© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03487 |
| Gene name | |
| Location | scaffold_03:2841893..2843590 |
| Strand | + |
| Gene length (bp) | 1697 |
| Transcript length (bp) | 1590 |
| Coding sequence length (bp) | 1590 |
| Protein length (aa) | 530 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00955 | HCO3_cotransp | HCO3- transporter family | 1.0E-33 | 16 | 183 |
| PF00955 | HCO3_cotransp | HCO3- transporter family | 7.0E-36 | 189 | 450 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006820 | anion transport | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0006811 | ion transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 65 | 22 |
| 2 | 78 | 100 | 22 |
| 3 | 120 | 142 | 22 |
| 4 | 155 | 172 | 17 |
| 5 | 187 | 209 | 22 |
| 6 | 222 | 244 | 22 |
| 7 | 280 | 299 | 19 |
| 8 | 319 | 341 | 22 |
| 9 | 374 | 396 | 22 |
| 10 | 401 | 423 | 22 |
| 11 | 457 | 479 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 2.81 | 0.63 | 5.00 |
| Alive | In ants, during behavior modification | 0.71 | 0.00 | 1.48 |
| Dead | In ants, recently dead | 1.53 | 0.20 | 2.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.004221 | yes |
| Alive | Dead | 0.050315 | no |
| Dead | Fungus | 0.104095 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03487 MPPGPIPPSQRSLFQPFRLLRSDIHNVAQRWTSDWTELNQQVIASAVYIFFTNLLPGITFASDLFELTGRSWGPI EVVFSTGLCGIVFALFSAQPLTILGVTGPFSVLAENIYQLCSTRFHINFLAVMAWTLIHAGWMHLILAALNAHDW TMRYVTHFSADVFSLLNSVIYFHKAALELRRTHDTVSLAAFLYAVIGAVGTCLLAVLLSTANSWRPLLHRYLRLG LAEYAAAISIVLWIAIPHIGELDSLDHQRLQVRTELRPSDPDRTVFLVPFWRLPIAWIFLAIIPAAIVTVLFFFD HEISSIICTASRYGVRKPAGFAWDVALLGLTTLLCGVLGLPPANGLLPQAPLHSESLLYHDKDGQPRTYEQRYSA LIQAALILAFISPPFQRLLGLTQTSVLAGLFMFMGYQSLAVNPILGRVAHLLTPPSELPRLPQNVSWLGVHGFTL TQIVVTGAVFAMTLTVAAPAFPLVIIALVPVRLTLMGRIWSRETLRFVDGWACRPGKPEDNADPVEVPPDTRPDE EKGP* |
| Coding | >Ophcf2|03487 ATGCCCCCAGGGCCCATCCCCCCGTCTCAACGCTCACTCTTCCAACCCTTCCGCCTCCTCCGCTCCGACATCCAC AACGTCGCCCAACGATGGACCTCGGACTGGACGGAGCTGAATCAGCAGGTCATCGCCAGCGCCGTCTACATCTTC TTCACTAATCTACTTCCCGGCATTACCTTTGCCAGCGATCTGTTCGAGCTGACGGGGCGGTCATGGGGGCCCATC GAGGTTGTCTTCAGCACGGGGCTTTGCGGCATCGTCTTTGCCCTGTTCTCAGCTCAACCTCTCACCATCCTCGGC GTCACAGGCCCCTTCTCCGTCCTAGCAGAAAACATCTACCAACTCTGCTCAACCCGCTTCCACATCAACTTCCTC GCCGTCATGGCCTGGACCCTCATCCACGCCGGCTGGATGCACCTCATCCTCGCCGCCCTCAACGCCCACGACTGG ACGATGCGCTACGTAACCCACTTCAGCGCCGACGTCTTCTCCCTCCTCAACAGCGTCATCTACTTCCACAAAGCC GCCCTCGAACTCCGCCGCACCCACGACACCGTCTCTCTCGCCGCCTTTCTCTACGCCGTCATCGGCGCCGTTGGA ACCTGTCTACTAGCCGTCTTACTGTCAACCGCCAACTCATGGCGTCCACTGCTACACCGCTACCTCCGTCTCGGC CTGGCCGAGTACGCGGCCGCCATCTCCATCGTCTTGTGGATAGCCATCCCCCACATAGGCGAACTCGACTCCCTC GACCATCAACGCTTACAGGTCCGCACCGAACTGCGACCCTCAGACCCAGACCGCACCGTCTTCCTCGTCCCCTTC TGGCGGCTACCCATCGCCTGGATCTTCCTCGCCATCATCCCCGCCGCCATCGTCACCGTCCTCTTCTTCTTCGAC CACGAAATCAGCAGCATCATCTGCACAGCCTCCCGCTACGGCGTCCGGAAACCAGCCGGCTTTGCCTGGGACGTC GCCCTCCTCGGCCTCACCACCCTCCTCTGCGGCGTCCTCGGTCTCCCGCCAGCCAACGGCCTGCTGCCCCAGGCG CCTCTCCACTCCGAGTCCCTCCTGTACCACGACAAGGACGGCCAGCCGCGGACATACGAGCAACGCTACTCGGCT CTTATCCAGGCGGCCCTCATCCTCGCCTTCATCTCGCCCCCCTTCCAGCGCCTCCTCGGCTTGACCCAGACGTCG GTCTTAGCCGGCCTCTTCATGTTCATGGGCTATCAATCTCTAGCCGTGAACCCCATCCTCGGGCGCGTCGCTCAC CTCCTAACGCCGCCCTCGGAGCTACCTCGTCTCCCCCAGAACGTCTCCTGGCTCGGCGTCCACGGCTTCACACTA ACGCAGATTGTCGTCACCGGTGCCGTCTTCGCCATGACGCTCACCGTCGCCGCTCCGGCCTTTCCCCTGGTCATC ATCGCCCTGGTTCCCGTCCGGCTAACGCTCATGGGCCGTATATGGAGCCGCGAGACGCTGCGCTTCGTCGATGGC TGGGCCTGTCGTCCGGGGAAACCCGAAGACAATGCGGATCCGGTTGAGGTTCCACCCGATACCCGGCCCGACGAG GAAAAAGGGCCGTGA |
| Transcript | >Ophcf2|03487 ATGCCCCCAGGGCCCATCCCCCCGTCTCAACGCTCACTCTTCCAACCCTTCCGCCTCCTCCGCTCCGACATCCAC AACGTCGCCCAACGATGGACCTCGGACTGGACGGAGCTGAATCAGCAGGTCATCGCCAGCGCCGTCTACATCTTC TTCACTAATCTACTTCCCGGCATTACCTTTGCCAGCGATCTGTTCGAGCTGACGGGGCGGTCATGGGGGCCCATC GAGGTTGTCTTCAGCACGGGGCTTTGCGGCATCGTCTTTGCCCTGTTCTCAGCTCAACCTCTCACCATCCTCGGC GTCACAGGCCCCTTCTCCGTCCTAGCAGAAAACATCTACCAACTCTGCTCAACCCGCTTCCACATCAACTTCCTC GCCGTCATGGCCTGGACCCTCATCCACGCCGGCTGGATGCACCTCATCCTCGCCGCCCTCAACGCCCACGACTGG ACGATGCGCTACGTAACCCACTTCAGCGCCGACGTCTTCTCCCTCCTCAACAGCGTCATCTACTTCCACAAAGCC GCCCTCGAACTCCGCCGCACCCACGACACCGTCTCTCTCGCCGCCTTTCTCTACGCCGTCATCGGCGCCGTTGGA ACCTGTCTACTAGCCGTCTTACTGTCAACCGCCAACTCATGGCGTCCACTGCTACACCGCTACCTCCGTCTCGGC CTGGCCGAGTACGCGGCCGCCATCTCCATCGTCTTGTGGATAGCCATCCCCCACATAGGCGAACTCGACTCCCTC GACCATCAACGCTTACAGGTCCGCACCGAACTGCGACCCTCAGACCCAGACCGCACCGTCTTCCTCGTCCCCTTC TGGCGGCTACCCATCGCCTGGATCTTCCTCGCCATCATCCCCGCCGCCATCGTCACCGTCCTCTTCTTCTTCGAC CACGAAATCAGCAGCATCATCTGCACAGCCTCCCGCTACGGCGTCCGGAAACCAGCCGGCTTTGCCTGGGACGTC GCCCTCCTCGGCCTCACCACCCTCCTCTGCGGCGTCCTCGGTCTCCCGCCAGCCAACGGCCTGCTGCCCCAGGCG CCTCTCCACTCCGAGTCCCTCCTGTACCACGACAAGGACGGCCAGCCGCGGACATACGAGCAACGCTACTCGGCT CTTATCCAGGCGGCCCTCATCCTCGCCTTCATCTCGCCCCCCTTCCAGCGCCTCCTCGGCTTGACCCAGACGTCG GTCTTAGCCGGCCTCTTCATGTTCATGGGCTATCAATCTCTAGCCGTGAACCCCATCCTCGGGCGCGTCGCTCAC CTCCTAACGCCGCCCTCGGAGCTACCTCGTCTCCCCCAGAACGTCTCCTGGCTCGGCGTCCACGGCTTCACACTA ACGCAGATTGTCGTCACCGGTGCCGTCTTCGCCATGACGCTCACCGTCGCCGCTCCGGCCTTTCCCCTGGTCATC ATCGCCCTGGTTCCCGTCCGGCTAACGCTCATGGGCCGTATATGGAGCCGCGAGACGCTGCGCTTCGTCGATGGC TGGGCCTGTCGTCCGGGGAAACCCGAAGACAATGCGGATCCGGTTGAGGTTCCACCCGATACCCGGCCCGACGAG GAAAAAGGGCCGTGA |
| Gene | >Ophcf2|03487 ATGCCCCCAGGGCCCATCCCCCCGTCTCAACGCTCACTCTTCCAACCCTTCCGCCTCCTCCGCTCCGACATCCAC AACGTCGCCCAACGATGGACCTCGGACTGGACGGAGCTGAATCAGCAGGTCATCGCCAGCGCCGTCTACATCTTC TTCACTAATCTACTTCCCGGCATTACCTTTGCCAGCGATCTGTTCGAGCTGACGGGGCGGTCATGGGGGCCCATC GAGGTTGTCTTCAGCACGGGGCTTTGCGGCATCGTCTTTGCCCTGTGGGTTTTCCCTTCCCTCGTTTGAGAGTCA CAGCGTTGACAATCGAGAATACCTAGGTTCTCAGCTCAACCTCTCACCATCCTCGGCGTCACAGGCCCCTTCTCC GTCCTAGCAGAAAACATCTACCAACTCTGCTCAACCCGCTTCCACGTCCGTCCCCAACCGCAACCCCAACCACAT CCGCTAACCTCCCAAGCCAGATCAACTTCCTCGCCGTCATGGCCTGGACCCTCATCCACGCCGGCTGGATGCACC TCATCCTCGCCGCCCTCAACGCCCACGACTGGACGATGCGCTACGTAACCCACTTCAGCGCCGACGTCTTCTCCC TCCTCAACAGCGTCATCTACTTCCACAAAGCCGCCCTCGAACTCCGCCGCACCCACGACACCGTCTCTCTCGCCG CCTTTCTCTACGCCGTCATCGGCGCCGTTGGAACCTGTCTACTAGCCGTCTTACTGTCAACCGCCAACTCATGGC GTCCACTGCTACACCGCTACCTCCGTCTCGGCCTGGCCGAGTACGCGGCCGCCATCTCCATCGTCTTGTGGATAG CCATCCCCCACATAGGCGAACTCGACTCCCTCGACCATCAACGCTTACAGGTCCGCACCGAACTGCGACCCTCAG ACCCAGACCGCACCGTCTTCCTCGTCCCCTTCTGGCGGCTACCCATCGCCTGGATCTTCCTCGCCATCATCCCCG CCGCCATCGTCACCGTCCTCTTCTTCTTCGACCACGAAATCAGCAGCATCATCTGCACAGCCTCCCGCTACGGCG TCCGGAAACCAGCCGGCTTTGCCTGGGACGTCGCCCTCCTCGGCCTCACCACCCTCCTCTGCGGCGTCCTCGGTC TCCCGCCAGCCAACGGCCTGCTGCCCCAGGCGCCTCTCCACTCCGAGTCCCTCCTGTACCACGACAAGGACGGCC AGCCGCGGACATACGAGCAACGCTACTCGGCTCTTATCCAGGCGGCCCTCATCCTCGCCTTCATCTCGCCCCCCT TCCAGCGCCTCCTCGGCTTGACCCAGACGTCGGTCTTAGCCGGCCTCTTCATGTTCATGGGCTATCAATCTCTAG CCGTGAACCCCATCCTCGGGCGCGTCGCTCACCTCCTAACGCCGCCCTCGGAGCTACCTCGTCTCCCCCAGAACG TCTCCTGGCTCGGCGTCCACGGCTTCACACTAACGCAGATTGTCGTCACCGGTGCCGTCTTCGCCATGACGCTCA CCGTCGCCGCTCCGGCCTTTCCCCTGGTCATCATCGCCCTGGTTCCCGTCCGGCTAACGCTCATGGGCCGTATAT GGAGCCGCGAGACGCTGCGCTTCGTCGATGGCTGGGCCTGTCGTCCGGGGAAACCCGAAGACAATGCGGATCCGG TTGAGGTTCCACCCGATACCCGGCCCGACGAGGAAAAAGGGCCGTGA |