Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03504
Gene name
Locationscaffold_03:2878024..2878558
Strand+
Gene length (bp)534
Transcript length (bp)333
Coding sequence length (bp)333
Protein length (aa) 111

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF15932 DUF4748 Domain of unknown function (DUF4748) 4.2E-22 3 51

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 7 25 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03504
MNTVRSFWVGWGSLCVAGAGAYYLAKREINADRQSKLEQTRKKQLETRALDSDVTAEHARTDSAGSPSQEACSDP
APTRHAPMTESERISEKSKYESSVPYRRPKGDRLS*
Coding >Ophcf2|03504
ATGAATACGGTCCGATCTTTCTGGGTGGGATGGGGCTCTCTTTGCGTCGCCGGAGCCGGCGCGTACTACCTGGCT
AAACGTGAGATCAACGCCGACCGCCAGTCGAAGCTTGAACAGACTCGCAAGAAGCAGCTTGAGACGCGTGCATTG
GATTCGGATGTCACCGCCGAGCACGCGAGGACGGATAGCGCTGGCTCGCCCAGCCAGGAGGCCTGTTCGGATCCC
GCACCGACGAGGCATGCGCCGATGACCGAGTCCGAGCGAATATCGGAAAAGAGCAAGTACGAGAGCAGCGTGCCG
TACCGGAGGCCGAAAGGCGATCGGTTATCTTGA
Transcript >Ophcf2|03504
ATGAATACGGTCCGATCTTTCTGGGTGGGATGGGGCTCTCTTTGCGTCGCCGGAGCCGGCGCGTACTACCTGGCT
AAACGTGAGATCAACGCCGACCGCCAGTCGAAGCTTGAACAGACTCGCAAGAAGCAGCTTGAGACGCGTGCATTG
GATTCGGATGTCACCGCCGAGCACGCGAGGACGGATAGCGCTGGCTCGCCCAGCCAGGAGGCCTGTTCGGATCCC
GCACCGACGAGGCATGCGCCGATGACCGAGTCCGAGCGAATATCGGAAAAGAGCAAGTACGAGAGCAGCGTGCCG
TACCGGAGGCCGAAAGGCGATCGGTTATCTTGA
Gene >Ophcf2|03504
ATGAATACGGTGCGTGTAGATCTCCCGCTCCTCCTTTGCTACCTTCAAAAGTGAGCTCTGTCTCTAACCGCCAAC
CGCACCAGGTCCGATCTTTCTGGTGCGCCACTTCGCCAGCCTCGCTACTCTCGCATTGCTGACGCTCTTCTTATT
GTAGGGTGGGATGGGGCTCTCTTTGCGTCGGTAGGGCTCCTCGTCCCGCCCCGTCCCGTTCCGTTGTCTGCAACC
TACTAAAGGCGCTCATCCGTTACAGCCGGAGCCGGCGCGTACTACCTGGCTAAACGTGAGATCAACGCCGACCGC
CAGTCGAAGCTTGAACAGACTCGCAAGAAGCAGCTTGAGACGCGTGCATTGGATTCGGATGTCACCGCCGAGCAC
GCGAGGACGGATAGCGCTGGCTCGCCCAGCCAGGAGGCCTGTTCGGATCCCGCACCGACGAGGCATGCGCCGATG
ACCGAGTCCGAGCGAATATCGGAAAAGAGCAAGTACGAGAGCAGCGTGCCGTACCGGAGGCCGAAAGGCGATCGG
TTATCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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