© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03509 |
| Gene name | |
| Location | scaffold_03:2891017..2892493 |
| Strand | + |
| Gene length (bp) | 1476 |
| Transcript length (bp) | 1341 |
| Coding sequence length (bp) | 1341 |
| Protein length (aa) | 447 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01529 | DHHC | DHHC palmitoyltransferase | 1.0E-38 | 109 | 234 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016409 | palmitoyltransferase activity | Yes |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide|Transmembrane domain | 0.1518 | 0.143 | 0.0414 | 0.0999 | 0.208 | 0.0022 | 0.5506 | 0.3024 | 0.8485 | 0.0128 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 39 | 22 |
| 2 | 54 | 76 | 22 |
| 3 | 156 | 178 | 22 |
| 4 | 198 | 220 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 67.29 | 38.44 | 96.15 |
| Alive | In ants, during behavior modification | 120.91 | 67.27 | 174.56 |
| Dead | In ants, recently dead | 131.70 | 73.63 | 189.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.001043 | yes |
| Alive | Dead | 0.666761 | no |
| Dead | Fungus | 0.000238 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 5833 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03509 MPPRRWARRLERICCTLGTYVPVAFVYGMTTWAVWVVIVIGGAEPESRWRGTPSSVVGLALYLLLNWSYTTAVFT SPGSTTTDDGYGLLPTAAARPPASSLTVKSSNGQVRFCKKCQARKPDRAHHCSSCRRCILKMDHHCPWLATCIGL RNHKAFLLFLIYTTVFSLYAFALSGSWLWSEVVVESARYVDSLMPVNFIVLAVVSGIIGLVVGGFTAWHVLLACR GQTTIECLEKTRYLSPLRRMHQQQALPPTAQRLVDMHANALPGVTRPEEGESSVTMAASADGGCDDVDDDDVVEV DLEAAAPFAGRRHVSYADREREQTRRRYEDYLDEHDSDKLPNAFDLGWRRNLTHLLGPRPSLWLVPICNTTGDGW AWEAGPRWLDARDRLRRERQRQREREISAGWGAAAEGEDEEHRQRRSPSKADRVLGRDPDLYADGTQGVRE* |
| Coding | >Ophcf2|03509 ATGCCGCCTCGGCGATGGGCCCGAAGGCTCGAGAGGATATGCTGCACCCTGGGGACCTACGTGCCCGTGGCCTTT GTCTACGGCATGACGACTTGGGCTGTCTGGGTTGTTATCGTCATTGGGGGCGCTGAGCCTGAGTCGCGATGGAGA GGGACGCCCTCTTCCGTCGTTGGCCTCGCCCTCTATCTCCTCCTCAACTGGTCCTATACAACGGCCGTCTTTACC AGCCCCGGCTCGACGACGACTGACGATGGCTACGGTCTTCTCCCTACCGCCGCTGCCCGTCCGCCCGCCTCCTCG CTTACGGTCAAGAGCAGCAACGGCCAGGTTCGCTTCTGCAAGAAGTGTCAGGCCCGGAAGCCCGATCGCGCCCAC CACTGCTCATCGTGTCGGCGCTGTATCCTCAAGATGGATCATCACTGTCCCTGGCTGGCGACGTGCATTGGCCTG CGAAACCACAAGGCCTTTCTGCTCTTTCTCATCTACACCACCGTCTTCAGCCTCTACGCTTTCGCCCTGAGTGGC TCGTGGCTGTGGTCCGAGGTCGTGGTGGAGTCGGCGCGTTACGTCGATTCGCTCATGCCCGTTAACTTTATTGTT CTAGCCGTCGTCAGCGGCATCATCGGTCTCGTCGTCGGTGGCTTCACCGCTTGGCACGTCCTCCTCGCCTGTCGC GGTCAGACGACCATCGAATGCCTCGAGAAGACACGCTATCTGTCGCCCCTAAGGAGGATGCACCAGCAGCAGGCC CTCCCACCTACCGCCCAGCGGCTGGTGGACATGCACGCCAACGCGCTGCCGGGTGTGACGCGGCCCGAGGAGGGC GAAAGCAGCGTGACCATGGCAGCATCAGCCGACGGCGGCTGCGACGACGTCGACGATGACGACGTCGTCGAAGTC GACCTGGAAGCCGCCGCCCCGTTTGCAGGCCGAAGACACGTCTCATACGCGGATCGCGAGCGCGAGCAGACGCGG CGCCGGTACGAAGATTACCTGGACGAGCACGACTCGGACAAGCTGCCCAACGCCTTTGACCTCGGCTGGCGACGC AACCTGACGCACCTGCTCGGCCCAAGGCCCTCCCTCTGGCTCGTGCCCATCTGCAACACCACGGGCGACGGCTGG GCCTGGGAAGCCGGTCCGCGCTGGCTCGACGCACGGGATCGCCTCCGCCGCGAGCGACAACGACAGCGAGAGCGC GAGATCAGCGCCGGCTGGGGCGCCGCGGCGGAGGGAGAAGACGAGGAGCATCGGCAGCGTCGATCACCGAGTAAA GCGGATCGTGTTCTCGGTCGGGATCCGGATCTGTACGCCGATGGGACGCAGGGGGTGCGGGAGTAG |
| Transcript | >Ophcf2|03509 ATGCCGCCTCGGCGATGGGCCCGAAGGCTCGAGAGGATATGCTGCACCCTGGGGACCTACGTGCCCGTGGCCTTT GTCTACGGCATGACGACTTGGGCTGTCTGGGTTGTTATCGTCATTGGGGGCGCTGAGCCTGAGTCGCGATGGAGA GGGACGCCCTCTTCCGTCGTTGGCCTCGCCCTCTATCTCCTCCTCAACTGGTCCTATACAACGGCCGTCTTTACC AGCCCCGGCTCGACGACGACTGACGATGGCTACGGTCTTCTCCCTACCGCCGCTGCCCGTCCGCCCGCCTCCTCG CTTACGGTCAAGAGCAGCAACGGCCAGGTTCGCTTCTGCAAGAAGTGTCAGGCCCGGAAGCCCGATCGCGCCCAC CACTGCTCATCGTGTCGGCGCTGTATCCTCAAGATGGATCATCACTGTCCCTGGCTGGCGACGTGCATTGGCCTG CGAAACCACAAGGCCTTTCTGCTCTTTCTCATCTACACCACCGTCTTCAGCCTCTACGCTTTCGCCCTGAGTGGC TCGTGGCTGTGGTCCGAGGTCGTGGTGGAGTCGGCGCGTTACGTCGATTCGCTCATGCCCGTTAACTTTATTGTT CTAGCCGTCGTCAGCGGCATCATCGGTCTCGTCGTCGGTGGCTTCACCGCTTGGCACGTCCTCCTCGCCTGTCGC GGTCAGACGACCATCGAATGCCTCGAGAAGACACGCTATCTGTCGCCCCTAAGGAGGATGCACCAGCAGCAGGCC CTCCCACCTACCGCCCAGCGGCTGGTGGACATGCACGCCAACGCGCTGCCGGGTGTGACGCGGCCCGAGGAGGGC GAAAGCAGCGTGACCATGGCAGCATCAGCCGACGGCGGCTGCGACGACGTCGACGATGACGACGTCGTCGAAGTC GACCTGGAAGCCGCCGCCCCGTTTGCAGGCCGAAGACACGTCTCATACGCGGATCGCGAGCGCGAGCAGACGCGG CGCCGGTACGAAGATTACCTGGACGAGCACGACTCGGACAAGCTGCCCAACGCCTTTGACCTCGGCTGGCGACGC AACCTGACGCACCTGCTCGGCCCAAGGCCCTCCCTCTGGCTCGTGCCCATCTGCAACACCACGGGCGACGGCTGG GCCTGGGAAGCCGGTCCGCGCTGGCTCGACGCACGGGATCGCCTCCGCCGCGAGCGACAACGACAGCGAGAGCGC GAGATCAGCGCCGGCTGGGGCGCCGCGGCGGAGGGAGAAGACGAGGAGCATCGGCAGCGTCGATCACCGAGTAAA GCGGATCGTGTTCTCGGTCGGGATCCGGATCTGTACGCCGATGGGACGCAGGGGGTGCGGGAGTAG |
| Gene | >Ophcf2|03509 ATGCCGCCTCGGCGATGGGCCCGAAGGCTCGAGAGGATATGCTGCACCCTGGGGACCTACGTGCCCGTGGCCTTT GTCTACGGCATGACGACTTGGGCTGTCTGGGTTGTTATCGTCATTGGGGGCGCTGAGCCTGAGTCGCGATGGAGA GGTTGCATCATCATCATGTCCTGTCGTCGTATATCCTCGCTGACAGATTTTCCGTCCAGGGACGCCCTCTTCCGT CGTTGGCCTCGCCCTCTATCTCCTCCTCAACTGGTCCTATACAACGGCCGTCTTTACCAGCCCCGGCTCGACGAC GACTGACGATGGCTACGGTCTTCTCCCTACCGCCGCTGCCCGTCCGCCCGCCTCCTCGCTTACGGTCAAGAGCAG CAACGGCCAGGTTCGCTTCTGCAAGAAGTGTCAGGCCCGGAAGCCCGATCGCGCCCACCACTGCTCATCGTGTCG GCGCTGTATCCTCAAGATGGATCATCACTGTCCCTGGCTGGCGACGTGCATTGGCCTGCGAAACCACAAGGCCTT TCTGCTCTTTCTCATCTACACCACCGTCTTCAGCCTCTACGCTTTCGCCCTGAGTGGCTCGTGGCTGTGGTCCGA GGTCGTGGTGGAGTCGGCGCGTTACGTCGATTCGCTCATGCCCGTTAACTTTATTGTTCTAGCCGTCGTCAGCGG CATCATCGGTCTCGTCGTCGGTGGCTTCACCGCTTGGCACGTCCTCCTCGCCTGTCGCGGTCAGACGACCATCGA ATGCCTCGAGAAGACACGCTATCTGTCGCCCCTAAGGAGGATGCACCAGCAGCAGGCCCTCCCACCTACCGCCCA GCGGCTGGTGGACATGCACGCCAACGCGCTGCCGGGTGTGACGCGGCCCGAGGAGGGCGAAAGCAGCGTGACCAT GGCAGCATCAGCCGACGGCGGCTGCGACGACGTCGACGATGACGACGTCGTCGAAGTCGACCTGGAAGCCGCCGC CCCGTTTGCAGGCCGAAGACACGTCTCATACGCGGATCGCGAGCGCGAGCAGACGCGGCGCCGGTACGAAGATTA CCTGGACGAGCACGACTCGGACAAGCTGCCCAACGCCTTTGACCTCGGCTGGCGACGCAACCTGACGCACCTGCT CGGCCCAAGGCCCTCCCTCTGGCTCGTGCCCATCTGCAACACCACGGGCGACGGCTGGGCCTGGGAAGCCGGTCC GCGCTGGCTCGACGCACGGGATCGCCTCCGCCGCGAGCGACAACGACAGCGAGAGCGCGAGATCAGCGCCGGCTG GGGCGCCGCGGCGGAGGGAGAAGACGAGGAGCATCGGCAGCGTCGATCACCGAGTAAAGCGGATCGTGTTCTCGG TCGGGATCCGGATCTGTACGCCGATGGGACGCAGGGGGTGCGTATGCAGCGGCTTAGTCGGAGGGGAAAGACGCT TGATGACGAGTTGCATGATTTGGATGCTGAGGGGGAGGGGAAGGGGAGTAG |