© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophcf2|03467 |
| Gene name | |
| Location | scaffold_03:2782469..2783605 |
| Strand | + |
| Gene length (bp) | 1136 |
| Transcript length (bp) | 909 |
| Coding sequence length (bp) | 909 |
| Protein length (aa) | 303 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 1.9E-17 | 10 | 68 |
| PF04193 | PQ-loop | PQ loop repeat | 1.4E-20 | 204 | 260 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 45 | 67 | 22 |
| 3 | 72 | 94 | 22 |
| 4 | 162 | 184 | 22 |
| 5 | 199 | 221 | 22 |
| 6 | 234 | 256 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Fungus | Fungus in pure culture | 60.44 | 32.63 | 88.26 |
| Alive | In ants, during behavior modification | 131.94 | 72.63 | 191.25 |
| Dead | In ants, recently dead | 95.90 | 54.05 | 137.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Alive | Fungus | 0.000238 | yes |
| Alive | Dead | 0.047142 | yes |
| Dead | Fungus | 0.014140 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophcf2|03467 MASSALTDALSGIFGSISLTAWIFLLLPQLYANFKAKSADGLSLVFLFVWSLGDIANLSGALLTNLAPSAVALAG YFCILDLTLISQCLYYNALNAQLSRSNDSDVDADPEHSPLLADGRERSADLGIVVADSPAPSSQKRAASAADSNA STGSWTRNGLSLLGVYLIGLAGWFVSYKAGAWGHTPPNAPDLPPPKHDMGATVGVVLGYVSAAFYLCARIPQIVK NYREKSCQGLSLLFFMLSLTGNLTYGLSLIAYSQESDYLVKSLPWLLGSLGTMVEDGAIFVQFRLYASGSRVEDP DL* |
| Coding | >Ophcf2|03467 ATGGCCTCGTCCGCTCTAACCGACGCCTTGTCCGGCATCTTTGGCAGCATCAGCCTGACCGCTTGGATTTTCCTG CTGCTGCCTCAACTGTATGCCAATTTCAAGGCAAAGAGCGCGGATGGACTGAGCCTGGTCTTCCTCTTCGTCTGG TCGCTGGGCGACATCGCCAATCTCTCAGGCGCTCTGCTCACTAATCTGGCGCCCAGCGCCGTCGCCCTCGCCGGG TACTTTTGCATCCTGGACCTCACTCTCATCAGCCAATGTCTCTACTACAACGCTCTCAACGCCCAGCTTTCCCGC TCGAATGACTCGGATGTCGACGCCGACCCGGAACATTCCCCCCTGTTGGCGGACGGTCGCGAACGCTCAGCTGAC TTGGGCATCGTCGTCGCCGATTCGCCAGCGCCATCGAGTCAGAAACGAGCCGCCTCCGCCGCTGACTCGAACGCC AGCACCGGCTCGTGGACTCGCAATGGCCTGAGCCTGCTGGGCGTTTACCTGATCGGCCTGGCCGGCTGGTTCGTC TCGTACAAGGCGGGTGCCTGGGGTCACACCCCGCCAAACGCCCCTGATCTCCCTCCGCCGAAGCACGACATGGGC GCGACCGTCGGCGTCGTCTTGGGATACGTCAGTGCCGCCTTTTACCTCTGCGCTCGGATCCCGCAGATTGTCAAG AATTACCGAGAAAAATCATGTCAAGGCTTGTCATTGCTGTTCTTCATGCTGTCTCTGACGGGCAACCTGACATAC GGCCTGAGTCTGATTGCCTACTCGCAGGAGTCGGATTACCTGGTCAAGTCGCTGCCCTGGCTGCTGGGCTCGCTG GGCACCATGGTAGAGGACGGGGCGATTTTCGTCCAGTTTCGGCTTTACGCCAGCGGGAGTCGAGTTGAAGACCCG GACCTTTAG |
| Transcript | >Ophcf2|03467 ATGGCCTCGTCCGCTCTAACCGACGCCTTGTCCGGCATCTTTGGCAGCATCAGCCTGACCGCTTGGATTTTCCTG CTGCTGCCTCAACTGTATGCCAATTTCAAGGCAAAGAGCGCGGATGGACTGAGCCTGGTCTTCCTCTTCGTCTGG TCGCTGGGCGACATCGCCAATCTCTCAGGCGCTCTGCTCACTAATCTGGCGCCCAGCGCCGTCGCCCTCGCCGGG TACTTTTGCATCCTGGACCTCACTCTCATCAGCCAATGTCTCTACTACAACGCTCTCAACGCCCAGCTTTCCCGC TCGAATGACTCGGATGTCGACGCCGACCCGGAACATTCCCCCCTGTTGGCGGACGGTCGCGAACGCTCAGCTGAC TTGGGCATCGTCGTCGCCGATTCGCCAGCGCCATCGAGTCAGAAACGAGCCGCCTCCGCCGCTGACTCGAACGCC AGCACCGGCTCGTGGACTCGCAATGGCCTGAGCCTGCTGGGCGTTTACCTGATCGGCCTGGCCGGCTGGTTCGTC TCGTACAAGGCGGGTGCCTGGGGTCACACCCCGCCAAACGCCCCTGATCTCCCTCCGCCGAAGCACGACATGGGC GCGACCGTCGGCGTCGTCTTGGGATACGTCAGTGCCGCCTTTTACCTCTGCGCTCGGATCCCGCAGATTGTCAAG AATTACCGAGAAAAATCATGTCAAGGCTTGTCATTGCTGTTCTTCATGCTGTCTCTGACGGGCAACCTGACATAC GGCCTGAGTCTGATTGCCTACTCGCAGGAGTCGGATTACCTGGTCAAGTCGCTGCCCTGGCTGCTGGGCTCGCTG GGCACCATGGTAGAGGACGGGGCGATTTTCGTCCAGTTTCGGCTTTACGCCAGCGGGAGTCGAGTTGAAGACCCG GACCTTTAG |
| Gene | >Ophcf2|03467 ATGGCCTCGTCCGCTCTAACCGACGCCTTGTCCGGCATCTTTGGCAGCATCAGCCTGACCGCTTGGATTTTCCTG CTGGTGCGTCACCACCCAGAGCGTATGCGAGTCACTGATTGACCGCCCTTCAGCTGCCTCAACTGTATGCCAATT TCAAGGCAAAGAGCGCGGATGGACTGAGCCTGGTCTTCCTCTTCGTCTGGTCGCTGGGCGACATCGCCAATCTCT CAGGTGCCTCATCCTCCCCGACCATCGGGGACACGGAGATGAGATTGACGGTCGAGTCCAAACCCAGGCGCTCTG CTCACTAATCTGGCGCCCAGCGCCGTCGCCCTCGCCGGGTACTTTTGCATCCTGGACCTCACTCTCATCAGCCAA TGTCTCTACTACAACGCTCTCAACGCCCAGCTTTCCCGCTCGAATGACTCGGATGTCGACGCCGACCCGGAACAT TCCCCCCTGTTGGCGGACGGTCGCGAACGCTCAGCTGACTTGGGCATCGTCGTCGCCGATTCGCCAGCGCCATCG AGTCAGAAACGAGCCGCCTCCGCCGCTGACTCGAACGCCAGCACCGGCTCGTGGACTCGCAATGGCCTGAGCCTG CTGGGCGTTTACCTGATCGGCCTGGCCGGCTGGTTCGTCTCGTACAAGGCGGGTGCCTGGGGTCACACCCCGCCA AACGCCCCTGATCTCCCTCCGCCGAAGCACGACATGGGCGCGACCGTCGGCGTCGTCTTGGGATACGTCAGTGCC GCCTTTTACCTCTGGTGAGATTCGTCCGCGAGCCGGTCCCTTCGGAAGGATGCTGACGGCCAACTCGCAGCGCTC GGATCCCGCAGATTGTCAAGAATTACCGAGAAAAATCATGTCAAGGTCAGGGACCTCGTCTCACCCGATGGAGCC ACGAATGTTCTCTAACGAGCGCCTCAGGCTTGTCATTGCTGTTCTTCATGCTGTCTCTGACGGGCAACCTGACAT ACGGCCTGAGTCTGATTGCCTACTCGCAGGAGTCGGATTACCTGGTCAAGTCGCTGCCCTGGCTGCTGGGCTCGC TGGGCACCATGGTAGAGGACGGGGCGATTTTCGTCCAGTTTCGGCTTTACGCCAGCGGGAGTCGAGTTGAAGACC CGGACCTTTAG |