Fungal Genomics

at Utrecht University

General Properties

Protein IDOphcf2|03474
Gene name
Locationscaffold_03:2802944..2804148
Strand+
Gene length (bp)1204
Transcript length (bp)891
Coding sequence length (bp)891
Protein length (aa) 297

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07264 EI24 Etoposide-induced protein 2.4 (EI24) 5.2E-13 46 258

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 64 86 22
2 90 112 22
3 183 205 22
4 238 260 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in: Will et al., G3, 2020

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Fungus Fungus in pure culture 75.74 41.86 109.61
Alive In ants, during behavior modification 30.94 13.88 47.99
Dead In ants, recently dead 31.71 14.79 48.64

Differential expression

Label1 Label2 Q-value Significant difference
Alive Fungus 0.000238 yes
Alive Dead 0.926298 no
Dead Fungus 0.000238 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophcf2|03474
MSESTVSRKSRAVGAVGAKAQHVLQEDYGKAKTVALDALRSRAYLYPFKGIFYLVSHRSLWKPFMSCLGPYFSLY
VCVVGGMFTVAYLPQLAVLVFVNGPLAVFTTVVLILNESSALVNGLSRTWILQDALLDTFDGTLIARDATAAVRH
GREIRPGADPMQRLGKILVSPFERFSLTALIRYLVYLPLNFIPLVGTAVFLFLQGRNRGRLVHGRYFQLKKWSAS
QRSHWLEEHIGPYTAFGLVATLLEMIPLASIFFTFSNTVGAALWAADMEALDVSMADETSPTLRKRAAKAE*
Coding >Ophcf2|03474
ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTTCAA
GAGGACTATGGCAAGGCCAAGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGGC
ATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACCCTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATAC
GTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCTCCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCG
CTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGAGAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGG
ATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGACTCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCAC
GGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCGGCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTC
AGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCCACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTT
CTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCATGGCCGGTACTTCCAACTTAAGAAGTGGTCGGCCTCG
CAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCCTTCGGCCTGGTCGCGACGCTGCTGGAGATG
ATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGTGGGCGCCGCGCTCTGGGCCGCTGACATGGAAGCC
CTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGAGTGA
Transcript >Ophcf2|03474
ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTTCAA
GAGGACTATGGCAAGGCCAAGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGGC
ATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACCCTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATAC
GTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCTCCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCG
CTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGAGAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGG
ATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGACTCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCAC
GGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCGGCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTC
AGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCCACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTT
CTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCATGGCCGGTACTTCCAACTTAAGAAGTGGTCGGCCTCG
CAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCCTTCGGCCTGGTCGCGACGCTGCTGGAGATG
ATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGTGGGCGCCGCGCTCTGGGCCGCTGACATGGAAGCC
CTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGAGTGA
Gene >Ophcf2|03474
ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTGTAT
GCGTCCTGGCCATCACTCCGTTCTCTGGACGAAGGCTGACGACGCGCAACAGTCAAGAGGACTATGGCAAGGCCA
AGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGTGAGCTCATACAATAGACGGA
ACTCACCGACGGAGCTGACGCGGTCTCTCTACAGGGCATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACC
CTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATACGTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCT
CCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCGCTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGA
GAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGGATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGAC
TCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCACGGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCG
GCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTCAGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCC
ACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTTCTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCA
TGGCCGGGTGAGTTGAACGCCGATACATCGTCGTTTGACAGGACCGACGCTTACATCCATGCTTCCTGCAGTACT
TCCAACTTAAGAAGTGGTCGGCCTCGCAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCGTAGG
TTCCAACCTCCCGGTAACGGAGATTCTGCAGACACCCGACTCGCTAACGTTGCATGGCGTCTCAGCTTCGGCCTG
GTCGCGACGCTGCTGGAGATGATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGGTAAGCTGTCGTCT
TCGTTTGGGCTGTTTTTTTATCCATGTCCAGCTTTGGTTGACGACCGTACAAGTGGGCGCCGCGCTCTGGGCCGC
TGACATGGAAGCCCTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGA
GTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail