© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03474 |
| Gene name | |
| Location | scaffold_03:2802944..2804148 |
| Strand | + |
| Gene length (bp) | 1204 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 891 |
| Protein length (aa) | 297 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07264 | EI24 | Etoposide-induced protein 2.4 (EI24) | 5.2E-13 | 46 | 258 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide | 0.218 | 0.1367 | 0.256 | 0.0682 | 0.2149 | 0.013 | 0.7955 | 0.6143 | 0.4017 | 0.1867 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 86 | 22 |
| 2 | 90 | 112 | 22 |
| 3 | 183 | 205 | 22 |
| 4 | 238 | 260 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2870 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03474 MSESTVSRKSRAVGAVGAKAQHVLQEDYGKAKTVALDALRSRAYLYPFKGIFYLVSHRSLWKPFMSCLGPYFSLY VCVVGGMFTVAYLPQLAVLVFVNGPLAVFTTVVLILNESSALVNGLSRTWILQDALLDTFDGTLIARDATAAVRH GREIRPGADPMQRLGKILVSPFERFSLTALIRYLVYLPLNFIPLVGTAVFLFLQGRNRGRLVHGRYFQLKKWSAS QRSHWLEEHIGPYTAFGLVATLLEMIPLASIFFTFSNTVGAALWAADMEALDVSMADETSPTLRKRAAKAE* |
| Coding | >Ophcf2|03474 ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTTCAA GAGGACTATGGCAAGGCCAAGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGGC ATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACCCTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATAC GTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCTCCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCG CTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGAGAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGG ATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGACTCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCAC GGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCGGCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTC AGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCCACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTT CTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCATGGCCGGTACTTCCAACTTAAGAAGTGGTCGGCCTCG CAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCCTTCGGCCTGGTCGCGACGCTGCTGGAGATG ATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGTGGGCGCCGCGCTCTGGGCCGCTGACATGGAAGCC CTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGAGTGA |
| Transcript | >Ophcf2|03474 ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTTCAA GAGGACTATGGCAAGGCCAAGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGGC ATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACCCTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATAC GTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCTCCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCG CTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGAGAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGG ATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGACTCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCAC GGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCGGCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTC AGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCCACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTT CTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCATGGCCGGTACTTCCAACTTAAGAAGTGGTCGGCCTCG CAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCCTTCGGCCTGGTCGCGACGCTGCTGGAGATG ATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGTGGGCGCCGCGCTCTGGGCCGCTGACATGGAAGCC CTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGAGTGA |
| Gene | >Ophcf2|03474 ATGTCCGAATCCACTGTTTCGAGAAAAAGCCGCGCTGTAGGAGCTGTCGGCGCCAAGGCACAACACGTCCTGTAT GCGTCCTGGCCATCACTCCGTTCTCTGGACGAAGGCTGACGACGCGCAACAGTCAAGAGGACTATGGCAAGGCCA AGACAGTCGCTCTGGACGCGCTGCGAAGTCGCGCGTATCTGTATCCCTTCAAGGTGAGCTCATACAATAGACGGA ACTCACCGACGGAGCTGACGCGGTCTCTCTACAGGGCATCTTCTACCTCGTCAGCCACCGAAGTCTCTGGAAACC CTTCATGTCGTGTCTTGGCCCCTACTTCAGCCTATACGTCTGCGTCGTGGGCGGCATGTTCACCGTAGCCTACCT CCCGCAGCTGGCAGTCCTCGTCTTCGTCAACGGACCGCTCGCCGTCTTCACCACCGTCGTGCTCATCCTCAACGA GAGCTCGGCGTTGGTAAACGGCCTGTCGCGAACCTGGATCTTGCAGGATGCCCTCCTCGACACCTTTGACGGGAC TCTGATTGCCAGGGACGCGACGGCCGCGGTTCGTCACGGTCGAGAGATTCGCCCGGGCGCGGATCCCATGCAGCG GCTCGGCAAGATTCTCGTCAGCCCCTTTGAGCGCTTCAGCTTGACTGCCCTGATCCGCTATCTCGTTTACCTGCC ACTCAACTTTATCCCTCTCGTCGGCACCGCCGTCTTTCTCTTCCTGCAGGGTCGAAATCGTGGCCGATTGGTTCA TGGCCGGGTGAGTTGAACGCCGATACATCGTCGTTTGACAGGACCGACGCTTACATCCATGCTTCCTGCAGTACT TCCAACTTAAGAAGTGGTCGGCCTCGCAGCGGTCGCATTGGCTGGAGGAGCACATCGGCCCTTATACCGCGTAGG TTCCAACCTCCCGGTAACGGAGATTCTGCAGACACCCGACTCGCTAACGTTGCATGGCGTCTCAGCTTCGGCCTG GTCGCGACGCTGCTGGAGATGATTCCACTGGCTTCCATCTTCTTTACCTTTAGCAACACCGGTAAGCTGTCGTCT TCGTTTGGGCTGTTTTTTTATCCATGTCCAGCTTTGGTTGACGACCGTACAAGTGGGCGCCGCGCTCTGGGCCGC TGACATGGAAGCCCTCGACGTGTCCATGGCAGACGAGACATCCCCAACGCTGAGAAAGAGAGCAGCCAAGGCCGA GTGA |