© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03495 |
| Gene name | |
| Location | scaffold_03:2859477..2860241 |
| Strand | - |
| Gene length (bp) | 764 |
| Transcript length (bp) | 486 |
| Coding sequence length (bp) | 486 |
| Protein length (aa) | 162 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00137 | ATP-synt_C | ATP synthase subunit C | 7.4E-10 | 17 | 75 |
| PF00137 | ATP-synt_C | ATP synthase subunit C | 1.9E-16 | 96 | 155 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:1902600 | proton transmembrane transport | Yes |
| GO:0015078 | proton transmembrane transporter activity | Yes |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | Yes |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006812 | cation transport | No |
| GO:0051179 | localization | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0098796 | membrane protein complex | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 53 | 75 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 130 | 152 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 180.81 | 100.00 | 261.63 |
| Alive | In ants, during behavior modification | 297.61 | 170.70 | 424.52 |
| Dead | In ants, recently dead | 210.02 | 117.75 | 302.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.005733 | yes |
| Alive | Dead | 0.025870 | yes |
| Dead | Fungus | 0.484277 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03495 MESELAPKFAPFIGMAGIAAAMVFGSIGAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYSLVISVLI AQDLSPPGNESYSLFSGFMHLACGTAVGMTGLAAGYCIGVVGDTGVRAYMQQSRIFVGMVLILIFGEVLGLYGLI VALLLNSRSKG* |
| Coding | >Ophcf2|03495 ATGGAGTCCGAGCTGGCACCCAAGTTTGCGCCCTTTATAGGCATGGCTGGCATTGCGGCCGCCATGGTCTTTGGC TCCATCGGCGCCGCGTACGGCACTGCCAAGTCTGGTATCGGCATCGCGGGCGTCGGAACCTTTCGCCCGGACCTG ATCATGAAGTGCCTGATCCCCGTCGTCATGTCTGGCATCATCGCCGTCTACTCGCTCGTCATCTCCGTTCTCATC GCCCAAGACCTCTCGCCGCCGGGCAACGAAAGCTACTCCCTGTTCTCGGGCTTCATGCACCTCGCGTGTGGCACG GCCGTCGGCATGACGGGCCTCGCGGCTGGATATTGCATCGGTGTCGTCGGTGACACGGGCGTGCGAGCCTACATG CAGCAGTCGAGAATCTTTGTGGGAATGGTTCTCATTCTCATCTTTGGCGAGGTTCTGGGTCTCTACGGTCTCATT GTTGCACTACTTCTCAATTCGCGGAGCAAAGGCTGA |
| Transcript | >Ophcf2|03495 ATGGAGTCCGAGCTGGCACCCAAGTTTGCGCCCTTTATAGGCATGGCTGGCATTGCGGCCGCCATGGTCTTTGGC TCCATCGGCGCCGCGTACGGCACTGCCAAGTCTGGTATCGGCATCGCGGGCGTCGGAACCTTTCGCCCGGACCTG ATCATGAAGTGCCTGATCCCCGTCGTCATGTCTGGCATCATCGCCGTCTACTCGCTCGTCATCTCCGTTCTCATC GCCCAAGACCTCTCGCCGCCGGGCAACGAAAGCTACTCCCTGTTCTCGGGCTTCATGCACCTCGCGTGTGGCACG GCCGTCGGCATGACGGGCCTCGCGGCTGGATATTGCATCGGTGTCGTCGGTGACACGGGCGTGCGAGCCTACATG CAGCAGTCGAGAATCTTTGTGGGAATGGTTCTCATTCTCATCTTTGGCGAGGTTCTGGGTCTCTACGGTCTCATT GTTGCACTACTTCTCAATTCGCGGAGCAAAGGCTGA |
| Gene | >Ophcf2|03495 ATGGAGTCCGAGCTGGCACCCAAGTTTGCGCCCTTTATAGGCATGGTGAGTCGTCTCTGGGATCGCCTGGGAGTG CTGTGGAACTGATGCGTCGACGCAGGCTGGCATTGCGGCCGCCATGGTCTTTGGCTGTAGGCGAGCCCCCGTCTT CCCATCTCTGGGGCGAAACGAGAAGATGCTGAACGGCTTGCAGCCATCGGCGCCGCGTACGGCACTGCCAAGTCT GGTATCGGCATCGCGGGCGTCGGAACCTTTCGCCCGGACCTGATCATGAAGGTAGCGCCACTGTCCATATCCTCC CGTGCCGTCGGCTCGACTAACTCGGTATCTCTCAGTGCCTGATCCCCGTCGTCATGTCTGGCATCATCGCCGTCT ACTCGCTCGTCATCTCCGTTCTCATCGCCCAAGACCTCTCGCCGCCGGGCAACGAAAGCTACTCCCTGTTCTCGT ACGTTCTCCCGAACGCCGCCCAACACGGGTCGCGAGTTGACTCGTTGCAGGGGCTTCATGCACCTCGCGTGTGGC ACGGCCGTCGGCATGACGGGCCTCGCGGCTGGATATTGCATCGGTGTCGTCGGTGACACGGGCGTGCGAGCCTAC ATGCAGCAGTCGAGAATCTTTGTGGGAATGGTTCTCATTCTCATCTTTGGCGAGGTTCTGGGTCTCTACGGGTAT GTCTCGGACGGCGCTATCCCTGTCGATGACTTGGCTGACGATGTAGTCTCATTGTTGCACTACTTCTCAATTCGC GGAGCAAAGGCTGA |