2|03562 ATGGAGAACTTCCTCAGCCTCCCGCCTGCCCGGCAGCAGGCCATTCTCAACGGCCCCGGACTGGCGCCGCCACCG GGTGTCACGCCCAACTTCACACACCCGCCCAACAGGACGACGATGGGCATTACCATCATCTCCATCTGCCTCGTC CTTGGCACGCTGACGGGGCTTGTCCGCTTGTACTCGCGTTTCTGCACCAAAAAGTTGCATGCTGAGGATGTCCTC GGCTTCGCGGCATACGTTTCCTTCGTCGCCTCTGGCTGGAGCCTGCTCGCTTTTGGACACTATGGAGGCTTCTTT GTGCACCAGTGGAATGTCCAAGCCAAGACCATGATCACCATTTCTTACGTCTTGTACTTTTTTCCCATCTTTTAC TGCATGACGATGCTCTTCGCCAAGACAGCCATCTTGCTCGAGTGGACGCGTATCTTTGTGCCCGTCATCCGCAAC TCGTTTTACTGGATCAGTCGTCTGACAACACTCATCAACGTCTGCTTATACCTTTCAGTCATCGTCGCCACGTCG TTGTATTGTGTGCCGGTAGAAAAGGTCTGGCACAAGTGGGTTCCGGGCCATTGCCTAAACCGCAAGGCTGTGGAC ACATGCGTTGCCGTCTTCAACCTGGCCATTGATCTTCTCATCTTGGCTCTGCCGCAGCGAATCATCTGGTCCCTG AGAATTGACACGTCCAAAAAGATTGGCGTCTCAATCGTCTTTTCCGTTGGGTTGCTAGCTTGTGCCTGTGCCATC GCTCGGACGTATCTGGTCATTCAGCTGGACTTTACTGGTGACGTGACCTACAAGCTCTGCGAGACATTCATGTTT GCCTATTCGGAGATGACGTGCGTTCTTATGGTCTTTTTCGTGCCGGCGTCGGCGCGCGCTTTCAAGCAGAACAGC CTGCTGTCGAGATTGGTGTCTTCACTGCGTTCCTGGACACGGCTGCCATCATCCAAGAAGAGCCGGTCGGCCGAG GACGTCGGAGGCCAATTCCCGCCTACCATTGGCAGCAAACCCATCAACCGCCTGTTCAACTCGACAGATGAGGAG ACGCAGGCGCTAAGTCTGGGCGAGATGAGGCCGGCGGAGCGATTCATTGTCAAGACTATGGAGTTTGAGCAGCGC GAGGACGCAGCTTCCAAGGCATCCACGGAGCCGGAGGTGCCCAGCCGCAATCATCACCCTTGGGTGAAGCCGTAG |
Gene | >Ophcf2|03562 ATGGAGAACTTCCTCAGCCTCCCGCCTGCCCGGCAGCAGGCCATTCTCAACGGCCCCGGACTGGCGCCGCCACCG GGTGTCACGCCCAACTTCACACACCCGCCCAACAGGACGACGATGGGCATTACCATCATCTCCATCTGCCTCGTC CTTGGCACGCTGACGGGGCTTGTCCGCTTGTACTCGCGTTTCTGCACCAAAAAGTTGCATGCTGAGGATGGTATG TAACCAATCTCGACGGAGACTGCTCCGTGCTCATAGACGAACTACTCAGTCCTCGGCTTCGCGGCATACGTACGA ATACATTACCACCAACGTGCTTTTTTCCCCATCTCACCATGACAGGTTTCCTTCGTCGCCTCTGGCTGGAGCCTG CTCGCTTTTGGACACTATGGAGGCTTCTTTGTGCACCAGTGGAATGTCCAAGCCAAGACCATGATCACCATTTCT TACGTCGGTCTCGCACGCCTCCCACAAGAACGCCGGCTGACGTTGACCAGGTCTTGTACTTTTTTCCCATCTTTT ACTGCATGACGATGCTCTTCGCCAAGACAGCCATCTTGCTCGAGTGGACGCGTATCTTTGTGCCCGTCATCCGCA ACTCGTTTTACTGGATCAGTCGTCTGACAACACTCATCAACGTCTGCTTATACCTTTCAGTCATCGTCGCCACGT CGTTGTATTGTGTGCCGGTAGAAAAGGTCTGGCACAAGTGGGTTCCGGGCCATTGCCTAAACCGCAAGGCTGTGG ACACATGCGTTGCCGTCTTCAACCTGGCCATTGATCTTCTCATCTTGGCTCTGCCGCAGCGAATCATCTGGTCCC TGAGAATTGACACGTCCAAAAAGATTGGCGTCTCAATCGTCTTTTCCGTTGGGTTGCTGTGAGTCGTCCTGCCCG AGTATCAAGGCTGGAAGCTGATTATTGGCCTGCTAGAGCTTGTGCCTGTGCCATCGCTCGGACGTATCTGGTCAT TCAGCTGGACTTTACTGGTGACGTGACCTACAAGCTCTGCGAGACATTCATGTTTGCCTATTCGGAGATGACGTG CGTTCTTATGGTCTTTTTCGTGCCGGCGTCGGCGCGCGCTTTCAAGCAGAACAGCCTGCTGTCGAGATTGGTGTC TTCACTGCGTTCCTGGACACGGCTGCCATCATCCAAGAAGAGCCGGTCGGCCGAGGACGTCGGAGGCCAATTCCC GCCTACCATTGGCAGCAAACCCATCAACCGCCTGTTCAACTCGACAGATGAGGAGACGCAGGCGCTAAGTCTGGG CGAGATGAGGCCGGCGGAGCGATTCATTGTCAAGACTATGGAGTTTGAGCAGCGCGAGGACGCAGCTTCCAAGGC ATCCACGGAGCCGGAGGTGCCCAGCCGCAATCATCACCCTTGGGTGAAGCCGTAG |