© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03474 |
| Gene name | |
| Location | scaffold_03:2802944..2804148 |
| Strand | + |
| Gene length (bp) | 1204 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 891 |
| Protein length (aa) | 297 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07264 | EI24 | Etoposide-induced protein 2.4 (EI24) | 5.2E-13 | 46 | 258 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 86 | 22 |
| 2 | 90 | 112 | 22 |
| 3 | 183 | 205 | 22 |
| 4 | 238 | 260 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 75.74 | 41.86 | 109.61 |
| Alive | In ants, during behavior modification | 30.94 | 13.88 | 47.99 |
| Dead | In ants, recently dead | 31.71 | 14.79 | 48.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.926298 | no |
| Dead | Fungus | 0.000238 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03474 MSESTVSRKSRAVGAVGAKAQHVLQEDYGKAKTVALDALRSRAYLYPFKGIFYLVSHRSLWKPFMSCLGPYFSLY VCVVGGMFTVAYLPQLAVLVFVNGPLAVFTTVVLILNESSALVNGLSRTWILQDALLDTFDGTLIARDATAAVRH GREIRPGADPMQRLGKILVSPFERFSLTALIRYLVYLPLNFIPLVGTAVFLFLQGRNRGRLVHGRYFQLKKWSAS QRSHWLEEHIGPYTAFGLVATLLEMIPLASIFFTFSNTVGAALWAADMEALDVSMADETSPTLRKRAAKAE* |
| Coding | >Ophcf2|03474 ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTTCAA GAGGACTATGGCAAGGCCAAGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGGC ATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACCCTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATAC GTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCTCCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCG CTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGAGAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGG ATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGACTCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCAC GGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCGGCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTC AGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCCACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTT CTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCATGGCCGGTACTTCCAACTTAAGAAGTGGTCGGCCTCG CAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCCTTCGGCCTGGTCGCGACGCTGCTGGAGATG ATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGTGGGCGCCGCGCTCTGGGCCGCTGACATGGAAGCC CTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGAGTGA |
| Transcript | >Ophcf2|03474 ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTTCAA GAGGACTATGGCAAGGCCAAGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGGC ATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACCCTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATAC GTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCTCCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCG CTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGAGAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGG ATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGACTCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCAC GGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCGGCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTC AGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCCACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTT CTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCATGGCCGGTACTTCCAACTTAAGAAGTGGTCGGCCTCG CAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCCTTCGGCCTGGTCGCGACGCTGCTGGAGATG ATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGTGGGCGCCGCGCTCTGGGCCGCTGACATGGAAGCC CTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGAGTGA |
| Gene | >Ophcf2|03474 ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTGTAT GCGTCCTGGCCATCACTCCGTTCTCTGGACGAAGGCTGACGACGCGCAACAGTCAAGAGGACTATGGCAAGGCCA AGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGTGAGCTCATACAATAGACGGA ACTCACCGACGGAGCTGACGCGGTCTCTCTACAGGGCATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACC CTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATACGTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCT CCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCGCTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGA GAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGGATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGAC TCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCACGGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCG GCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTCAGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCC ACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTTCTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCA TGGCCGGGTGAGTTGAACGCCGATACATCGTCGTTTGACAGGACCGACGCTTACATCCATGCTTCCTGCAGTACT TCCAACTTAAGAAGTGGTCGGCCTCGCAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCGTAGG TTCCAACCTCCCGGTAACGGAGATTCTGCAGACACCCGACTCGCTAACGTTGCATGGCGTCTCAGCTTCGGCCTG GTCGCGACGCTGCTGGAGATGATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGGTAAGCTGTCGTCT TCGTTTGGGCTGTTTTTTTATCCATGTCCAGCTTTGGTTGACGACCGTACAAGTGGGCGCCGCGCTCTGGGCCGC TGACATGGAAGCCCTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGA GTGA |